1. 2014
  2. Published
  3. In press
  4. Published

    A sustainable route to produce the scytonemin precursor using Escherichia coli. / Malla, Sailesh; Sommer, Morten O. A.

    In: Green Chemistry, Vol. 16, No. 6, 2014, p. 3255-3265.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  5. Published

    Biosynthesis of Phenylnannolone A, a Multidrug Resistance Reversal Agent from the Halotolerant Myxobacterium Nannocystis pusilla B150. / Bouhired, Sarah M.; Crüsemann, Max; Almeida, Celso; Weber, Tilmann; Piel, Jörn; Schäberle, Till F.; König, Gabriele M.

    In: ChemBioChem, Vol. 15, No. 5, 2014, p. 757-765.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  6. Published

    Determining the Control Circuitry of Redox Metabolism at the Genome-Scale. / Federowicz, Stephen; Kim, Donghyuk; Ebrahim, Ali; Lerman, Joshua; Nagarajan, Harish; Cho, Byung-kwan; Zengler, Karsten; Palsson, Bernhard.

    In: P L o S Genetics, Vol. 10, No. 4, e1004264, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  7. Accepted

    Direct Mutagenesis of Thousands of Genomic Targets using Microarray-derived Oligonucleotides. / Bonde, Mads; Kosuri, Sriram; Genee, Hans Jasper; Sarup-Lytzen, Kira; Church, George M.; Sommer, Morten; Wang, Harris H.

    In: A C S Synthetic Biology, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  8. Accepted
  9. Published
  10. Published

    How to Fight Back Against Antibiotic Resistance. / Dantas, Gautam; Sommer, Morten.

    In: American Scientist, Vol. 102, No. 1, 2014, p. 42-51.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  11. Published

    Human Intestinal Cells Modulate Conjugational Transfer of Multidrug Resistance Plasmids between Clinical Escherichia coli Isolates.. / Machado, Ana Manuel; Sommer, Morten.

    In: P L o S One, Vol. 9, No. 6, 2014, p. e100739.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  12. Published

    Identification of genes specifically required for the anaerobic metabolism of benzene in Geobacter metallireducens. / Zhang, Tian; Tremblay, Pier-Luc; Chaurasia, Akhilesh Kumar; Smith, Jessica A.; Bain, Timothy S.

    In: Frontiers in Microbiology, Vol. 5, 245, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  13. Published

    Loss of Social Behaviours in Populations of Pseudomonas aeruginosa Infecting Lungs of Patients with Cystic Fibrosis. / Jiricny, Natalie; Molin, Søren; Foster, Kevin; Diggle, Stephen P.; Scanlan, Pauline D.; Ghoul, Melanie; Johansen, Helle Krogh; Santorelli, Lorenzo A.; Popat, Roman; West, Stuart A.; Griffin, Ashleigh S.

    In: P L o S One, Vol. 9, No. 1, 2014, p. Article No.: e83124.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  14. Published

    Microbiology: Barriers to the spread of resistance. / Sommer, Morten.

    In: Nature, 2014, p. 567–568.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  15. E-pub ahead of print

    MODEST: a web-based design tool for oligonucleotide-mediated genome engineering and recombineering. / Bonde, Mads; Klausen, Michael S.; Anderson, Mads Valdemar; Nilsson Wallin, Annika; Wang, Harris H.; Sommer, Morten.

    In: Nucleic Acids Research, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  16. Published
  17. Published

    Secreted single‐stranded DNA is involved in the initial phase of biofilm formation by Neisseria gonorrhoeae. / Zweig, Maria; Schork, Sabine; Koerdt, Andrea; Siewering, Katja; Sternberg, Claus; Thormann, Kai; Albers, Sonja‐Verena; Molin, Søren; Does, Chris, van der.

    In: Environmental Microbiology, Vol. 16, No. 4, 2014, p. 1040-1052.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  18. E-pub ahead of print
  19. Published

    Trash to treasure: Production of biofuels and commodity chemicals via syngas fermenting microorganisms. / Latif, Haythem; Zeidan, Ahmad; Nielsen, Alex Toftgaard; Zengler, Karsten.

    In: Current Opinion in Biotechnology, Vol. 27, 2014, p. 79-87.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  20. 2013
  21. Published
  22. Published

    Experimental Approaches for Defining Functional Roles of Microbes in the Human Gut. / Dantas, Gautam; Sommer, Morten; Degnan, Patrick H. ; Goodman, Andrew L.

