Department of Systems Biology

  1. 2016
  2. Published

    A Consensus Genome-scale Reconstruction of Chinese Hamster Ovary Cell Metabolism. / Hefzi, Hooman; Ang, Kok Siong; Hanscho, Michael; Bordbar, Aarash; Ruckerbauer, David; Lakshmanan, Meiyappan; Orellana, Camila A.; Baycin-Hizal, Deniz; Huang, Yingxiang; Ley, Daniel; Martinez, Veronica S.; Kyriakopoulos, Sarantos; Jiménez, Natalia E.; Zielinski, Daniel C.; Quek, Lake-Ee; Wulff, Tune; Arnsdorf, Johnny; Li, Shangzhong; Lee, Jae Seong; Paglia, Giuseppe; Loira, Nicolas; Spahn, Philipp N.; Pedersen, Lasse Ebdrup; Gutierrez, Jahir M.; King, Zachary A.; Lund, Anne Mathilde; Nagarajan, Harish; Thomas, Alex; Abdel-Haleem, Alyaa M.; Zanghellini, Juergen; Kildegaard, Helene Faustrup; Voldborg, Bjørn Gunnar; Gerdtzen, Ziomara P.; Betenbaugh, Michael J.; Palsson, Bernhard; Andersen, Mikael Rørdam; Nielsen, Lars K.; Borth, Nicole; Lee, Dong-Yup; Lewis, Nathan E.

    In: Cell Systems, Vol. 3, No. 5, 2016, p. 434-443.e8.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  3. Published

    Adaptive responses to cefotaxime treatment in ESBL-producing Escherichia coli and the possible use of significantly regulated pathways as novel secondary targets. / Møller, Thea S. B.; Rau, Martin Holm; Bonde, Charlotte S; Sommer, Morten Otto Alexander; Guardabassi, Luca; Olsen, John E.

    In: Journal of Antimicrobial Chemotherapy, Vol. 71, No. 9, 2016, p. 2449-2459.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  4. E-pub ahead of print

    Adhesion of Escherichia coli under flow conditions reveals potential novel effects of FimH mutations. / Feenstra, T.; Schmidt Thøgersen, Mariane; Wieser, E.; Peschel, A.; Ball, M. J.; Brandes, R.; Satchell, S. C.; Stockner, T.; Aarestrup, Frank Møller; Rees, A. J.; Kain, R.

    In: European Journal of Clinical Microbiology & Infectious Diseases, 2016.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  5. Published

    A European Database of Fusarium graminearum and F-culmorum Trichothecene Genotypes. / Pasquali, Matias; Beyer, Marco; Logrieco, Antonio; Audenaert, Kris; Balmas, Virgilio; Basler, Ryan; Boutigny, Anne-Laure; Chrpova, Jana; Czembor, Elzbieta; Gagkaeva, Tatiana; Gonzalez-Jaen, Maria; Hofgaard, Ingerd S.; Koycu, Nagehan D.; Hoffmann, Lucien; Levic, Jelena; Marin, Patricia; Miedaner, Thomas; Migheli, Quirico; Moretti, Antonio; Müller, Marina E. H.; Munaut, Francoise; Parikka, Paivi; Pallez-Barthel, Marine; Piec, Jonathan; Scauflaire, Jonathan; Scherm, Barbara; Stankovic, Slavica; Thrane, Ulf; Uhlig, Silvio; Vanheule, Adriaan; Yli-Mattila, Tapani; Vogelgsang, Susanne.

    In: Frontiers in Microbiology, Vol. 7, 406, 2016, p. 1-11.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  6. Published

    A fast and robust method for whole genome sequencing of the Aleutian Mink Disease Virus (AMDV) genome. / Hagberg, Emma Elisabeth; Krarup, Anders; Fahnøe, Ulrik; Larsen, Lars Erik; Dam-Tuxen, Rebekka; Pedersen, Anders Gorm.

    In: Journal of Virological Methods, Vol. 234, 2016, p. 43-51.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  7. Published
  8. Published

    A genomic history of Aboriginal Australia. / Malaspinas, Anna-Sapfo; Westaway, Michael C.; Muller, Craig; Sousa, Vitor C.; Lao, Oscar; Alves, Isabel; Bergström, Anders; Athanasiadis, Georgios; Cheng, Jade Y.; Crawford, Jacob E.; Rasmussen, Simon; Albrechtsen, Anders; Margaryan, Ashot; Moltke, Ida; Korneliussen, Thorfinn S.; Moreno-Mayar, J. Víctor; Sikora, Martin; Brunak, Søren; Campos, Paula F.; Schierup, Mikkel H.; Foley, Robert A.; Lahr, Marta Mirazón; Mailund, Thomas; Nielsen, Rasmus; Willerslev, Eske.

    In: Nature, Vol. 538, No. 7624, 2016, p. 207-214.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  9. Published

    A Drosophila Genome-Wide Screen Identifies Regulators of Steroid Hormone Production and Developmental Timing. / Thomas Danielsen, E.; E. Møller, Morten; Yamanaka, Naoki; Ou, Qiuxiang; Laursen, Janne Marie; Soenderholm, Cæcilie; Zhuo, Ran; Phelps, Brian; Tang, Kevin; Zeng, Jie; Kondo, Shu; H. Nielsen, Christian; Harvald, Eva B.; Faergeman, Nils J.; J. Haley, Macy; A. O'Connor, Kyle; King-Jones, Kirst; B. O'Connor, Michael; F. Rewitz, Kim.

    In: Developmental Cell, Vol. 37, No. 6, 2016, p. 558-570.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  10. Published

    A Rhizobium leguminosarum CHDL- (Cadherin-Like-) Lectin Participates in Assembly and Remodeling of the Biofilm Matrix. / Vozza, Nicolás F.; Abdian, Patricia L; Russo, Daniela M; Mongiardini, Elías J; Lodeiro, Aníbal R; Molin, Søren; Zorreguieta, Angeles.

    In: Frontiers in Microbiology, Vol. 7, 1608, 2016.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  11. Published

    Alcohol dehydrogenase gene ADH3 activates glucose alcoholic fermentation in genetically engineered Dekkera bruxellensis yeast. / Schifferdecker, Anna Judith; Siurkus, Juozas; Andersen, Mikael Rørdam; Jørck-Ramberg, Dorte; Ling, Zhihao; Zhou, Nerve; Blevins, James E.; Sibirny, Andriy A.; Piškur, Jure; Ishchuk, Olena P.

    In: Applied Microbiology and Biotechnology, Vol. 100, No. 7, 2016, p. 3219-3231.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

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