Department of Systems Biology

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  1. Improving of Pharmaceutical protein production in S.cerevisiae using advanced chromosomal gene integration methods

    Jensen, M. M., Mortensen, U. H. & Gunnarsson, N.

    01-05-13 → 30-04-16

    Project: PhD

  2. Integrative Network Biology Study of Cancer Cell Invasion Associated Signaling

    Radetskaya, O., Linding, R., Longden, J. & Erler, J.

    15-04-13 → 14-04-16

    Project: PhD

  3. Resistance and susceptibility of the building envelope to fungal growth

    Andersen, B., Lewinska, A. M., Rode, C. & Peuhkuri, R. H.

    01-04-13 → 01-04-16

    Project: PhD

  4. Probiotic bacteria in fish larvae cultures

    Grotkjær, T., Gram, L. & D'Alvise, P.

    01-04-13 → 31-03-16

    Project: PhD

  5. Resistance and susceptibility of the building envelope to fungal growth

    Lewinska, A., Rode, C., Nielsen, J. B., Peuhkuri, R. H. & Andersen, B.

    01-04-13 → 31-03-16

    Project: PhD

  6. The presence of spores, micro-particles and metabolites in the indoor environment

    Andersen, B., Dosen, I., Nielsen, K. F. & Clausen, G.

    01-03-13 → 01-03-16

    Project: PhD

  7. Development of Yeast Cell Factory for Reservatrol Production by Yeast

    Li, M., Nielsen, J. & Borodina, I.

    01-03-13 → 29-02-16

    Project: PhD

  8. Standardization of DNA Vector Design-Processes

    Cavaleiro, A. M., Nørholm, M. & Nielsen, A. T.

    01-03-13 → 29-02-16

    Project: PhD

  9. The preescence of spores, micro-particles and metabolites in the indoor environment

    Dosen, I., Nielsen, K. F., Clausen, G. & Andersen, B.

    01-03-13 → 29-02-16

    Project: PhD

  10. Development of a Platform Yeast Cell Factory for Production of Aromatic Chemicals

    Rodriguez Prado, E. A., Nielsen, J. & Borodina, I.

    01-02-13 → 31-01-16

    Project: PhD

  11. Molecular Interactions of Probiotics with Extracts fra Medicinal Plants, Oligosaccharides and Adhesion to Mucin: Cell Wall and Membrane Proteome Analysis, Protein Structure and Function

    Celebioglu, H. U., Abou Hachem, M., Svensson, B. & Jacobsen, S.

    01-02-13 → 31-01-16

    Project: PhD

  12. Opdagelse af bioaktive marine naturstoffer

    Kildgaard, S., Nielsen, K. F. & Larsen, T. O.

    15-01-13 → 14-01-16

    Project: PhD

  13. Pharmacogenomics and personalized medicine in the treatment of ADHD

    Nzabonimpa, G. S., Brunak, S. & Taboureau, O.

    15-01-13 → 14-01-16

    Project: PhD

  14. Biiosensors and genetic circuits for improved cell factory development

    Rugbjerg, P., Förster, J. & Sommer, M.

    15-12-12 → 14-12-15

    Project: PhD

  15. Deciphering complex regulatory traits relating to host metabolism and immunity

    Laursen, J. M., Hellgren, L., Workman, C. & Pedersen, S. B.

    15-12-12 → 14-12-15

    Project: PhD

  16. Exploitation of fungal cell factories for pigment production

    Nymschefsky, G., Thykær, J. & Thrane, U.

    15-12-12 → 14-12-15

    Project: PhD

  17. Exploring the activity and mode of action of novel starch-specific lytic polysaccharide oxidases

    Nekiunaite, L., Abou Hachem, M., Svensson, B. & Vaaje-Kolstad, G.

    15-12-12 → 14-12-15

    Project: PhD

  18. Human Personality - Identification of important genotypic and phenotypic factors for the development of an individual's personality

    Wolffhechel, K. M. B., Jarmer, H. Ø. & Pedersen, A. G.

    15-12-12 → 14-12-15

    Project: PhD

  19. Identification of serum biomarkers with the ability to predict neurodegenerative changes and segment according to diagnosis

    Inekci, D., Svensson, B., Jacobsen, S. & Hägglund, P.