    In: Annual Review of Microbiology, Vol. 67, 2013, p. 459-475.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  23. Published

    Genome-wide identification of novel small RNAs in Pseudomonas aeruginosa. / Gómez Lozano, María; Molin, Søren (Main supervisor); Long, Katherine (Supervisor).

    Novo Nordisk Foundation Center for Biosustainability, 2013. 176 p.

    Publication: ResearchPh.D. thesis – Annual report year: 2013

  24. Published

    Improved production of membrane proteins in Escherichia coli by selective codon substitutions. / Nørholm, Morten H.H.; Toddo, Stephen; Virkki, Minttu T.I.; Light, Sara; von Heijne, Gunnar; Daley, Daniel O.

    In: FEBS Letters, Vol. 587, No. 15, 2013, p. 2352-2358.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  25. Published

    Microorganisms for the production of 5-hydroxytryptophan. / Knight, Eric Michael (Inventor); Zhu, Jiangfeng (Inventor); Förster, Jochen (Inventor); Luo, Hao (Inventor).

    IPC No.: C12N1/21; C12N15/53; C12N15/55. Patent No.: WO2013127914. Sep 06, 2013.

    Publication: ResearchPatent – Annual report year: 2013

  26. Published

    Microorganisms for the production of melatonin. / Knight, Eric Michael (Inventor); Zhu, Jiangfeng (Inventor); Förster, Jochen (Inventor); Luo, Hao (Inventor).

    IPC No.: C12N1/21; C12N15/53; C12N15/54. Patent No.: WO2013127915. Sep 06, 2013.

    Publication: ResearchPatent – Annual report year: 2013

  27. Published

    Nucleic Acid Aptamers as Novel Class of Therapeutics to Mitigate Alzheimer's Disease Pathology. / K. Tannenberg, Rudi; Al. Shamaileh, Hadi; Lauridsen, Lasse Holm; R. Kanwar, Jagat; R. Dodd, Peter; N. Veedu, Rakesh.

    In: Current Alzheimer Research, Vol. 10, No. 4, 2013, p. 442.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  28. Published

    Production of 3-O-xylosyl quercetin in Escherichia coli. / Pandey, Ramesh Prasad; Malla, Sailesh; Simkhada, Dinesh; Kim, Byung-Gee; Sohng, Jae Kyung.

    In: Applied Microbiology and Biotechnology, Vol. 97, No. 5, 2013, p. 1889-1901.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  29. Published

    Pseudomonas aeruginosa adaptation to lungs of cystic fibrosis patients leads to lowered resistance to phage and protist enemies.. / Friman, Ville-Petri; Ghoul, Melanie; Molin, Søren; Johansen, Helle Krogh; Buckling, Angus.

    In: PloS one., Vol. 8, No. 9, 2013, p. e75380.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  30. 2012
  31. Published

    A complex multilevel attack on Pseudomonas aeruginosa algT/U expression and AlgT/U activity results in the loss of alginate production. / Sautter, Robert; Ramos, Damaris; Schneper, Lisa; Ciofu, Oana; Wassermann, Tina; Koh, Chong-Lek; Heydorn, Arne; Hentzer, Morton; Høiby, Niels; Kharazmi, Arsalan; Molin, Søren; DeVries, Caroline A.; Ohman, Dennis E.; Mathee, Kalai.

    In: Gene, Vol. 498, No. 2, 2012, p. 242-253.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  32. Published

    Adaptation of Pseudomonas aeruginosa to the cystic fibrosis airway: an evolutionary perspective.. / Folkesson, Anders; Jelsbak, Lars; Yang, Lei; Johansen, Helle Krogh; Ciofu, Oana; Høiby, Niels; Molin, Søren.

    In: Nature Reviews. Microbiology, Vol. 10, No. 12, 2012.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  33. Published

    Amplification and Re-Generation of LNA-Modified Libraries. / Doessing, Holger; Hansen, Lykke H.; Veedu, Rakesh N.; Wengel, Jesper; Vester, Birte.

    In: Molecules, Vol. 17, No. 11, 2012, p. 13087.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  34. Published

    Anti-virulence approaches and novel peptidomimetics for combating resistant and biofilm associated bacteria. / Liu, Yang; Folkesson, Anders (Supervisor); Molin, Søren (Main supervisor).

