Department of Systems Biology

  1. 2017
  2. Published

    Adhesion of Escherichia coli under flow conditions reveals potential novel effects of FimH mutations. / Feenstra, T.; Schmidt Thøgersen, Mariane; Wieser, E.; Peschel, A.; Ball, M. J.; Brandes, R.; Satchell, S. C.; Stockner, T.; Aarestrup, Frank Møller; Rees, A. J.; Kain, R.

    In: European Journal of Clinical Microbiology & Infectious Diseases, Vol. 36, No. 3, 2017, p. 467-478.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  3. Published

    ArrayPitope: Automated Analysis of Amino Acid Substitutions for Peptide Microarray-Based Antibody Epitope Mapping. / Hansen, Christian Skjødt; Østerbye, Thomas; Marcatili, Paolo; Lund, Ole; Buus, Søren; Nielsen, Morten.

    In: P L o S One, Vol. 12, No. 1, e0168453, 2017.

    Publication: Research - peer-reviewJournal article – Annual report year: 2017

  4. Published

    A scored human protein-protein interaction network to catalyze genomic interpretation. / Li, Taibo; Wernersson, Rasmus; Hansen, Rasmus B; Horn, Heiko; Mercer, Johnathan; Slodkowicz, Grzegorz; Workman, Christopher T.; Rigina, Olga; Rapacki, Kristoffer; Stærfeldt, Hans Henrik; Brunak, Søren; Jensen, Thomas S.; Lage, Kasper.

    In: Nature Methods, Vol. 14, 2017, p. 61–64.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  5. Published

    Biodiversity of mycobiota throughout the Brazil nut supply chain: From rainforest to consumer. / Taniwaki, Marta H.; Frisvad, Jens Christian; Ferranti, Larissa S.; de Souza Lopes, Aline; Larsen, Thomas Ostenfeld; Fungaro, Maria Helena P.; Iamanaka, Beatriz T.

    In: Food Microbiology, Vol. 61, 2017, p. 14-22.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  6. Accepted/In press

    Breadth of T cell responses after immunization with adenovirus vectors encoding ancestral antigens or polyvalent papillomavirus antigens. / Ragonnaud, Emeline; Pedersen, Anders Gorm; Holst, Peter Johannes.

    In: Scandinavian Journal of Immunology, 2017.

    Publication: Research - peer-reviewJournal article – Annual report year: 2017

  7. E-pub ahead of print

    Breaking confinement: unconventional peptide presentation by major histocompatibility (MHC) class I allele HLA-A*02:01. / Remesh, Soumya G.; Andreatta, Massimo; Ying, Ge; Kaever, Thomas; Nielsen, Morten; McMurtrey, Curtis P.; Hildebrand, William; Peters, Bjoern; Zajonc, Dirk M.

    In: Journal of Biological Chemistry, 2017.

    Publication: Research - peer-reviewJournal article – Annual report year: 2017

  8. Published
  9. Published

    Chromosome-wise Protein Interaction Patterns and Their Impact on Functional Implications of Large-Scale Genomic Aberrations. / Kirk, Isa Kristina; Weinhold, Nils; Belling, Kirstine González-Izarzugaza; Skakkebæk, Niels Erik; Jensen, Thomas Skøt; Leffers, Henrik; Juul, Anders ; Brunak, Søren.

    In: Cell Systems, Vol. 4, No. 3, 2017, p. 357-364.

    Publication: Research - peer-reviewJournal article – Annual report year: 2017

  10. E-pub ahead of print

    Comparative assessment of Vibrio virulence in marine fish larvae. / Rønneseth, A.; Castillo, D.; D'Alvise, Paul; Tønnesen, Ø.; Haugland, G.; Grotkjær, Torben; Engell-Sørensen, K.; Nørremark, L.; Bergh, Ø.; Wergeland, H I; Gram, Lone.

    In: Journal of Fish Diseases, 2017, p. 13.

    Publication: Research - peer-reviewJournal article – Annual report year: 2017

  11. Published

    Comparative Genome Analyses of Vibrio anguillarum Strains Reveal a Link with Pathogenicity Traits. / Castillo, Daniel; D'Alvise, Paul; Xu, Ruiqi; Zhang, Faxing; Middelboe, Mathias; Gram, Lone.

    In: mSystems, Vol. 2, No. 1, 2017.

    Publication: Research - peer-reviewJournal article – Annual report year: 2017

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