    15-12-12 → 14-12-15

    Project: PhD

  20. Identification of the features contributing to immunodominance

    Trolle, T., Nielsen, M. & Lund, O.

    15-12-12 → 14-12-15

    Project: PhD

  21. Methods for individualized predictive patient stratification in type 2 diabetes

    Pedersen, H. K. & Brunak, S.

    15-12-12 → 14-12-15

    Project: PhD

  22. Microbial Community Interactions in Arctic Environments using a Metagenomics Approach

    Hauptmann, A. Z. E. L., Blom, N. & Bælum, J.

    15-12-12 → 14-12-15

    Project: PhD

  23. Revealing the pathophysiology of multiple chemical sensitivity; Immunologic response and gene expression profiling of individuals suffering from multiple chemical sensitivity after a controlled chemical exposure

    Dantoft, T. M., Skovbjerg, S., Hellgren, L. & Engkilde, K.

    15-12-12 → 14-06-15

    Project: PhD

  24. Systems biology of diseases and their co-morbidities

    Beck, M. K. & Brunak, S.

    15-12-12 → 14-12-15

    Project: PhD

  25. Thiol Redox Control Systems in Lactic Acid Bacteria

    Skjoldager, N., Svensson, B., Jacobsen, S. & Hägglund, P.

    15-12-12 → 14-12-15

    Project: PhD

  26. Microbial platform for expression of membrane integrated enzymes and sustainable production of high value chemicals

    Madsen, K. M., Nørholm, M. & Nielsen, A. T.

    01-12-12 → 30-11-15

    Project: PhD

  27. Production of organic acids in Gram - positive bacteria

    Shen, J., Solem, C. & Jensen, P. R.

    01-12-12 → 30-11-15

    Project: PhD

  28. Therapeutic applications of cancer type-specific mutation patterns

    Marquard, A. M., Birkbak, N. J., Eklund, A. C. & Szallasi, Z. I.

    01-12-12 → 30-11-15

    Project: PhD

  29. Engineering Alfa-glucan-active GH13 enzymes as tools for bio-engineering of starch and related alfa-glucans and specific inhibitor recognition

    Andersen, S., Abou Hachem, M. & Svensson, B.

    01-11-12 → 31-10-15

    Project: PhD

  30. Improving second generation biorefinery processes using clues from stress response in Lactococcus lactis

    Hviid, A. M., Jensen, P. R. & Kilstrup, M.

    15-10-12 → 14-10-15

    Project: PhD

  31. Uncovering the dark-matter of metagenomics - studies of mammalian microbiomes

    Plichta, D. R., Nielsen, H. B. & Juncker, A.

    15-10-12 → 14-10-15

    Project: PhD

  32. Colorful Microbial Cell Factories

    Petersen, P. D., Mortensen, U. H. & Thrane, U.

    01-10-12 → 30-09-15

    Project: PhD

  33. Diversity of the Microflora in Cystiv Fibrosis Airways

    Madsen, L. M., Jelsbak, L., Sommer, M. & Molin, S.

    01-10-12 → 30-09-15

    Project: PhD

  34. Regulation of Host Metabolism by the Gut Microbiota

    Andersen, D., Hellgren, L. & Pedersen, S. B.

    01-10-12 → 30-09-15

    Project: PhD

  35. The natural habitats and artificial niches of indoor fungi

    Andersen, B.

    17-09-12 → 17-09-16

    Project

  36. Optimization of processing conditions for biomass conversion to green chemical production

    Andersen, J. J., Frisvad, J. C., Andersen, B. & Lübeck, M.

    15-09-12 → 15-09-15

    Project: PhD

  37. Discovery of novel fungal enzymes and metabolites for accelerated biomass conversion

    Hansen, G. H., Andersen, B., Frisvad, J. C. & Lübeck, M.

    15-09-12 → 15-09-15

    Project: PhD

  38. Discovery of novel fungal enzymes and metabolites for accelerated biomass conversion

    Hansen, G. H., Frisvad, J. C., Andersen, B. & Lübeck, M.

    15-09-12 → 14-09-15

    Project: PhD

  39. Optimization of processing conditions for green chemical production

    Andersen, J. J., Frisvad, J. C., Andersen, B. & Lübeck, M.