    Kgs. Lyngby : Technical University of Denmark, 2012. 116 p.

    Publication: ResearchPh.D. thesis – Annual report year: 2012

  35. Published

    Application of split-green fluorescent protein for topology mapping membrane proteins in Escherichia coli. / Toddo, Stephen; Soderstrom, Bill; Palombo, Isolde; von Heijne, Gunnar; Nørholm, Morten; Daley, Daniel O.

    In: Protein Science, Vol. 21, No. 10, 2012, p. 1571-1576.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  36. Published

    Combating biofilms. / Yang, Liang; Liu, Yang; Wu, Hong; Song, Zhijun; Hoiby, Niels; Molin, Søren; Givskov, Michael.

    In: F E M S Immunology and Medical Microbiology, Vol. 65, No. 2, Sp. Iss. SI, 2012, p. 146-157.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  37. Published

    Context matters — the complex interplay between resistome genotypes and resistance phenotypes. / Dantas, Gautam; Sommer, Morten.

    In: Current Opinion in Microbiology, Vol. 15, No. 5, 2012, p. 577-582.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  38. Published

    Deletion and acquisition of genomic content during early stage adaptation of Pseudomonas aeruginosa to a human host environment. / Rau, Martin H.; Marvig, Rasmus Lykke; Ehrlich, Garth D.; Molin, Søren; Jelsbak, Lars.

    In: Environmental Microbiology, Vol. 14, No. 8, 2012, p. 2200-2211.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  39. Published

    Early genetic adaptation associated with chronic pseudomonas aeruginosa airways infection. / Johansen, H. K.; Aanaes, K.; Pressler, Tacjana; Skov, M.; Nielsen, K. G.; Ciofu, Oana; Buchwald, C.; Hoiby, N.; Molin, Søren.

    In: Pediatric Pulmonology, Vol. 47, No. S35, 2012, p. 328-329.

    Publication: Research - peer-reviewConference abstract in journal – Annual report year: 2012

  40. Published

    Enzymatic Recognition of 2′‐Modified Ribonucleoside 5′‐Triphosphates: Towards the Evolution of Versatile Aptamers. / Lauridsen, Lasse Holm; Rothnagel, Joseph A.; Veedu, Rakesh N.

    In: ChemBioChem, Vol. 13, No. 1, 2012, p. 19-25.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  41. Published

    Evolutionary dynamics of pseudomonas aeruginosa in CF. / Molin, Soren; Jelsbak, Lars; Johansen, Helle; Hoiby, Niels.

    In: Pediatric Pulmonology, Vol. 47, 2012, p. 152-153.

    Publication: Research - peer-reviewConference abstract in journal – Annual report year: 2012

  42. Published

    Genome‐wide identification of novel small RNAs in Pseudomonas aeruginosa. / Gómez Lozano, María; Marvig, Rasmus Lykke; Molin, Søren; Long, Katherine.

    In: Environmental Microbiology, Vol. 14, No. 8, 2012, p. 2006-2016.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  43. Published

    Initial Pseudomonas aeruginosa infection in patients with cystic fibrosis: characteristics of eradicated and persistent isolates. / Tramper-Stranders, G. A.; van der Ent, C. K.; Molin, Søren; Yang, Liang; Hansen, Susse Kirkelund; Rau, Martin Holm; Ciofu, Oana; Johansen, H. K.; Wolfs, T. F. W.

    In: Clinical Microbiology and Infection, Vol. 18, No. 6, 2012, p. 567-574.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  44. Published
  45. Published

    Metabolic engineering of Saccharomyces cerevisiae for optimizing 3HP production. / Jensen, Niels Bjerg; Maury, Jerome; Oberg, Fredrik; Kildegaard, Kanchana Rueksomtawin; Forster, Jochen; Nielsen, Jens; Borodina, Irina.

    In: New Biotechnology, Vol. 29s, 2012, p. s61.

    Publication: Research - peer-reviewConference abstract in journal – Annual report year: 2013

  46. Published

    Mutations in 23S rRNA Confer Resistance against Azithromycin in Pseudomonas aeruginosa. / Marvig, Rasmus Lykke; Søndergaard, Mette S. R.; Pedersen, Søren Damkiær; Høiby, Niels; Johansen, Helle Krogh; Molin, Søren; Jelsbak, Lars.

