Department of Systems Biology

  1. 2016
  2. Published

    Antibiotic combination therapy can select for broad-spectrum multidrug resistance in Pseudomonas aeruginosa. / Vestergaard, Martin; Paulander, Wilhelm; Marvig, Rasmus L.; Clasen, Julie; Jochumsen, Nicholas; Molin, Søren; Jelsbak, Lars; Ingmer, Hanne; Folkesson, Sven Anders.

    In: International Journal of Antimicrobial Agents, Vol. 47, 2016, p. 48-55.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  3. Accepted/In press

    Application of WGS data for O-specific antigen analysis and in silico serotyping of Pseudomonas aeruginosa isolates. / Thrane, Sandra Wingaard; Taylor, Véronique L.; Lund, Ole; Lam, Joseph S.; Jelsbak, Lars.

    In: Journal of Clinical Microbiology, 2016.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  4. Published

    Approaches for Comparative Genomics in Aspergillus and Penicillium. / Rasmussen, Jane Lind Nybo; Theobald, Sebastian; Brandl, Julian; Vesth, Tammi Camilla; Andersen, Mikael Rørdam.

    Aspergillus and Penicillium in the Post-genomic Era. ed. / Ronald P. de Vries; Isabelle Benoit Gelber; Mikael Rørdam Andersen. Caister Academic Press, 2016.

    Publication: Research - peer-reviewBook chapter – Annual report year: 2016

  5. Published

    A robust prognostic gene expression signature for early stage lung adenocarcinoma. / Krzystanek, Marcin; Moldvay, Judit; Szüts, David; Szallasi, Zoltan Imre; Eklund, Aron Charles.

    In: Biomarker Research, Vol. 4, No. 4, 2016.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  6. Published

    aspMine - online comparative analysis of species from the Aspergillus genus. / Vesth, Tammi Camilla; Rasmussen, Jane Lind Nybo; Theobald, Sebastian; de Vries, Ronald P.; Grigoriev, Igor V.; Baker, Scott E.; Andersen, Mikael Rørdam.

    Book of abstracts from the 13th European Conference on Fungal Genetics. 2016. p. 71-71 CS5.

    Publication: Research - peer-reviewConference abstract in proceedings – Annual report year: 2016

  7. Published

    Bacterial evolution in PCD and CF patients follows the same mutational steps. / Madsen Sommer, Lea Mette; Alanin, Mikkel Christian; Marvig, Rasmus L.; Nielsen, Kim Gjerum; Høiby, Niels; Von Buchwald, Christian; Molin, Søren; Johansen, Helle Krogh.

    In: Scientific Reports, Vol. 6, 28732, 2016.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  8. Published

    Barley germination : Spatio-temporal considerations for designing and interpreting 'omics' experiments. / Daneri-Castro, Sergio N.; Svensson, Birte; Roberts, Thomas H.

    In: Journal of Cereal Science, Vol. 70, 2016, p. 29-37.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  9. Published

    Benchmarking of methods for identification of antimicrobial resistance genes in bacterial whole genome data. / Clausen, Philip T. L. C.; Zankari, Ea; Aarestrup, Frank Møller; Lund, Ole.

    In: Journal of Antimicrobial Chemotherapy, Vol. 71, No. 9, 2016, p. 2484-2488.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  10. Published

    Benchtop Whole-Genome Sequencing for Identification of Nosocomial Outbreaks in Tanzania. / Sonda, Tolbert; Kumburu, Happiness; Zwetselaar, Marco van; Ahrenfeldt, Johanne; Alifrangis, Michael; Lund, Ole; Kibiki, Gibson; Aarestrup, Frank Møller.

    In: Infection Control & Hospital Epidemiology, Vol. 37, No. 5, 2016, p. 622-623.

    Publication: Research - peer-reviewComment/debate – Annual report year: 2016

  11. Published

    Biogeography and environmental genomics of the Roseobacter-affiliated pelagic CHAB-I-5 lineage. / Billerbeck, Sara; Wemheuer, Bernd; Voget, Sonja; Poehlein, Anja; Giebel, Helge-Ansgar; Brinkhoff, Thorsten; Gram, Lone; Jeffrey, Wade H.; Daniel, Rolf; Simon, Meinhard.

    In: Nature Microbiology, Vol. 1, No. 7, 16063, 2016.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

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