    15-09-12 → 14-09-15

    Project: PhD

  40. Analysis of the T cell immune response in Yellow fever virus and HIV infections

    Frederiksen, J. W., Nielsen, M. & Lund, O.

    01-09-12 → 31-08-15

    Project: PhD

  41. Evolutionary modifications of gene regulatory networks in pseudomonas aeruginosa during long-term growth in human hosts

    Andresen, E. K. & Jelsbak, L.

    01-08-12 → 31-07-15

    Project: PhD

  42. Evolutionary modifications of gene regulatory networks in pseudomonas aeruginosa during long-term growth in human hosts

    Andresen, E. K. & Jelsbak, L.

    01-08-12 → 31-07-15

    Project: PhD

  43. Prediction of antigen_BCR interactions based on high throughput peptide chip data and prediction of MHC-peptide-TCR Interactions

    Hansen, C. S., Lund, O. & Lund, O.

    01-08-12 → 31-07-15

    Project: PhD

  44. Completed

    Skimmelsvampe i Grønland

    Andersen, B. & Rode, C.

    29-07-12 → 04-08-12

    Project

  45. A riboswitch based method for in vivo selection of biocatalysts from large libraries

    Genee, H. J. & Sommer, M.

    01-07-12 → 30-06-15

    Project: PhD

  46. A systems biology approach for type 2 diabetes patient stratification using mulitple date types

    Gudmundsdottir, V. & Brunak, S.

    01-07-12 → 30-06-15

    Project: PhD

  47. Development of new efficient fungalgene expression systems

    Nødvig, C. S. & Mortensen, U. H.

    01-07-12 → 30-06-15

    Project: PhD

  48. Algal analytical natural product chemistry

    Rasmussen, S. A., Nielsen, K. F. & Larsen, T. O.

    01-06-12 → 31-05-15

    Project: PhD

  49. Development of new metabolic engineering technologies for the production of biochemicals

    Ronda, C., Nielsen, A. T. & Molin, S.

    01-06-12 → 31-05-15

    Project: PhD

  50. System-wide studies of cell biology of CHO cells

    Lund, A. M., Mortensen, U. H., Andersen, M. R. & Kildegaard, H. F.

    01-06-12 → 31-05-15

    Project: PhD

  51. The potential of Latic Acid Bacteria as microbial factory for pentanol isomer production

    Imbæk, K., Jørgensen, S. T., Jensen, P. R., Købmann, B. & Martinussen, J.

    01-06-12 → 31-05-15

    Project: PhD

  52. Identification of disease relevant post translational modifications of proteins in pulmonary fibrosis as novel biochemical marker targets

    Kristensen, J. H., Svensson, B., Leeming, D. J., Jacobsen, S. & Hägglund, P.

    01-05-12 → 30-04-15

    Project: PhD

  53. Machine Learning and Oncoviral Genomics

    Friis-Nielsen, J., Brunak, S., Blom, N. & Sicheritz-Pontén, T.

    01-05-12 → 30-04-15

    Project: PhD

  54. Using transcriptomics and mammalian cell line engineering for optimizing biopharm production

    Kaas, C. S., Andersen, M. R. & Kristensen, C.

    01-05-12 → 30-04-15

    Project: PhD

  55. A novel method for optimization of cell factories and increased inhibitor - tolerance by CHIP - MAGE - a novel method for modulating the expression level of multiple targeted genes in cell libraries

    Bonde, M. & Sommer, M.

    15-03-12 → 20-06-15

    Project: PhD

  56. Comprehensive Proteomiics of Streptococcus thermophilus in Industrial Dairy Products

    Pedersen, T. D., Ussery, D. & Danielsen, M.

    15-03-12 → 14-03-15

    Project: PhD

  57. Microfluidic monitoring of programmed cell death in living plant tissue

    Mark, C., Dufva, M. & Finnie, C.

    01-02-12 → 31-01-15

    Project: PhD

  58. Development of a yeast cell factory for compactin production and derivatization by using synthetic biology and combination biochemistry tools

    Rems, A., Frandsen, R. J. N. & Mortensen, U. H.

