Department of Systems Biology

  1. 2017
  2. Published

    Global analysis of biosynthetic gene clusters reveals vast potential of secondary metabolite production in Penicillium species. / Nielsen, Jens Christian; Grijseels, Sietske; Prigent, Sylvain ; Ji, Boyang; Dainat, Jacques; Nielsen, Kristian Fog; Frisvad, Jens Christian; Workman, Mhairi; Nielsen, Jens.

    In: Nature Microbiology, Vol. 2, 17044, 2017.

    Publication: Research - peer-reviewJournal article – Annual report year: 2017

  3. Published

    Global occurrence and heterogeneity of the Roseobacter-clade species Ruegeria mobilis. / Sonnenschein, Eva; Nielsen, Kristian Fog; D'Alvise, Paul; Porsby, Cisse Hedegaard; Melchiorsen, Jette; Heilmann, Jens; Kalatzis, Panos G.; López-Pérez, Mario; Bunk, Boyke; Spröer, Cathrin; Middelboe, Mathias; Gram, Lone.

    In: The I S M E Journal, Vol. 11, No. 2, 2017, p. 569–583.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  4. Published

    Global transcriptional response of solvent-sensitive and solvent-tolerant Pseudomonas putida strains exposed to toluene. / Molina-Santiago, Carlos; Udaondo, Zulema; Gómez Lozano, María; Molin, Søren; Ramos, Juan-Luis.

    In: Environmental Microbiology, Vol. 19, No. 2, 2017.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  5. Published
  6. E-pub ahead of print

    Hierarchical Sets: Analyzing Pangenome Structure through Scalable Set Visualizations. / Pedersen, Thomas Lin.

    In: Bioinformatics, 2017.

    Publication: Research - peer-reviewJournal article – Annual report year: 2017

  7. E-pub ahead of print
  8. Published

    Major differences between human atopic dermatitis and murine models as determined by global transcriptomic profiling. / Ewald, David Adrian; Noda, Shinji; Oliva, Margeaux; Litman, Thomas; Nakajima, Saeko; Li, Xuan; Xu, Hui; Scheipers, Peter; Svitacheva, Naila; Labuda, Tord; Krueger, James G.; Suárez-Fariñas, Mayte; Kabashima, Kenji; Guttman-Yassky, Emma.

    In: Journal of Allergy and Clinical Immunology, Vol. 139, No. 2, 2017, p. 562-571.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  9. Published

    Meta-Analysis of Genome-Wide Association Studies for Abdominal Aortic Aneurysm Identifies Four New Disease-Specific Risk Loci. / Jones, Gregory T; Tromp, Gerard; Kuivaniemi, Helena; Gretarsdottir, Solveig; Baas, Annette F; Giusti, Betti; Strauss, Ewa; van 't Hof, Femke N; Webb, Thomas; Erdman, Robert; Lindholt, Jes S.; Folkersen, Lasse.

    In: Circulation Research, Vol. 120, 116.308765, 2017, p. 341-353.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  10. Published

    MIToS.jl: mutual information tools for protein sequence analysis in the Julia language. / Zea, Diego J.; Anfossi, Diego; Nielsen, Morten; Marino-Buslje, Cristina.

    In: Bioinformatics, Vol. 33, No. 4, btw646, 2017.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  11. Published

    Network reconstruction of the mouse secretory pathway applied on CHO cell transcriptome data. / Lund, Anne Mathilde; Kaas, Christian Schrøder; Brandl, Julian; Pedersen, Lasse Ebdrup; Kildegaard, Helene Faustrup; Kristensen, Claus; Andersen, Mikael Rørdam.

    In: B M C Systems Biology, Vol. 11, No. 1, 37, 2017.

    Publication: Research - peer-reviewJournal article – Annual report year: 2017

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