    In: Antimicrobial Agents and Chemotherapy, Vol. 56, No. 8, 2012, p. 4519-4521.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  47. Published
  48. Published

    Nucleic Acid Aptamers Against Biotoxins: A New Paradigm Toward the Treatment and Diagnostic Approach. / Lauridsen, Lasse Holm; Veedu, Rakesh N.

    In: Nucleic Acid Therapeutics, Vol. 22, No. 6, 2012.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  49. Published

    Peptide‐MHC class I stability is a better predictor than peptide affinity of CTL immunogenicity. / Harndahl, Mikkel Nors; Rasmussen, Michael; Roder, Gustav; Dalgaard Pedersen, Ida; Sørensen, Mikael; Nielsen, Morten; Buus, Søren.

    In: European Journal of Immunology, Vol. 42, No. 6, 2012, p. 1405-1416.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  50. Published

    Polysaccharides serve as scaffold of biofilms formed by mucoid Pseudomonas aeruginosa.. / Yang, Liang; Hengzhuang, Wang; Wu, Hong; Pedersen, Søren Damkiær; Jochumsen, Nicholas; Song, Zhijun; Givskov, Michael Christian; Høiby, Niels; Molin, Søren.

    In: F E M S Immunology and Medical Microbiology, Vol. 65, No. 2, 2012, p. 366-376.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  51. Published

    Pseudomonas aeruginosa host-adaptation in cystic fibrosis patients. / Rau, Martin Holm; Molin, Søren (Main supervisor).

    Kgs. Lyngby : Technical University of Denmark, 2012. 120 p.

    Publication: ResearchPh.D. thesis – Annual report year: 2013

  52. Published

    Rapid One-Step Selection Method for Generating Nucleic Acid Aptamers: Development of a DNA Aptamer against alpha-Bungarotoxin. / Lauridsen, Lasse Holm; Shamaileh, Hadi A.; Edwards, Stacey L.; Taran, Elena; Veedu, Rakesh N.

    In: P L o S One, Vol. 7, No. 7, 2012, p. e41702.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  53. Published

    Resistance to Linezolid Caused by Modifications at Its Binding Site on the Ribosome. / Long, Katherine S.; Vester, Birte.

    In: Antimicrobial Agents and Chemotherapy, Vol. 56, No. 2, 2012, p. 603-612.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  54. Published

    SarA is a negative regulator of Staphylococcus epidermidis biofilm formation. / Martin, Christer; Heinze, C.; Busch, M.; Franke, G.; Hentschke, M.; Dühring, Sara Bayard; Buettner, H.; Kotasinska, M.; Wischnewski, V.; Buck, F.; Molin, Søren; Otto, Michael; Rohde, Henning.

    In: International Journal of Medical Microbiology, Vol. 302, 2012.

    Publication: Research - peer-reviewConference abstract in journal – Annual report year: 2012

  55. Published

    Staphylococcus epidermidis recovered from indwelling catheters exhibit enhanced biofilm dispersal and "self-renewal" through downregulation of agr. / Dai, Lu; Yang, Liang; Parsons, Chris; Findlay, Victoria J.; Molin, Søren; Qin, Zhiqiang.

    In: B M C Microbiology, Vol. 12, 2012, p. Article No.: 102.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  56. Published

    The Order Bacillales Hosts Functional Homologs of the Worrisome cfr Antibiotic Resistance Gene. / Hansen, Lykke H.; Planellas, Mercè H.; Long, Katherine S.; Vester, Birte.

    In: Antimicrobial Agents and Chemotherapy, Vol. 56, No. 7, 2012, p. 3563-3567.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  57. Published
  58. Published

    The Shared Antibiotic Resistome of Soil Bacteria and Human Pathogens. / Forsberg, Kevin J.; Reyes, Alejandro; Wang, Bin; Selleck, Elizabeth M.; Sommer, Morten O. A.; Dantas, Gautam.

    In: Science, Vol. 337, No. 6098, 2012, p. 1107-1111.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  59. 2011
  60. Published

    Antibiotics and the resistant microbiome. / Sommer, Morten; Dantas, Gautam.

    In: Current Opinion in Microbiology, Vol. 14, No. 5, 2011, p. 556-563.

    Publication: Research - peer-reviewJournal article – Annual report year: 2011

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