    15-01-12 → 14-01-15

    Project: PhD

  59. Effektiviseret kontrol af fersk kød med ultrahurtig Salmonella-test

    Josefsen, M. H., Hoorfar, J., Bang-Berthelsen, I., Søndergaard, M. S. R. & Christensen, J.

    01-01-12 → 30-06-14

    Project

  60. Glyco-optimization of recombinant antibodies in CHO cell through metabolic engineering approach

    Fan, Y., Weilguny, D., Sen, J. W., Mortensen, U. H., Andersen, M. R. & Müller, C.

    01-01-12 → 31-12-14

    Project: PhD

  61. Prediction of wild-type protein characteristics from sequence data

    Geertz-Hansen, H. M., Blom, N., Petersen, T. N. & Kiemer, L.

    01-01-12 → 31-12-14

    Project: PhD

  62. Lactic Acid Bacteria as a new platform for sustainable production of biochemicals

    Kabat, A. M., Jensen, P. R. & Martinussen, J.

    15-12-11 → 14-12-14

    Project: PhD

  63. Udvikling af featurebaseret in silico-metoder til diskrimination af celle-medierende immunogene T-celleproteiner og celle-medierende medierede immunodominate T-celle epitoper

    Mattsson, A. H., Møller, N. I., Poznansky, M. C. & Nielsen, M.

    15-12-11 → 14-12-14

    Project: PhD

  64. Aptameric Biosensor Arrays for Metabolic Engineering

    Lauridsen, L. H., Sommer, M. & Nielsen, A. T.

    01-12-11 → 30-11-14

    Project: PhD

  65. Effects of emulgating dietary fat with dairy phospholipids on establishment of the gut microbiota

    Bennike, R. M. G., Licht, T. R. & Hellgren, L.

    01-12-11 → 30-11-14

    Project: PhD

  66. Multivariate and multi-target analysis of UHPLC-TOFMS data for linking of fungal metabolites to their biosynthetic genes and for revealing of crosstalk between pathways

    Klitgaard, A., Nielsen, K. F. & Andersen, M. R.

    01-12-11 → 30-11-14

    Project: PhD

  67. Elucidating and comparing flux regulation across bacterial species

    Chan, S. H. J., Solem, C. & Jensen, P. R.

    15-11-11 → 14-11-14

    Project: PhD

  68. Characterization of a high-temperature adaptive Lactococcus lactis mutant and it´s applivation in milk fermentation

    Chen, J., Solem, C. & Jensen, P. R.

    01-11-11 → 31-10-13

    Project: PhD

  69. Discovery and engineering of biosynthetic pathways of filamentous fungi using approaches based on compartmentalization, combinatorial genetics and synthetic biology

    Anyaogu, D. C., Mortensen, U. H. & Workman, M.

    01-11-11 → 31-10-14

    Project: PhD

  70. Protein-RNA interactions

    Garde, C., Gorodkin, J. & Workman, C.

    01-11-11 → 31-10-14

    Project: PhD

  71. Regulation of RNA expression in solid tumors

    Favero, F., Eklund, A. C. & Szallasi, Z. I.

    01-11-11 → 31-10-14

    Project: PhD

  72. Translational informatics in Toxicology

    Jacobsen, U. P. & Taboureau, O.

    01-11-11 → 31-10-14

    Project: PhD

  73. NYMIND

    Andersen, B.

    03-10-11 → …

    Project

  74. Exploring the Human Gut Microbiota: Interactions, Stabillity and Antibiotic Resistance

    Gumpert, H. & Sommer, M.

    01-10-11 → 30-09-14

    Project: PhD

  75. Phylogenomics approaches for enzyme discovery

    Özen, A. I., Sicheritz-Pontén, T. & Pedersen, A. G.

    01-10-11 → 30-09-14

    Project: PhD

  76. Selection of protective antigens in Lawsonia intracellularis by reverse vaccinology

    Jungersen, G., Riber, U., Hvass, H. C., Vadekær, D. F. & Lundegaard, C.

    01-10-11 → 30-09-14

    Project

  77. Linking of fungal secondary metabolites and pathways to their synthase genes

    Petersen, L. M., Nielsen, J. B., Larsen, T. O. & Gotfredsen, C. H.

    15-09-11 → 14-09-14

    Project: PhD

  78. Looking at diseases through Systems chemical biology

    Wich, L., Taboureau, O. & Oprea, T.

