Department of Systems Biology

  1. 2017
  2. Published

    Adhesion of Escherichia coli under flow conditions reveals potential novel effects of FimH mutations. / Feenstra, T.; Schmidt Thøgersen, Mariane; Wieser, E.; Peschel, A.; Ball, M. J.; Brandes, R.; Satchell, S. C.; Stockner, T.; Aarestrup, Frank Møller; Rees, A. J.; Kain, R.

    In: European Journal of Clinical Microbiology & Infectious Diseases, Vol. 36, No. 3, 2017, p. 467-478.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  3. Published

    Analysis of 62 hybrid assembled human Y chromosomes exposes rapid structural changes and high rates of gene conversion. / Gonzalez-Izarzugaza, Jose Maria; Skov, Laurits; Maretty, Lasse; Jensen, Jacob Malte; Petersen, Bent; Andreas Sibbesen, Jonas; Liu, Siyang; Villesen, Palle ; Belling, Kirstine González-Izarzugaza; Theil Have, Christian; Gonzalez-Izarzugaza, Jose Maria; Grosjean, Marie; Bork-Jensen, Jette; Grove, Jakob; Als, Thomas D.; Huang, Shujia; Chang, Yuqi; Xu, Ruiqi; Ye, Weijian ; Rao, Junhua ; Guo, Xiaosen; Sun, Jihua; Cao, Hongzhi; Ye, Chen; van Beusekom, Johan; Espeseth, Thomas; Flindt, Esben; Friborg, Rune M. ; Halager, Anders E.; Le Hellard, Stephanie; Hultman, Christina M.; Lescai, Francesco; Li, Shengting; Lund, Ole; Løngren, Peter; Mailund, Thomas; Matey-Hernandez, María Luisa; Mors, Ole; Pedersen, Christian N. S.; Sicheritz-Pontén, Thomas; Sullivan, Patrick F.; Qaswar Ali Shah, Syed; Westergaard, David; Yadav, Rachita; Li, Ning; Xu, Xun; Hansen, Torben; Krogh, Anders; Bolund, Lars; Sørensen, Thorkild I. A.; Pedersen, Oluf; Gupta, Ramneek; Rasmussen, Simon; Besenbacher, Søren; Børglum, Anders D.; Wang, Jun; Eiberg, Hans; Kristiansen, Karsten; Brunak, Søren; Schierup, Mikkel Heide.

    In: P L o S Genetics, Vol. 13, No. 8, e1006834, 2017.

    Publication: Research - peer-reviewJournal article – Annual report year: 2017

  4. Published

    An extracellular cell-attached pullulanase confers branched α-glucan utilization in human gut Lactobacillus acidophilus. / Møller, Marie Sofie; Goh, Yong Jun; Rasmussen, Kasper Bøwig; Cypryk, Wojciech; Celebioglu, Hasan Ufuk; Klaenhammer, Todd R; Svensson, Birte; Abou Hachem, Maher .

    In: Applied and Environmental Microbiology, Vol. 83, No. 10, AEM.00402-17, 2017.

    Publication: Research - peer-reviewJournal article – Annual report year: 2017

  5. Published

    ArrayPitope: Automated Analysis of Amino Acid Substitutions for Peptide Microarray-Based Antibody Epitope Mapping. / Hansen, Christian Skjødt; Østerbye, Thomas; Marcatili, Paolo; Lund, Ole; Buus, Søren; Nielsen, Morten.

    In: P L o S One, Vol. 12, No. 1, e0168453, 2017.

    Publication: Research - peer-reviewJournal article – Annual report year: 2017

  6. Published

    A safflower oil-based high fat/high-sucrose diet modulates the gut microbiota and liver phospholipid profiles associated with early glucose intolerance in the absence of tissue inflammation. / Danneskiold-Samsøe, Niels Banhos; Andersen, Daniel; Radulescu, Ilinca Daria; Normann-Hansen, Ann; Brejnrod, Asker; Kragh, Marie; Madsen, Tobias; Nielsen, Christian; Josefsen, Knud; Fretté, Xavier; Fjaere, Even; Madsen, Lise; Hellgren, Lars I.; Pedersen, Susanne Brix; Kristiansen, Karsten.

    In: Molecular Nutrition & Food Research, Vol. 61, No. 5, 1600528, 2017.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  7. Published

    A scored human protein-protein interaction network to catalyze genomic interpretation. / Li, Taibo; Wernersson, Rasmus; Hansen, Rasmus B; Horn, Heiko; Mercer, Johnathan; Slodkowicz, Grzegorz; Workman, Christopher T.; Rigina, Olga; Rapacki, Kristoffer; Stærfeldt, Hans Henrik; Brunak, Søren; Jensen, Thomas S.; Lage, Kasper.

    In: Nature Methods, Vol. 14, 2017, p. 61–64.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  8. Published

    Biodiversity of mycobiota throughout the Brazil nut supply chain: From rainforest to consumer. / Taniwaki, Marta H.; Frisvad, Jens Christian; Ferranti, Larissa S.; de Souza Lopes, Aline; Larsen, Thomas Ostenfeld; Fungaro, Maria Helena P.; Iamanaka, Beatriz T.

    In: Food Microbiology, Vol. 61, 2017, p. 14-22.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  9. Accepted/In press

    Breadth of T cell responses after immunization with adenovirus vectors encoding ancestral antigens or polyvalent papillomavirus antigens. / Ragonnaud, Emeline; Pedersen, Anders Gorm; Holst, Peter Johannes.

    In: Scandinavian Journal of Immunology, 2017.

    Publication: Research - peer-reviewJournal article – Annual report year: 2017

  10. E-pub ahead of print

    Breaking confinement: unconventional peptide presentation by major histocompatibility (MHC) class I allele HLA-A*02:01. / Remesh, Soumya G.; Andreatta, Massimo; Ying, Ge; Kaever, Thomas; Nielsen, Morten; McMurtrey, Curtis P.; Hildebrand, William; Peters, Bjoern; Zajonc, Dirk M.

    In: Journal of Biological Chemistry, 2017.

    Publication: Research - peer-reviewJournal article – Annual report year: 2017

  11. Published
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