Department of Systems Biology

  1. 2013
  2. Published

    In Vivo SILAC-Based Proteomics Reveals Phosphoproteome Changes during Mouse Skin Carcinogenesis. / Zanivan, Sara; Meves, Alexander; Behrendt, Kristina; Schoof, Erwin; Neilson, Lisa J.; Cox, Jürgen; Tang, Hao R.; Kalna, Gabriela; van Ree, Janine H.; van Deursen, Jan M.; Trempus, Carol S.; Machesky, Laura M.; Linding, Rune; Wickström, Sara A.; Fässler, Reinhard; Mann, Matthias.

    In: Cell Reports, Vol. 3, No. 2, 2013, p. 552-566.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  3. Published

    Lipid hydrolysis products affect the composition of microbiota isolated from infant fecal samples after in vitro fermentation. / Bennike, Rikke Mette Guldhammer; Licht, Tine Rask; Hellgren, Lars.

    2013. Abstract from Cell Symposia, Lisbon, Portugal.

    Publication: Research - peer-reviewConference abstract for conference – Annual report year: 2013

  4. Published

    Lipid hydrolysis products affect the composition of microbiota isolated from infant fecal samples after in vitro fermentation. / Bennike, Rikke Mette Guldhammer; Licht, Tine Rask; Hellgren, Lars.

    2013. Abstract from 27th Nordic Lipid Symposium, Helsinki, Finland.

    Publication: ResearchConference abstract for conference – Annual report year: 2013

  5. Published

    Multilocus phylogeny and MALDI-TOF analysis of the plant pathogenic species Alternaria dauci and relatives. / Brun, Sophie; Madrid, Hugo; Gerrits Van Den Ende, Bert; Andersen, Birgitte; Marinach-Patrice, Carine; Mazier, Dominique; De Hoog, G. Sybren.

    In: Fungal Biology, Vol. 117, No. 1, 2013, p. 32-40.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  6. Published

    Peptide-binding motifs associated with MHC molecules common in Chinese rhesus macaques are analogous to those of human HLA supertypes and include HLA-B27-like alleles. / Mothé, Bianca R.; Southwood, Scott; Sidney, John; English, A. Michelle; Wriston, Amanda; Hoof, Ilka; Shabanowitz, Jeffrey; Hunt, Donald F.; Sette, Alessandro.

    In: Immunogenetics, Vol. 65, No. 5, 2013, p. 371-386.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  7. Published

    Phylogenetic analyses of RPB1 and RPB2 support a middle Cretaceous origin for a clade comprising all agriculturally and medically important fusaria. / O’Donnell, Kerry; Rooney, Alejandro P.; Proctor, Robert H.; Brown, Daren W.; McCormick, Susan P.; Ward, Todd J.; Frandsen, Rasmus John Normand; Lysøe, Erik; Rehner, Stephen A.; Aoki, Takayuki; Robert, Vincent A.R.G.; Crous, Pedro W.; Groenewald, Johannes Z.; Kang, Seogchan; Geiser, David M.

    In: Fungal Genetics and Biology, Vol. 52, 2013, p. 20-31.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  8. Published

    Phylogenetic relationships among members of the Fusarium solani species complex in human infections and the descriptions of F. keratoplasticum sp. nov. and F. petroliphilum stat. nov.. / Short, Dylan P.G.; O’Donnell, Kerry; Thrane, Ulf; Nielsen, Kristian Fog; Zhang, Ning; Juba, Jean H.; Geiser, David M.

    In: Fungal Genetics and Biology, Vol. 53, 2013, p. 59-70.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  9. Published

    Postnatal amniotic fluid intake reduces gut inflammatory responses and necrotizing enterocolitis in preterm neonates. / Siggers, Jayda; Østergaard, Mette V.; Siggers, Richard H.; Skovgaard, Kerstin; Mølbak, Lars; Thymann, Thomas; Schmidt, Mette; Møller, Hanne Kristine; Purup, Stig; Fink, Lisbeth Nielsen; Frøkiær, Hanne; Boye, Mette; Sangild, Per T.; Bering, Stine B.

    In: American Journal of Physiology: Gastrointestinal and Liver Physiology, Vol. 304, No. 10, 2013, p. G864-G875.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  10. Published

    Predictions of Phase Separation in Three-Component Lipid Membranes by the MARTINI Force Field. / Davis, Ryan S.; Sunil Kumar, P. B.; Sperotto, Maria Maddalena; Laradji, Mohamed.

    In: Journal of Physical Chemistry Part B: Condensed Matter, Materials, Surfaces, Interfaces & Biophysical, Vol. 117, 2013, p. 4072-4080.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  11. Published

    Production of fusarielins by Fusarium. / Sørensen, Jens Laurids; Akk, Elina; Thrane, Ulf; Giese, Henriette; Sondergaard, Teis Esben.

    In: International Journal of Food Microbiology, Vol. 160, No. 3, 2013, p. 206-211.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

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