1. 2015
  2. Published

    Bistability in a Metabolic Network Underpins the De Novo Evolution of Colony Switching in Pseudomonas fluorescens. / Gallie, Jenna; Libby, Eric; Bertels, Frederic; Remigi, Philippe; Jendresen, Christian Bille; Ferguson, Gayle C.; Desprat, Nicolas; Buffing, Marieke F.; Sauer, Uwe; Beaumont, Hubertus J. E.; Martinussen, Jan; Kilstrup, Mogens; Rainey, Paul B.

    In: P L o S Biology, Vol. 13, No. 3, e1002109, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  3. E-pub ahead of print
  4. Published
  5. Published
  6. Published

    CTX-M-1 β-lactamase expression in Escherichia coli is dependent on cefotaxime concentration, growth phase and gene location.. / Kjeldsen, Thea S. B.; Overgaard, Martin; Nielsen, Søren S.; Bortolaia, Valeria; Jelsbak, Lotte; Sommer, Morten Otto Alexander; Guardabassi, Luca; Olsen, John E.

    In: Journal of Antimicrobial Chemotherapy, Vol. 70, No. 1, 2015, p. 62-70.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  7. Published

    Diversity of small RNAs expressed in Pseudomonas species. / Gomez-Lozano, Mara; Marvig, Rasmus Lykke; Molina-Santiago, Carlos; Tribelli, Paula Maria; Ramos, Juan-Luis; Molin, Søren.

    In: Environmental Microbiology Reports, Vol. 7, No. 2, 2015, p. 227-236.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  8. Published

    Electrochemical detection of pyocyanin as a biomarker for bacterial infections. / Al Atraktchi, Fatima Al-Zahraa; Svendsen, Winnie Edith; Breum Andersen, Sandra; Molin, Søren; Johansen, Helle Krogh.

    2015. Poster session presented at 25th European Society of Clinical Microbiology and Infectious Diseases, Copenhagen, Denmark.

    Publication: ResearchPoster – Annual report year: 2015

  9. Published

    Evolutionary insight from whole-genome sequencing of Pseudomonas aeruginosa from cystic fibrosis patients. / Marvig, Rasmus Lykke; Madsen Sommer, Lea Mette; Jelsbak, Lars; Molin, Søren; Johansen, Helle Krogh.

    In: Future Microbiology, Vol. 10, No. 4, 2015, p. 599-611.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  10. Published

    Extended spectrum beta-lactamase-producing Escherichia coli forms filaments as an initial response to cefotaxime treatment. / Kjeldsen, Thea S. B.; Sommer, Morten Otto Alexander; Olsen, John E.

    In: B M C Microbiology, Vol. 15, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  11. Published
  12. E-pub ahead of print
  13. Published

    Simultaneous sinus and lung infections in patients with primary ciliary dyskinesia. / Alanin, Mikkel Christian; Johansen, Helle Krogh; Aanaes, Kasper; Høiby, Niels; Pressler, Tanja; Skov, Marianne; Nielsen, Kim Gjerum; Von Buchwald, Christian.

    In: Acta Oto-Laryngologica, Vol. 135, No. 1, 2015, p. 58-63.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  14. Published

    The effect of short-term, high-dose oral N-acetylcysteine treatment on oxidative stress markers in cystic fibrosis patients with chronic P-aeruginosa infection - A pilot study. / Skov, Marianne; Pressler, Tacjana; Lykkesfeldt, Jens; Poulsen, Henrik Enghusen; Jensen, Peter Ostrup; Johansen, Helle Krogh; Qvist, Tavs; Kraemer, Dorthe; Hoiby, Niels; Ciofu, Oana.

    In: Journal of Cystic Fibrosis, Vol. 14, No. 2, 2015, p. 211-218.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  15. 2014
  16. Published
  17. Published

    Antibiofilm Properties of Acetic Acid. / Bjarnsholt, Thomas; Alhede, Morten; Jensen, Peter Østrup; Nielsen, Anne K.; Johansen, Helle Krogh; Homøe, Preben; Høiby, Niels; Givskov, Michael Christian; Kirketerp-Møller, Klaus.

    In: Advances in Wound Care, Vol. 4, No. 7, 2014, p. 363-372.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  18. Published
  19. Published

    A sustainable route to produce the scytonemin precursor using Escherichia coli. / Malla, Sailesh; Sommer, Morten O. A.

    In: Green Chemistry, Vol. 16, No. 6, 2014, p. 3255-3265.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  20. Published

    Biosynthesis of Phenylnannolone A, a Multidrug Resistance Reversal Agent from the Halotolerant Myxobacterium Nannocystis pusilla B150. / Bouhired, Sarah M.; Crüsemann, Max; Almeida, Celso; Weber, Tilmann; Piel, Jörn; Schäberle, Till F.; König, Gabriele M.

