1. 2016
  2. Published

    CRMAGE: CRISPR Optimized MAGE Recombineering. / Ronda, Carlotta; Pedersen, Lasse Ebdrup; Sommer, Morten Otto Alexander; Nielsen, Alex Toftgaard.

    In: Scientific Reports, Vol. 6, 19452, 2016.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  3. 2015
  4. Published

    Novel Methods for Development of Cell Factories and Laboratory Simultations. / Bonde, Mads; Sommer, Morten Otto Alexander (Supervisor).

    Novo Nordisk Foundation Center for Biosustainability, 2015. 315 p.

    Publication: ResearchPh.D. thesis – Annual report year: 2015

  5. Published

    Towards evolution-guided microbial engineering - tools development and applications. / Genee, Hans Jasper; Sommer, Morten Otto Alexander (Supervisor).

    Novo Nordisk Foundation Center for Biosustainability, 2015. 274 p.

    Publication: ResearchPh.D. thesis – Annual report year: 2015

  6. Published
  7. Published

    Advancing gut microbiome research using cultivation. / Sommer, Morten OA.

    In: Current Opinion in Microbiology, Vol. 27, 2015, p. 127-132.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  8. Published
  9. Published
  10. Published

    Bacteriocin-mediated competition in cystic fibrosis lung infections. / Ghoul, Melanie; West, Stuart A.; Johansen, Helle Krogh; Molin, Søren; Harrison, Odile B.; Maiden, Martin C. J.; Jelsbak, Lars; Bruce, John B.; Griffin, Ashleigh S.

    In: Royal Society of London. Proceedings B. Biological Sciences, Vol. 282, No. 1814, 20150972, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  11. Published

    Bistability in a Metabolic Network Underpins the De Novo Evolution of Colony Switching in Pseudomonas fluorescens. / Gallie, Jenna; Libby, Eric; Bertels, Frederic; Remigi, Philippe; Jendresen, Christian Bille; Ferguson, Gayle C.; Desprat, Nicolas; Buffing, Marieke F.; Sauer, Uwe; Beaumont, Hubertus J. E.; Martinussen, Jan; Kilstrup, Mogens; Rainey, Paul B.

    In: P L o S Biology, Vol. 13, No. 3, e1002109, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  12. Published
  13. Accepted/In press

    Codon optimizing for increased membrane protein production : a minimalist approach. / Mirzadeh, K.; Toddo, S.; Nørholm, Morten.

    In: Methods in Molecular Biology, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  14. Published
  15. Published
  16. Published
  17. Published

    CTX-M-1 β-lactamase expression in Escherichia coli is dependent on cefotaxime concentration, growth phase and gene location.. / Kjeldsen, Thea S. B.; Overgaard, Martin; Nielsen, Søren S.; Bortolaia, Valeria; Jelsbak, Lotte; Sommer, Morten Otto Alexander; Guardabassi, Luca; Olsen, John E.

    In: Journal of Antimicrobial Chemotherapy, Vol. 70, No. 1, 2015, p. 62-70.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  18. Published
  19. Published

    Development of Spatial Distribution Patterns by Biofilm Cells. / Haagensen, Janus Anders Juul; Hansen, Susse Kirkelund; Bak Christensen, Bjarke; Pamp, Sünje Johanna; Molin, Søren.

    In: Applied and Environmental Microbiology, Vol. 81, No. 18, 2015, p. 6120-6128.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  20. Published

    Differential expression of small RNAs under chemical stress and fed-batch fermentation in E. coli. / Rau, Martin Holm; Nielsen, Alex Toftgaard; Long, Katherine.

    In: B M C Genomics, Vol. 16, No. 1051, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  21. Published

    Direct Mutagenesis of Thousands of Genomic Targets using Microarray-derived Oligonucleotides. / Bonde, Mads; Kosuri, Sriram; Genee, Hans Jasper; Sarup-Lytzen, Kira; Church, George M.; Sommer, Morten; Wang, Harris H.

    In: A C S Synthetic Biology, Vol. 4, No. 1, 2015, p. 17-22.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  22. Published

    Diversity of metabolic profiles of cystic fibrosis Pseudomonas aeruginosa during the early stages of lung infection. / Jørgensen, Karin Meinike; Wassermann, Tina; Johansen, Helle Krogh; Christiansen, Lasse Engbo; Molin, Søren; Høiby, Niels; Ciofu, Oana.

