1. 2014
  2. Published
  3. Published
  4. 2013
  5. Published

    Basic and applied uses of genome-scale metabolic network reconstructions of Escherichia coli.. / McCloskey, Douglas; Palsson, Bernhard; Feist, Adam.

    In: Molecular Systems Biology, Vol. 9, 2013, p. 661.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  6. Published

    Community structure and function of high-temperature chlorophototrophic microbial mats inhabiting diverse geothermal environments. / Klatt, Christian G.; Inskeep, William P. ; Herrgard, Markus; Jay, Zackary J. ; Rusch, Douglas B. ; Tringe, Susannah G.; Parenteau, M. Niki; Ward, DavidM.; Boomer, Sarah M.; Bryant, Donald A.; Miller, Scott R.

    In: Frontiers in Microbiology, Vol. 4, 106, 2013.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  7. Published
  8. Published

    Crystal ball - 2013.. / Curtis, Tom; Daran, Jean-Marc; Pronk, Jack T; Frey, Joachim; Jansson, Janet K; Robbins-Pianka, Adam; Knight, Rob; Schnürer, Anna; Smets, Barth F.; Smid, E J; Abee, T; Vicente, Miguel; Zengler, Karsten.

    In: Microbial Biotechnology, Vol. 6, No. 1, 2013, p. 3-16.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  9. Published

    Experimental Approaches for Defining Functional Roles of Microbes in the Human Gut. / Dantas, Gautam; Sommer, Morten; Degnan, Patrick H. ; Goodman, Andrew L.

    In: Annual Review of Microbiology, Vol. 67, 2013, p. 459-475.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  10. Published

    From physiology to systems metabolic engineering for the production of biochemicals by lactic acid bacteria. / Gaspar, Paula; Carvalho, Ana L.; Vinga, Susana; Santos, Helena; Neves, Ana Rute.

    In: Biotechnology Advances, Vol. 31, No. 6, 2013, p. 764-788.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  11. Published

    Genomic landscapes of Chinese hamster ovary cell lines as revealed by the Cricetulus griseus draft genome.. / Lewis, Nathan E; Liu, Xin; Li, Yuxiang; Nagarajan, Harish; Yerganian, George; O'Brien, Edward; Bordbar, Aarash; Roth, Anne M; Rosenbloom, Jeffrey; Bian, Chao; Xie, Min; Chen, Wenbin; Li, Ning; Baycin-Hizal, Deniz; Latif, Haythem; Förster, Jochen; Betenbaugh, Michael; Famili, Iman; Xu, Xun; Wang, Jun; Palsson, Bernhard O.

    In: Nature biotechnology, Vol. 31, 2013, p. 759-765.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  12. Published

    Heterologous expression and purification of an active human TRPV3 ion channel. / Kol, Stefan; Braun, Christian; Thiel, Gerhard; Doyle, Declan A.; Sundström, Michael; Gourdon, Pontus; Nissen, Poul.

    In: F E B S Journal, Vol. 280, No. 23, 2013, p. 6010-6021.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  13. Published

    Improved production of membrane proteins in Escherichia coli by selective codon substitutions. / Nørholm, Morten H.H.; Toddo, Stephen; Virkki, Minttu T.I.; Light, Sara; von Heijne, Gunnar; Daley, Daniel O.

    In: FEBS Letters, Vol. 587, No. 15, 2013, p. 2352-2358.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  14. Published

    Mathematical model of fructan biosynthesis and polymer length distribution in plants. / Rasmussen, Gitte Susanne; Thornley, John H. M.; Parsons, Anthony J.; Harrison, Scott James.