    In: ChemBioChem, Vol. 15, No. 5, 2014, p. 757-765.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  21. Published

    Coexistence and Within-Host Evolution of Diversified Lineages of Hypermutable Pseudomonas aeruginosa in Long-term Cystic Fibrosis Infections. / Feliziani, Sofia; Marvig, Rasmus Lykke; Lujan, Adela M.; Moyano, Alejandro J.; Di Rienzo, Julio A.; Johansen, Helle Krogh; Molin, Søren; Smania, Andrea M.

    In: P L o S Genetics, Vol. 10, No. 10, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  22. Published

    Combinatorial Strategies for Improving Multiple-Stress Resistance in Industrially Relevant Escherichia coli Strains.. / Lennen, Rebecca; Herrgard, Markus.

    In: Applied and Environmental Microbiology, Vol. 80, No. 19, 2014, p. 6223-6242.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  23. Published

    Comparing Whole-Genome Sequencing with Sanger Sequencing for spa Typing of Methicillin-Resistant Staphylococcus aureus. / Bartels, Mette Damkjaer; Petersen, Andreas; Worning, Peder; Nielsen, Jesper Boye; Larner-Svensson, Hanna; Johansen, Helle Krogh; Andersen, Leif Percival; Jarlov, Jens Otto; Boye, Kit; Larsen, Anders Rhod; Westh, Henrik.

    In: European Journal of Clinical Microbiology & Infectious Diseases, Vol. 52, No. 12, 2014, p. 4305-4308.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  24. Published
  25. Published

    Design and application of transcription factor based metabolite sensors in Escherichia coli. / Siedler, Solvej; Stahlhut, Steen Gustav; Bringer, Stephanie; Bott, Michael; Maury, Jerome; Sommer, Morten Otto Alexander.

    Abstract Book - DTU Sustain Conference 2014. Kgs. Lyngby : Technical University of Denmark, 2014.

    Publication: Research - peer-reviewConference abstract in proceedings – Annual report year: 2014

  26. Published

    Determining the Control Circuitry of Redox Metabolism at the Genome-Scale. / Federowicz, Stephen; Kim, Donghyuk; Ebrahim, Ali; Lerman, Joshua; Nagarajan, Harish; Cho, Byung-kwan; Zengler, Karsten; Palsson, Bernhard.

    In: P L o S Genetics, Vol. 10, No. 4, e1004264, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  27. Published

    Direct Mutagenesis of Thousands of Genomic Targets using Microarray-derived Oligonucleotides. / Bonde, Mads; Kosuri, Sriram; Genee, Hans Jasper; Sarup-Lytzen, Kira; Church, George M.; Sommer, Morten; Wang, Harris H.

    In: A C S Synthetic Biology, Vol. 4, No. 1, 2014, p. 17-22.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  28. Published

    Draft Genome Sequence of Photobacterium halotolerans S2753, Producer of Bioactive Secondary Metabolites. / Machado, Henrique; Månsson, Maria; Gram, Lone.

    In: Genome Announcements, Vol. 2, No. 3, e00535-14, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  29. Published
  30. Published

    Evolution of Escherichia coli to 42 °C and Subsequent Genetic Engineering Reveals Adaptive Mechanisms and Novel Mutations.. / Sandberg, Troy E.; Pedersen, Margit; LaCroix, Ryan A.; Ebrahim, Ali; Bonde, Mads; Herrgard, Markus; Palsson, Bernhard; Sommer, Morten; Feist, Adam.

    In: Molecular Biology and Evolution, Vol. 31, No. 10, 2014, p. 2647-2662.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  31. Published
  32. Published
  33. Published

    ‘Forcing the issue’ - Aromatic tuning facilitates stimulus-independent modulation of a two-component signaling circuit. / Nørholm, Morten; von Heijne, Gunnar; Draheim, Roger R.

    In: A C S Synthetic Biology, Vol. 4, No. 4, 2014, p. 474-481.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  34. Published
  35. Published

    How to Fight Back Against Antibiotic Resistance. / Dantas, Gautam; Sommer, Morten.

    In: American Scientist, Vol. 102, No. 1, 2014, p. 42-51.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  36. Published

    Human Intestinal Cells Modulate Conjugational Transfer of Multidrug Resistance Plasmids between Clinical Escherichia coli Isolates.. / Machado, Ana Manuel; Sommer, Morten.

    In: P L o S One, Vol. 9, No. 6, 2014, p. e100739.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  37. Published

    Identification of Bacterial Small RNAs by RNA Sequencing. / Gómez Lozano, María; Marvig, Rasmus Lykke; Molin, Søren; Long, Katherine.

    Pseudomonas Methods and Protocols. ed. / Alain Filloux; Juan-Luis Ramos. Springer Science+Business Media B.V., 2014. p. 433-456 (Methods in Molecular Biology, Vol. 1149).

