Department of Systems Biology

  1. 2018
  2. Published

    Timing the Landmark Events in the Evolution of Clear Cell Renal Cell Cancer: TRACERx Renal. / Mitchell, Thomas J.; Turajlic, Samra; Rowan, Andrew; Nicol, David; Farmery, James H.R.; O'Brien, Tim; Martincorena, Inigo; Tarpey, Patrick; Angelopoulos, Nicos; Yates, Lucy R.; Butler, Adam P.; Raine, Keiran; Stewart, Grant D.; Challacombe, Ben; Fernando, Archana; Lopez, Jose I.; Hazell, Steve; Chandra, Ashish; Chowdhury, Simon; Rudman, Sarah; Soultati, Aspasia; Stamp, Gordon; Fotiadis, Nicos; Pickering, Lisa; Au, Lewis; Spain, Lavinia; Lynch, Joanna; Stares, Mark; Teague, Jon; Maura, Francesco; Wedge, David C.; Horswell, Stuart; Chambers, Tim; Litchfield, Kevin; Xu, Hang; Stewart, Aengus; Elaidi, Reza; Oudard, Stéphane; McGranahan, Nicholas; Csabai, Istvan; Gore, Martin; Futreal, P. Andrew; Larkin, James; Lynch, Andy G.; Szallasi, Zoltan ; Swanton, Charles; Campbell, Peter J.

    In: Cell, Vol. 173, No. 3, 2018, p. 611-623.

    Publication: Research - peer-reviewJournal article – Annual report year: 2018

  3. 2017
  4. Published

    Optimized microbial cells for production of melatonin and other compounds. / Luo, Hao (Inventor); Förster, Jochen (Inventor).

    IPC No.: C12P 17/ 10 A I. Patent No.: WO2017167866. Oct 05, 2017.

    Publication: ResearchPatent – Annual report year: 2017

  5. Published

    The effect of three different ad libitum diets for weight loss maintenance : a randomized 18-month trial. / Due, Anette; Larsen, Thomas M.; Mu, Huiling; Hermansen, Kjeld; Stender, Steen; Toubro, Søren; Allison, David B.; Astrup, Arne.

    In: European Journal of Nutrition, Vol. 56, No. 2, 01.03.2017, p. 727-738.

    Publication: Research - peer-reviewJournal article – Annual report year: 2017

  6. Published

    Adhesion of Escherichia coli under flow conditions reveals potential novel effects of FimH mutations. / Feenstra, T.; Schmidt Thøgersen, Mariane; Wieser, E.; Peschel, A.; Ball, M. J.; Brandes, R.; Satchell, S. C.; Stockner, T.; Aarestrup, Frank Møller; Rees, A. J.; Kain, R.

    In: European Journal of Clinical Microbiology & Infectious Diseases, Vol. 36, No. 3, 2017, p. 467-478.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  7. Published

    Analysis of 62 hybrid assembled human Y chromosomes exposes rapid structural changes and high rates of gene conversion. / Gonzalez-Izarzugaza, Jose Maria; Skov, Laurits; Maretty, Lasse; Jensen, Jacob Malte; Petersen, Bent; Andreas Sibbesen, Jonas; Liu, Siyang; Villesen, Palle ; Belling, Kirstine González-Izarzugaza; Theil Have, Christian; Gonzalez-Izarzugaza, Jose Maria; Grosjean, Marie; Bork-Jensen, Jette; Grove, Jakob; Als, Thomas D.; Huang, Shujia; Chang, Yuqi; Xu, Ruiqi; Ye, Weijian ; Rao, Junhua ; Guo, Xiaosen; Sun, Jihua; Cao, Hongzhi; Ye, Chen; van Beusekom, Johan; Espeseth, Thomas; Flindt, Esben; Friborg, Rune M. ; Halager, Anders E.; Le Hellard, Stephanie; Hultman, Christina M.; Lescai, Francesco; Li, Shengting; Lund, Ole; Løngren, Peter; Mailund, Thomas; Matey-Hernandez, María Luisa; Mors, Ole; Pedersen, Christian N. S.; Sicheritz-Pontén, Thomas; Sullivan, Patrick F.; Qaswar Ali Shah, Syed; Westergaard, David; Yadav, Rachita; Li, Ning; Xu, Xun; Hansen, Torben; Krogh, Anders; Bolund, Lars; Sørensen, Thorkild I. A.; Pedersen, Oluf; Gupta, Ramneek; Rasmussen, Simon; Besenbacher, Søren; Børglum, Anders D.; Wang, Jun; Eiberg, Hans; Kristiansen, Karsten; Brunak, Søren; Schierup, Mikkel Heide.

    In: P L o S Genetics, Vol. 13, No. 8, e1006834, 2017.

    Publication: Research - peer-reviewJournal article – Annual report year: 2017

  8. Published

    An extracellular cell-attached pullulanase confers branched α-glucan utilization in human gut Lactobacillus acidophilus. / Møller, Marie Sofie; Goh, Yong Jun; Rasmussen, Kasper Bøwig; Cypryk, Wojciech; Celebioglu, Hasan Ufuk; Klaenhammer, Todd R; Svensson, Birte; Abou Hachem, Maher .

    In: Applied and Environmental Microbiology, Vol. 83, No. 10, AEM.00402-17, 2017.

    Publication: Research - peer-reviewJournal article – Annual report year: 2017

  9. Published

    ArrayPitope: Automated Analysis of Amino Acid Substitutions for Peptide Microarray-Based Antibody Epitope Mapping. / Hansen, Christian Skjødt; Østerbye, Thomas; Marcatili, Paolo; Lund, Ole; Buus, Søren; Nielsen, Morten.

    In: P L o S One, Vol. 12, No. 1, e0168453, 2017.

    Publication: Research - peer-reviewJournal article – Annual report year: 2017

  10. Published

    A safflower oil-based high fat/high-sucrose diet modulates the gut microbiota and liver phospholipid profiles associated with early glucose intolerance in the absence of tissue inflammation. / Danneskiold-Samsøe, Niels Banhos; Andersen, Daniel; Radulescu, Ilinca Daria; Normann-Hansen, Ann; Brejnrod, Asker; Kragh, Marie; Madsen, Tobias; Nielsen, Christian; Josefsen, Knud; Fretté, Xavier; Fjaere, Even; Madsen, Lise; Hellgren, Lars I.; Pedersen, Susanne Brix; Kristiansen, Karsten.

    In: Molecular Nutrition & Food Research, Vol. 61, No. 5, 1600528, 2017.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  11. Published

    A scored human protein-protein interaction network to catalyze genomic interpretation. / Li, Taibo; Wernersson, Rasmus; Hansen, Rasmus B; Horn, Heiko; Mercer, Johnathan; Slodkowicz, Grzegorz; Workman, Christopher T.; Rigina, Olga; Rapacki, Kristoffer; Stærfeldt, Hans Henrik; Brunak, Søren; Jensen, Thomas S.; Lage, Kasper.

    In: Nature Methods, Vol. 14, 2017, p. 61–64.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  12. Published

    Biodiversity of mycobiota throughout the Brazil nut supply chain: From rainforest to consumer. / Taniwaki, Marta H.; Frisvad, Jens Christian; Ferranti, Larissa S.; de Souza Lopes, Aline; Larsen, Thomas Ostenfeld; Fungaro, Maria Helena P.; Iamanaka, Beatriz T.

    In: Food Microbiology, Vol. 61, 2017, p. 14-22.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

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