    In: Annals of Botany, Vol. 111, No. 6, 2013, p. 1219-1231.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  15. Published

    Metagenome sequence analysis of filamentous microbial communities obtained from geochemically distinct geothermal channels reveals specialization of three aquificales lineages.. / Takacs-Vesbach, Cristina; Inskeep, William P; Jay, Zackary J; Herrgard, Markus; Rusch, Douglas B; Tringe, Susannah G; Kozubal, Mark A; Hamamura, Natsuko; Macur, Richard E; Fouke, Bruce W; Reysenbach, Anna-Louise; McDermott, Timothy R; Jennings, Ryan deM; Hengartner, Nicolas W; Xie, Gary.

    In: Frontiers in Microbiology, Vol. 4, 84, 2013.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  16. Published

    Microorganisms for the production of 5-hydroxytryptophan. / Knight, Eric Michael (Inventor); Zhu, Jiangfeng (Inventor); Förster, Jochen (Inventor); Luo, Hao (Inventor).

    IPC No.: C12N1/21; C12N15/53; C12N15/55. Patent No.: WO2013127914. Sep 06, 2013.

    Publication: ResearchPatent – Annual report year: 2013

  17. Published

    Microorganisms for the production of melatonin. / Knight, Eric Michael (Inventor); Zhu, Jiangfeng (Inventor); Förster, Jochen (Inventor); Luo, Hao (Inventor).

    IPC No.: C12N1/21; C12N15/53; C12N15/54. Patent No.: WO2013127915. Sep 06, 2013.

    Publication: ResearchPatent – Annual report year: 2013

  18. Published

    Multi-scale modeling for sustainable chemical production. / Zhuang, Kai; Bakshi, Bhavik R.; Herrgard, Markus.

    In: Biotechnology Journal, Vol. 8, No. 9, 2013, p. 973-984.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  19. Published

    Optimizing Cofactor Specificity of Oxidoreductase Enzymes for the Generation of Microbial Production Strains—OptSwap. / King, Zachary A.; Feist, Adam.

    In: Industrial Biotechnology, Vol. 9, No. 4, 2013, p. 236.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  20. Published

    Phylogenetic and Functional Analysis of Metagenome Sequence from High-Temperature Archaeal Habitats Demonstrate Linkages between Metabolic Potential and Geochemistry.. / Inskeep, William P; Jay, Zackary J; Herrgard, Markus; Kozubal, Mark A; Rusch, Douglas B; Tringe, Susannah G; Macur, Richard E; Jennings, Ryan deM; Boyd, Eric S; Spear, John R; Roberto, Francisco F.

    In: Frontiers in Microbiology, Vol. 4, 2013, p. 95.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  21. Published

    The Uses and Future Prospects of Metabolomics and Targeted Metabolite Profiling in Cell Factory Development. / Harrison, Scott James; Herrgard, Markus.

    In: Industrial Biotechnology, Vol. 9, No. 4, 2013, p. 196-202.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  22. Published

    The YNP metagenome project : Environmental parameters responsible for microbial distribution in the Yellowstone geothermal ecosystem. / Inskeep, William P.; Jay, Zackary J.; Tringe, Susannah G.; Herrgard, Markus; B. Rusch, Douglas.

    In: Frontiers in Microbiology, Vol. 4, 67, 2013.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  23. 2012
  24. Published
  25. Published

    Application of split-green fluorescent protein for topology mapping membrane proteins in Escherichia coli. / Toddo, Stephen; Soderstrom, Bill; Palombo, Isolde; von Heijne, Gunnar; Nørholm, Morten; Daley, Daniel O.

    In: Protein Science, Vol. 21, No. 10, 2012, p. 1571-1576.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  26. Published

    Choosing the right platform for the right product: Sustainable production of chemicals in microbial cell factories. / Herrgard, Markus.

    2012. Abstract from Chemical engineering at the Life science interface conference, Sheffield, United Kingdom.

    Publication: Research - peer-reviewConference abstract for conference – Annual report year: 2012

  27. Published

    Context matters — the complex interplay between resistome genotypes and resistance phenotypes. / Dantas, Gautam; Sommer, Morten.