    Publication: Research - peer-reviewBook chapter – Annual report year: 2014

  38. Published

    Identification of genes specifically required for the anaerobic metabolism of benzene in Geobacter metallireducens. / Zhang, Tian; Tremblay, Pier-Luc; Chaurasia, Akhilesh Kumar; Smith, Jessica A.; Bain, Timothy S.

    In: Frontiers in Microbiology, Vol. 5, 245, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  39. Published

    Improving biotech education through gamified laboratory simulations. / Bonde, Mads; Makransky, Guido; Wandall, Jakob; Larsen, Mette Voldby; Morsing, Mikkel; Jarmer, Hanne Østergaard; Sommer, Morten.

    In: Nature Biotechnology, Vol. 32, No. 7, 2014, p. 694-697.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  40. Published

    Increasing prevalence of group B streptococcal infection among pregnant women. / Petersen, Kathrine Birch; Johansen, Helle Krogh; Rosthoj, Susanne; Krebs, Lone; Pinborg, Anja; Hedegaard, Morten.

    In: Danish Medical Bulletin (Online), Vol. 61, No. 9, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  41. Published

    Library sequencing strategies for comparative analysis of stress resistance mechanisms in Escherichia coli strains. / Lennen, Rebecca; Bonde, Ida; Koza, Anna; Herrgard, Markus.

    In: New Biotechnology, Vol. 31, 2014, p. S86.

    Publication: Research - peer-reviewConference abstract in journal – Annual report year: 2014

  42. Published

    Loss of Social Behaviours in Populations of Pseudomonas aeruginosa Infecting Lungs of Patients with Cystic Fibrosis. / Jiricny, Natalie; Molin, Søren; Foster, Kevin; Diggle, Stephen P.; Scanlan, Pauline D.; Ghoul, Melanie; Johansen, Helle Krogh; Santorelli, Lorenzo A.; Popat, Roman; West, Stuart A.; Griffin, Ashleigh S.

    In: P L o S One, Vol. 9, No. 1, 2014, p. Article No.: e83124.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  43. Published

    Microbial Synthesis of the Forskolin Precursor Manoyl Oxide in an Enantiomerically Pure Form. / Nielsen, Morten Thrane; Ranberg, Johan Andersen; Christensen, Ulla; Christensen, Hanne Bjerre; Harrison, Scott James; Olsen, Carl Erik; Hamberger, Björn; Møller, Birger Lindberg; Nørholm, Morten.

    In: Applied and Environmental Microbiology, Vol. 80, No. 23, 2014, p. 7258–7265.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  44. Published

    Microbiology: Barriers to the spread of resistance. / Sommer, Morten.

    In: Nature, Vol. 509, 2014, p. 567–568.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  45. Published

    MODEST: a web-based design tool for oligonucleotide-mediated genome engineering and recombineering. / Bonde, Mads; Klausen, Michael S.; Anderson, Mads Valdemar; Nilsson Wallin, Annika; Wang, Harris H.; Sommer, Morten.

    In: Nucleic Acids Research, Vol. 12, No. W1, 2014, p. W408-W415.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  46. Published
  47. Published

    P-Link: A method for generating multicomponent cytochrome P450 fusions with variable linker length. / Belsare, Ketaki D.; Ruff, Anna Joelle; Martinez, Ronny; Shivange, Amol V.; Mundhada, Hemanshu; Holtmann, Dirk; Schrader, Jens; Schwaneberg, Ulrich.

    In: BioTechniques, Vol. 57, No. 1, 2014, p. 13-20.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  48. Published

    Prediction of resistance development against drug combinations by collateral responses to component drugs.. / Munck, Christian; Gumpert, Heidi; Nilsson Wallin, Annika; Wang, Harris H.; Sommer, Morten.

    In: Science Translational Medicine, Vol. 6, No. 262, 262ra156 , 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  49. Published

    Recent applications of synthetic biology tools for yeast metabolic engineering. / Jensen, Michael Krogh; Keasling, Jay.

    In: FEMS Yeast Research, Vol. 15, No. 1, 2014, p. 1-10.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  50. Published

    Secreted single‐stranded DNA is involved in the initial phase of biofilm formation by Neisseria gonorrhoeae. / Zweig, Maria; Schork, Sabine; Koerdt, Andrea; Siewering, Katja; Sternberg, Claus; Thormann, Kai; Albers, Sonja‐Verena; Molin, Søren; Does, Chris, van der.

    In: Environmental Microbiology, Vol. 16, No. 4, 2014, p. 1040-1052.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  51. Published
  52. Published

    Synthetic Biology Tools for the Membrane – Targeted Localisation and Elucidation of Protein Interactions. / Wendel, Sofie; Seppala, Susanna; Nørholm, Morten.

    Abstract Book - DTU Sustain Conference 2014. Kgs. Lyngby : Technical University of Denmark, 2014.

    Publication: Research - peer-reviewConference abstract in proceedings – Annual report year: 2014

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