Center for Systems Microbiology

  1. 2014
  2. Published

    Evaluation of whole genome sequencing for outbreak detection of Salmonella enterica. / Leekitcharoenphon, Pimlapas; Nielsen, Eva M.; Kaas, Rolf Sommer; Lund, Ole; Aarestrup, Frank Møller.

    In: P L o S One, Vol. 9, No. 2, e87991, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  3. Published
  4. 2013
  5. Published

    ClpP deletion causes attenuation of Salmonella Typhimurium virulence through mis-regulation of RpoS and indirect control of CsrA and the SPI genes. / Knudsen, Gitte Maegaard; Olsen, John E.; Aabo, Søren; Barrow, Paul; Rychlik, Ivan; Thomsen, Line E.

    In: Microbiology, Vol. 159, No. Part 7, 2013, p. 1497-1509.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  6. Published

    Comparative Genomic Analysis of Rapid Evolution of an Extreme-Drug-Resistant Acinetobacter baumannii Clone. / Tan, Sean Yang-Yi; Chua, Song Lin; Liu, Yang; Høiby, Niels; Andersen, Leif Percival; Givskov, Michael Christian; Song, Zhijun; Yang, Liang.

    In: Genome Biology and Evolution, Vol. 5, No. 5, 2013, p. 807-818.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  7. Published

    Détection et quantification de Morganella psychrotolerans dans des poissons par qPCR.. / Podeur, G.; Leroi, F.; Prevost, H.; Pilet, M. F.; Dalgaard, Paw; Emborg, J.; Martinussen, Jan; Hansen, L.

    2013. Abstract from 9e Congrès Nationale de la Société Francaise de Microbiologie, Lille, France.

    Publication: Research - peer-reviewConference abstract for conference – Annual report year: 2013

  8. Published

    Discovering Unique, Low-Energy Transition States Using Evolutionary Molecular Memetic Computing. / Ellabaan, Mostafa M Hashim; Ong, Y.S.; Handoko, S.D.; Kwoh, C.K.; Man, H.Y.

    In: I E E E Computational Intelligence Magazine, Vol. 8, No. 3, 2013, p. 54-63.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  9. Published
  10. Published
  11. Published
  12. Published
  13. Published

    High beta-Lactamase Levels Change the Pharmacodynamics of beta-Lactam Antibiotics in Pseudomonas aeruginosa Biofilms. / Wang, Hengzhuang; Ciofu, Oana; Yang, Liang; Wu, Hong; Song, Zhijun; Oliver, Antonio; Hoiby, Niels.

    In: Antimicrobial Agents and Chemotherapy, Vol. 57, No. 1, 2013, p. 196-204.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  14. Published
  15. Published

    Identification of the Receptor-Binding Protein in Lytic Leuconostoc pseudomesenteroides Bacteriophages. / Kot, Witold Piotr; Hammer, Karin; Neve, Horst; Vogensen, Finn Kvist.

    In: Applied and Environmental Microbiology, Vol. 79, No. 10, 2013, p. 3311-3314.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  16. Published

    Industrial Systems Biology of Saccharomyces cerevisiae Enables Novel Succinic Acid Cell Factory.. / Otero, José Manuel; Cimini, Donatella; Patil, Kiran Raosaheb; Poulsen, Simon Guldberg; Olsson, Lisbeth; Nielsen, Jens.

    In: P L o S One, Vol. 8, No. 1, e54144, 2013.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  17. Published

    Investigation of the Relationship between Lactococcal Host Cell Wall Polysaccharide Genotype and 936 Phage Receptor Binding Protein Phylogeny. / Mahony, Jennifer; Kot, Witold Piotr; Murphy, James; Ainsworth, Stuart; Neve, Horst; Hansen, Lars H.; Heller, Knut J.; Sørensen, Søren; Hammer, Karin; Cambillau, Christian; Vogensen, Finn Kvist; van Sinderen, Douwe.

    In: Applied and Environmental Microbiology, Vol. 79, No. 14, 2013, p. 4385-4392.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  18. Published

    Protection of cod larvae from vibriosis by Phaeobacter spp.: A comparison of strains and introduction times. / D'Alvise, Paul; Lillebø, Siril; Wergeland, Heidrun I.; Gram, Lone; Bergh, Øivind.

    In: Aquaculture, Vol. 384-387, 2013, p. 82-86.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  19. Published
  20. Published

    Rewiring Lactococcus lactis for Ethanol Production. / Solem, Christian; Dehli, Tore Ibsen; Jensen, Peter Ruhdal.

    In: Applied and Environmental Microbiology, Vol. 79, No. 8, 2013, p. 2512-2518.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  21. Published
  22. Published

    The putative thiosulfate sulfurtransferases PspE and GlpE contribute to virulence of Salmonella Typhimurium in the mouse model of systemic disease.. / Wallrodt, Inke; Jelsbak, Lotte; Thorndahl, Lotte; Thomsen, Line Elnif; Lemire, Sebastien; Olsen, John E.

    In: PLoS ONE, Vol. 8, No. 8, e70829, 2013.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  23. Published

    The Transcriptional and Gene Regulatory Network of Lactococcus lactis MG1363 during Growth in Milk. / de Jong, Anne; Hansen, Morten Ejby; Kuipers, Oscar P.; Kilstrup, Mogens; Kok, Jan.

    In: P L o S One, Vol. 8, No. 1, 2013, p. -.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  24. Published

    Typing of Pseudomonas aeruginosa from hemorrhagic pneumonia in mink (Neovison vison). / Salomonsen, Charlotte Mark; Themudo, G. E.; Jelsbak, Lars; Molin, Søren; Høiby, N.; Hammer , Anne Sofie .

    In: Veterinary Microbiology, Vol. 163, No. 1-2, 2013, p. 103-109.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  25. 2012
  26. Published

    A complex multilevel attack on Pseudomonas aeruginosa algT/U expression and AlgT/U activity results in the loss of alginate production. / Sautter, Robert; Ramos, Damaris; Schneper, Lisa; Ciofu, Oana; Wassermann, Tina; Koh, Chong-Lek; Heydorn, Arne; Hentzer, Morton; Høiby, Niels; Kharazmi, Arsalan; Molin, Søren; DeVries, Caroline A.; Ohman, Dennis E.; Mathee, Kalai.

    In: Gene, Vol. 498, No. 2, 2012, p. 242-253.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  27. Published

    Adaptation of Pseudomonas aeruginosa to the cystic fibrosis airway: an evolutionary perspective.. / Folkesson, Anders; Jelsbak, Lars; Yang, Lei; Johansen, Helle Krogh; Ciofu, Oana; Høiby, Niels; Molin, Søren.

    In: Nature Reviews. Microbiology, Vol. 10, No. 12, 2012.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  28. Published
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