Center for Systems Microbiology

  1. 2015
  2. Published

    Bistability in a Metabolic Network Underpins the De Novo Evolution of Colony Switching in Pseudomonas fluorescens. / Gallie, Jenna; Libby, Eric; Bertels, Frederic; Remigi, Philippe; Jendresen, Christian Bille; Ferguson, Gayle C.; Desprat, Nicolas; Buffing, Marieke F.; Sauer, Uwe; Beaumont, Hubertus J. E.; Martinussen, Jan; Kilstrup, Mogens; Rainey, Paul B.

    In: P L o S Biology, Vol. 13, No. 3, e1002109, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  3. Published
  4. 2014
  5. Published

    Dynamics of co-existing Escherichia colilineages in situ of the infant gut and multiplex phenotypic targeted recovery of previously uncultivated bacteria from the human gut. / Gumpert, Heidi.

    Kgs. Lyngby : Technical University of Denmark (DTU), 2014. 196 p.

    Publication: ResearchPh.D. thesis – Annual report year: 2015

  6. Published

    Environmental heterogeneity drives within-host diversification and evolution of Pseudomonas aeruginosa.. / Markussen, Trine; Marvig, Rasmus Lykke; Gómez Lozano, María; Aanæs, Kasper; Burleigh, Alexandra E.; Høiby, Niels; Johansen, Helle Krogh; Molin, Søren; Jelsbak, Lars.

    In: mBio (Online), Vol. 5, No. 5, 2014, p. e01592-e01514.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  7. Published

    Evaluation of whole genome sequencing for outbreak detection of Salmonella enterica. / Leekitcharoenphon, Pimlapas; Nielsen, Eva M.; Kaas, Rolf Sommer; Lund, Ole; Aarestrup, Frank Møller.

    In: P L o S One, Vol. 9, No. 2, e87991, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  8. Published

    Identification of Metabolic Pathways Essential for Fitness of Salmonella Typhimurium In Vivo. / Jelsbak, Lotte; Hartman, Hassan ; Schroll, Casper; Rosenkrantz, Jesper Tjørnholt; Lemire, Sebastien; Wallrodt, Inke; Thomsen, Line Elnif; Poolman, Mark ; Kilstrup, Mogens; Jensen, Peter Ruhdal; Olsen, John E.

    In: P L o S One, Vol. 9, No. 7, e101869, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  9. Published

    Neutrophil elastase-mediated increase in airway temperature during inflammation. / Schmidt, Annika; Belaaouaj, Azzaq; Bissinger, Rosi; Koller, Garrit; Malleret, Laurette; D'Orazio, Ciro; Facchinelli, Martino; Schulte-Hubbert, Bernhard; Molinaro, Antonio; Holst, Otto; Hammermann, Jutta; Schniederjans, Monika; Meyer, Keith C.; Pedersen, Søren Damkiær; Piacentini, Giorgio; Assael, Baroukh; Bruce, Kenneth; Häußler, Susanne; LiPuma, John J.; Seelig, Joachim; Worlitzsch, Dieter; Döring, Gerd.

    In: Journal of Cystic Fibrosis, Vol. 13, No. 6, 2014, p. 623-631.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  10. Published
  11. 2013
  12. Published

    ClpP deletion causes attenuation of Salmonella Typhimurium virulence through mis-regulation of RpoS and indirect control of CsrA and the SPI genes. / Knudsen, Gitte Maegaard; Olsen, John E.; Aabo, Søren; Barrow, Paul; Rychlik, Ivan; Thomsen, Line E.

    In: Microbiology, Vol. 159, No. Part 7, 2013, p. 1497-1509.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  13. Published

    Comparative Genomic Analysis of Rapid Evolution of an Extreme-Drug-Resistant Acinetobacter baumannii Clone. / Tan, Sean Yang-Yi; Chua, Song Lin; Liu, Yang; Høiby, Niels; Andersen, Leif Percival; Givskov, Michael Christian; Song, Zhijun; Yang, Liang.

    In: Genome Biology and Evolution, Vol. 5, No. 5, 2013, p. 807-818.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

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