    15-09-11 → 14-09-14

    Project: PhD

  79. Analysis of regulatory mutations in bacteria following long term growth in human hosts

    Thøgersen, J. C., Jelsbak, L. & Molin, S.

    01-08-11 → 31-07-14

    Project: PhD

  80. Regulation of Pigment Production in Fungi

    Rasmussen, K. B., Mortensen, U. H. & Thrane, U.

    01-08-11 → 31-07-14

    Project: PhD

  81. Target profilling of drugs

    Kringelum, J. V. & Lund, O.

    15-07-11 → 14-07-14

    Project: PhD

  82. Completed

    A systems biology approach towards identification of predictive biomarkers in colorectal cancer

    Damgaard, T., Gupta, R. & Stenvang, J.

    01-06-11 → 28-02-13

    Project: PhD

  83. Liquid Chromatography-mass spectrometric based metabolomics

    Magdenoska, O., Nielsen, K. F. & Thykær, J.

    01-06-11 → 31-01-15

    Project: PhD

  84. Protein production in yeast

    Schalén, M., Petrushina, I. & Eliasson Lantz, A.

    01-06-11 → 31-05-14

    Project: PhD

  85. Regulation of oxidative DNA damage repair

    Altintas, A. & Workman, C.

    01-06-11 → 31-05-14

    Project: PhD

  86. Nutritional Systems Biology

    Jensen, K. & Kouskoumvekaki, I.

    01-05-11 → 30-04-14

    Project: PhD

  87. Yeast biofilm development and drug tolerance

    Bojsen, R. K., Folkesson, A. & Regenberg, B.

    15-04-11 → 14-04-14

    Project: PhD

  88. Betingelser for skimmelsvampevækst på byggematerialer

    Andersen, B., Møller, E. B., Rode, C. & Peuhkuri, R. H.

    04-04-11 → …

    Project

  89. Chemotherapy Resistance in Breast Cancer: Identification and Validation of Predictive Markers

    Ehlers, N. S., Gupta, R. & Brünner, N.

    01-03-11 → 28-02-14

    Project: PhD

  90. GC-MS based fluxomics using 13C and 15N labelled substrates

    Knudsen, P. B., Nielsen, K. F. & Thykær, J.

    01-03-11 → 31-07-14

    Project: PhD

  91. Characterising Phosphorylation Network Dynamics in Colon Cancer Metastasis

    Schoof, E., Brunak, S. & Linding, R.

    01-02-11 → 31-01-14

    Project: PhD

  92. Differential annotation and subcellular localization of proteins

    Rubio García, A., Gupta, R., Nielsen, H., Sicheritz-Pontén, T. & Jensen, T. S.

    01-02-11 → 31-12-13

    Project: PhD

  93. Finding determinants of kinase specificity and kinase-substrate network rewiring in cancer

    Creixell, P., Brunak, S. & Linding, R.

    01-02-11 → 30-06-13

    Project: PhD

  94. Metagenomic systems biology of the human oral microbiome

    Bonde, I. & Sicheritz-Pontén, T.

    01-02-11 → 31-01-14

    Project: PhD

  95. Novel methods for assignment of protein function

    Vesth, T. C., Ussery, D. & Lagesen, K.

    01-02-11 → 31-01-14

    Project: PhD

  96. Studying the human microbiome and antibiotic resistance

    Munck, C. & Sommer, M.

    01-02-11 → 31-01-14

    Project: PhD

  97. Systems Biology of Childhood Asthma

    Yadav, R. & Gupta, R.

    01-02-11 → 14-01-14

    Project: PhD

  98. Diversity Generation in Evolving Microbial population

    Markussen, T., Jelsbak, L. & Molin, S.

    15-01-11 → 14-01-14

    Project: PhD

  99. Predicting individual response and resistance to VEGFR/mTOR pathway therapeutic intervention using biomarkers discovered through tumour functional genomics

    Johansen, U.

    01-01-11 → 31-12-13

    Project

  100. MICROBESE – A novel approach to the study of the intestinal microbial ecosystem and its putative role in obesity development

    Bergström, A., Licht, T. R., Bro, R., Skov, T. H. & Michaelsen, K. F.

    01-01-11 → 20-09-13

    Project

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