    In: Microbiology, Vol. 161, No. 7, 2015, p. 1447-1462.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  23. Published

    Diversity of small RNAs expressed in Pseudomonas species. / Gomez-Lozano, Mara; Marvig, Rasmus Lykke; Molina-Santiago, Carlos; Tribelli, Paula Maria; Ramos, Juan-Luis; Molin, Søren.

    In: Environmental Microbiology Reports, Vol. 7, No. 2, 2015, p. 227-236.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  24. Published

    Editorial overview: Chemical biotechnology: Interdisciplinary concepts for modern biotechnological production of biochemicals and biofuels. / Bornscheuer, Uwe T; Nielsen, Alex Toftgaard.

    In: Current Opinion in Biotechnology, Vol. 35, 2015, p. 133-134.

    Publication: Research - peer-reviewEditorial – Annual report year: 2015

  25. Published

    Electrochemical detection of pyocyanin as a biomarker for bacterial infections. / Al Atraktchi, Fatima Al-Zahraa; Svendsen, Winnie Edith; Breum Andersen, Sandra; Molin, Søren; Johansen, Helle Krogh.

    2015. Poster session presented at 25th European Congress of Clinical Microbiology and Infectious Diseases, Copenhagen, Denmark.

    Publication: Research - peer-reviewPoster – Annual report year: 2015

  26. E-pub ahead of print
  27. Published

    Enhanced Protein Production in Escherichia coli by Optimization of Cloning Scars at the Vector-Coding Sequence Junction. / Mirzadeh, Kiavash; Martinez, Virginia; Toddo, Stephen; Guntur, Suchithra; Herrgard, Markus; Elofsson, Arne; Nørholm, Morten; Daley, Daniel O.

    In: A C S Synthetic Biology, Vol. 4, No. 9, 2015, p. 959-965.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  28. Published

    Evolutionary insight from whole-genome sequencing of Pseudomonas aeruginosa from cystic fibrosis patients. / Marvig, Rasmus Lykke; Madsen Sommer, Lea Mette; Jelsbak, Lars; Molin, Søren; Johansen, Helle Krogh.

    In: Future Microbiology, Vol. 10, No. 4, 2015, p. 599-611.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  29. Published

    Extended spectrum beta-lactamase-producing Escherichia coli forms filaments as an initial response to cefotaxime treatment. / Kjeldsen, Thea S. B.; Sommer, Morten Otto Alexander; Olsen, John E.

    In: B M C Microbiology, Vol. 15, No. 63, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  30. Published

    Flexible metabolic pathway construction using modular and divisible selection gene regulators. / Rugbjerg, Peter; Myling-Petersen, Nils; Sommer, Morten Otto Alexander.

    In: Metabolic Engineering, Vol. 31, 2015, p. 189-197.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  31. Published
  32. Published

    Limited dissemination of the wastewater treatment plant core resistome. / Munck, Christian; Albertsen, Mads; Telke, Amar; Ellabaan, Mostafa M Hashim; Nielsen, Per Halkjær; Sommer, Morten Otto Alexander.

    In: Nature Communications, Vol. 6, 8452, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  33. Published

    Novel extracellular medium-chain-length polyhydroxyalkanoate depolymerase from Streptomyces exfoliatus K10 DSMZ 41693 : a promising biocatalyst for the efficient degradation of natural and functionalized mcl-PHAs. / Martinez, Virginia; de Santos, Patricia Gómez; García-Hidalgo, Javier; Hormigo, Daniel; Prieto, M. Auxiliadora; Arroyo, Miguel; de la Mata, Isabel.

    In: Applied Microbiology and Biotechnology, Vol. 99, No. 22, 2015, p. 9605-9615.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  34. Published

    Pre-adapting parasitic phages to a pathogen leads to increased pathogen clearance and lowered resistance evolution with Pseudomonas aeruginosacystic fibrosis bacterial isolates. / Friman, Ville-Petri; Soanes-Brown, Daniel; Sierocinski, Pawel; Molin, Søren; Johansen, Helle Krogh; Merabishvili, Maya; Pirnay, Jean-Paul; De Vos, Daniel; Buckling, Angus.

    In: Journal of Evolutionary Biology, Vol. 29, No. 1, 2015, p. 188-198.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  35. Published

    Recent applications of synthetic biology tools for yeast metabolic engineering. / Jensen, Michael Krogh; Keasling, Jay.

    In: FEMS Yeast Research, Vol. 15, No. 1, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  36. Published
  37. Published
  38. Published

    Simultaneous sinus and lung infections in patients with primary ciliary dyskinesia. / Alanin, Mikkel Christian; Johansen, Helle Krogh; Aanaes, Kasper; Høiby, Niels; Pressler, Tanja; Skov, Marianne; Nielsen, Kim Gjerum; Von Buchwald, Christian.