    In: Current Opinion in Microbiology, Vol. 15, No. 5, 2012, p. 577-582.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  28. Published

    Insights into physiological traits of Bifidobacterium animalis subsp. lactis BB-12 through membrane proteome analysis. / Gilad, Ofir; Hjernø, Karin; Østerlund, Eva Christina; Margolles, Abelardo; Svensson, Birte; Stuer-Lauridsen, Birgitte; Møller, Anders Laurell Blom; Jacobsen, Susanne.

    In: Journal of Proteomics, Vol. 75, No. 4, 2012, p. 1190-1200.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  29. Published
  30. Published

    Metabolic engineering of Saccharomyces cerevisiae for optimizing 3HP production. / Jensen, Niels Bjerg; Maury, Jerome; Oberg, Fredrik; Kildegaard, Kanchana Rueksomtawin; Forster, Jochen; Nielsen, Jens; Borodina, Irina.

    In: New Biotechnology, Vol. 29s, 2012, p. s61.

    Publication: Research - peer-reviewConference abstract in journal – Annual report year: 2013

  31. Published

    Peptide‐MHC class I stability is a better predictor than peptide affinity of CTL immunogenicity. / Harndahl, Mikkel Nors; Rasmussen, Michael; Roder, Gustav; Dalgaard Pedersen, Ida; Sørensen, Mikael; Nielsen, Morten; Buus, Søren.

    In: European Journal of Immunology, Vol. 42, No. 6, 2012, p. 1405-1416.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  32. Published

    The Shared Antibiotic Resistome of Soil Bacteria and Human Pathogens. / Forsberg, Kevin J.; Reyes, Alejandro; Wang, Bin; Selleck, Elizabeth M.; Sommer, Morten O. A.; Dantas, Gautam.

    In: Science, Vol. 337, No. 6098, 2012, p. 1107-1111.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  33. 2011
  34. Published

    Antibiotics and the resistant microbiome. / Sommer, Morten; Dantas, Gautam.

    In: Current Opinion in Microbiology, Vol. 14, No. 5, 2011, p. 556-563.

    Publication: Research - peer-reviewJournal article – Annual report year: 2011

  35. Published

    Production of Metabolites. / Katz, Michael (Inventor); Durhuus, Thomas (Inventor); Smits, Hans Peter (Inventor); Förster, Jochen (Inventor).

    Patent No.: WO2011147818. Dec 01, 2011.

    Publication: ResearchPatent – Annual report year: 2012

  36. 2010
  37. Published

    An Onion Byproduct Affects Plasma Lipids in Healthy Rats. / Roldan-Marin, E.; Jensen, R. I.; Krath, Britta; Kristensen, Mette; Poulsen, Morten; Cano, M.P.; Sanchez-Moreno, C.; Dragsted, L.O.

    In: Journal of Agricultural and Food Chemistry, Vol. 58, No. 9, 2010, p. 5308-5314.

    Publication: Research - peer-reviewJournal article – Annual report year: 2010

  38. Published

    Hybrid dynamic modeling of Escherichia coli central metabolic network combining Michaelis–Menten and approximate kinetic equations. / Costa, Rafael S.; Machado, Daniel; Rocha, Isabel; Ferreira, Eugénio C.

    In: BioSystems, Vol. 100, No. 2, 2010, p. 150-157.

    Publication: Research - peer-reviewJournal article – Annual report year: 2010

  39. Published

    NMR and interval PLS as reliable methods for determination of cholesterol in rodent lipoprotein fractions. / Kristensen, Mette; Savorani, Francesco; Ravn-Haren, Gitte; Poulsen, Morten; Markowski, Jaroslaw; Larsen, Flemming H.; Dragsted, Lars O.; Engelsen, Søren B.

    In: Metabolomics, Vol. 6, No. 1, 2010, p. 129-136.

    Publication: Research - peer-reviewJournal article – Annual report year: 2010

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