    In: Acta Oto-Laryngologica, Vol. 135, No. 1, 2015, p. 58-63.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  39. Published
  40. Published

    The effect of short-term, high-dose oral N-acetylcysteine treatment on oxidative stress markers in cystic fibrosis patients with chronic P-aeruginosa infection - A pilot study. / Skov, Marianne; Pressler, Tacjana; Lykkesfeldt, Jens; Poulsen, Henrik Enghusen; Jensen, Peter Ostrup; Johansen, Helle Krogh; Qvist, Tavs; Kraemer, Dorthe; Hoiby, Niels; Ciofu, Oana.

    In: Journal of Cystic Fibrosis, Vol. 14, No. 2, 2015, p. 211-218.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  41. Published

    The molecular dimension of microbial species: 1. Ecological distinctions among, and homogeneity within, putative ecotypes of Synechococcus inhabiting the cyanobacterial mat of Mushroom Spring, Yellowstone National Park. / Becraft, Eric D.; Wood, Jason M.; Rusch, Douglas B.; Kühl, Michael; Ingemann Jensen, Sheila; Bryant, Donald A.; Roberts, David W.; Cohan, Frederick M.; Ward, David M.

    In: Frontiers in Microbiology, Vol. 6, 590, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  42. Published
  43. E-pub ahead of print
  44. Published

    What Makes Pseudomonas Aeruginosa Persist in the Lungs of CF Patients?. / Johansen, H.; Madsen Sommer, Lea Mette; Marvig, Rasmus Lykke; Jensen, L.; Skov, M.; Pressler, T.; Molin, Søren.

    In: Pediatric Pulmonology, Vol. 50, 309, 2015, p. 308.

    Publication: Research - peer-reviewConference abstract in journal – Annual report year: 2015

  45. 2014
  46. Published
  47. Published

    Antibiofilm Properties of Acetic Acid. / Bjarnsholt, Thomas; Alhede, Morten; Jensen, Peter Østrup; Nielsen, Anne K.; Johansen, Helle Krogh; Homøe, Preben; Høiby, Niels; Givskov, Michael Christian; Kirketerp-Møller, Klaus.

    In: Advances in Wound Care, Vol. 4, No. 7, 2014, p. 363-372.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  48. Published

    A sustainable route to produce the scytonemin precursor using Escherichia coli. / Malla, Sailesh; Sommer, Morten O. A.

    In: Green Chemistry, Vol. 16, No. 6, 2014, p. 3255-3265.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  49. Published

    Biosynthesis of Phenylnannolone A, a Multidrug Resistance Reversal Agent from the Halotolerant Myxobacterium Nannocystis pusilla B150. / Bouhired, Sarah M.; Crüsemann, Max; Almeida, Celso; Weber, Tilmann; Piel, Jörn; Schäberle, Till F.; König, Gabriele M.

    In: ChemBioChem, Vol. 15, No. 5, 2014, p. 757-765.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  50. Published

    Coexistence and Within-Host Evolution of Diversified Lineages of Hypermutable Pseudomonas aeruginosa in Long-term Cystic Fibrosis Infections. / Feliziani, Sofia; Marvig, Rasmus Lykke; Lujan, Adela M.; Moyano, Alejandro J.; Di Rienzo, Julio A.; Johansen, Helle Krogh; Molin, Søren; Smania, Andrea M.

    In: P L o S Genetics, Vol. 10, No. 10, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  51. Published

    Combinatorial Strategies for Improving Multiple-Stress Resistance in Industrially Relevant Escherichia coli Strains.. / Lennen, Rebecca; Herrgard, Markus.

    In: Applied and Environmental Microbiology, Vol. 80, No. 19, 2014, p. 6223-6242.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  52. Published

    Comparing Whole-Genome Sequencing with Sanger Sequencing for spa Typing of Methicillin-Resistant Staphylococcus aureus. / Bartels, Mette Damkjaer; Petersen, Andreas; Worning, Peder; Nielsen, Jesper Boye; Larner-Svensson, Hanna; Johansen, Helle Krogh; Andersen, Leif Percival; Jarlov, Jens Otto; Boye, Kit; Larsen, Anders Rhod; Westh, Henrik.

    In: European Journal of Clinical Microbiology & Infectious Diseases, Vol. 52, No. 12, 2014, p. 4305-4308.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  53. Published
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