Center for Microbial Biotechnology

  1. 2014
  2. Published
  3. Published

    A novel platform for heterologous gene expression in Trichoderma reesei (Teleomorph Hypocrea jecorina). / Jørgensen, Mikael Skaanning; Skovlund, Dominique Aubert; Johannesen, Pia Francke; Mortensen, Uffe Hasbro.

    In: Microbial Cell Factories, Vol. 13, No. 1, 2014, p. 33.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  4. Published

    Assessment of aflatoxigenicAspergillusand other fungi in millet and sesame from Plateau State, Nigeria. / Ezekiel, C.N.; Udom, I.E.; Frisvad, Jens Christian; Adetunji, M.C.; Houbraken, J.; Fapohunda, S.O.; Samson, R.A.; Atanda, O.O.; Agi-Otto, M.C.; Onashile, O.A.

    In: Mycology, Vol. 5, No. 1, 2014, p. 16-22.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  5. Published

    Effects of pregnancy on obesity-induced inflammation in a mouse model of fetal programming. / Ingvorsen, Camilla; Thysen, Anna Hammerich; Fernandez-Twinn, D.; Nordby, Pernille; Nielsen, Kristian Fog; Ozanne, S. E.; Pedersen, Susanne Brix; Hellgren, Lars.

    In: International Journal of Obesity, Vol. 38, No. 10, 2014, p. 1282-1289.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  6. Published

    Phenotypic differentiation of species from Aspergillus section Flavi on neutral red desiccated coconut agar. / Atanda, O. O.; Adetunji, M. C.; Ezekiel, C. N.; Houbraken, J.; Frisvad, Jens Christian; Samson, R. A.

    In: World Mycotoxin Journal, Vol. 7, No. 3, 2014, p. 335-344.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  7. 2013
  8. Published
  9. Published

    A Mild Method for Regioselective Labeling of Aromatics with Radioactive Iodine. / Rønnest, Mads Holger; Nissen, Felix; Pedersen, Palle Jacob; Larsen, Thomas Ostenfeld; Mier, Walter; Clausen, Mads Hartvig.

    In: European Journal of Organic Chemistry, Vol. 2013, No. 19, 2013, p. 3970-3973.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  10. Published

    Applying mechanistic models in bioprocess development.. / Lencastre Fernandes, Rita; Bodla, Vijaya Krishna; Carlquist, Magnus; Heins, Anna-Lena; Eliasson Lantz, Anna; Sin, Gürkan; Gernaey, Krist V.

    Advances in Biochemical Engineering/Biotechnology . Springer, 2013. p. 137–166 (Advances in Biochemical Engineering. Biotechnology, Vol. 132).

    Publication: Research - peer-reviewBook chapter – Annual report year: 2013

  11. Published

    A universal fixation method based on quaternary ammonium salts (RNAlater) for omics-technologies: Saccharomyces cerevisiae as a case study. / Eijsden, Rudy G. E. van; Stassen, Catherine; Daenen, Luk; Mulders, Sebastiaan E. Van; Bapat, Prashant Madhusudhan; Siewers, Verena; Goossens, Katty V. Y.; Nielsen, Jens; Delvaux, Freddy R.; Hummelen, Paul Van; Devreese, Bart; Willaert, Ronnie G.

    In: Biotechnology Letters, Vol. 35, No. 6, 2013, p. 891-900.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  12. Published

    A validated system for ligation-free USER™ -based assembly of expression vectors for mammalian cell engineering. / Lund, Anne Mathilde; Kildegaard, Helene Faustrup; Hansen, Bjarne Gram; Holm, Dorte Koefoed; Andersen, Mikael Rørdam; Mortensen, Uffe Hasbro.

    2013. Poster session presented at 23rd ESACT meeting, Lille, France.

    Publication: Research - peer-reviewPoster – Annual report year: 2013

  13. Published

    Bacillus amyloliquefaciens ssp. plantarum strains as potential protective starter cultures for the production of Bikalga, an alkaline fermented food. / Compaor, C.S.; Nielsen, D.S.; Sawadogo-Lingani, H.; Berner, T. S.; Nielsen, Kristian Fog; Adimpong, David Bichala; Diawara, B.; Ouedraogo, G.A.; Jakobsen, M.; Thorsen, L.

    In: Journal of Applied Microbiology, Vol. 115, No. 1, 2013, p. 133-146.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  14. Published

    Cell mass and cell cycle dynamics of an asynchronous budding yeast population : Experimental observations, flow cytometry data analysis, and multi-scale modeling. / Lencastre Fernandes, Rita; Carlquist, Magnus; Lundin, Luisa; Heins, Anna-Lena; Dutta, Abhishek; Sørensen, Søren J.; Jensen, Anker Degn; Nopens, Ingmar; Eliasson Lantz, Anna; Gernaey, Krist.

    In: Biotechnology and Bioengineering (Print), Vol. 110, No. 3, 2013, p. 812-826.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  15. Published

    Characterization of microbial communities and fungal metabolites on field grown strawberries from organic and conventional production. / Jensen, Birgit; Knudsen, Inge M. B.; Andersen, Birgitte; Nielsen, Kristian Fog; Thrane, Ulf; Jensen, Dan Funck; Larsen, John.

    In: International Journal of Food Microbiology, Vol. 160, No. 3, 2013, p. 313-322.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  16. Published

    Co-production of surfactin and a novel bacteriocin by Bacillus subtilis subsp. subtilis H4 isolated from bikalga, an African alkaline Hibiscus sabdariffa seed fermented condiment.. / Compaore, C. S.; Nielsen, Dennis S.; Ouoba, L. I. I.; Berner, Torben Sune; Nielsen, Kristian Fog; Sawadogo-Lingani, H.; Diawara, B.; Ouedraogo, G. A.; Jakobsen, Mogens; Thorsen, Line.

    In: International Journal of Food Microbiology, Vol. 162, No. 3, 2013, p. 297-307.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  17. Published

    Cytotoxicity and mycotoxin production of shellfish‐derived Penicillium spp., a risk for shellfish consumers. / Geiger, M.; Guitton, Y.; Vansteelandt, M.; Kerzaon, I.; Blanchet, E.; Robiou du Pont, T.; Frisvad, Jens Christian; Hess, P.; Pouchus, Y.F.; Grovel, O.

    In: Letters in Applied Microbiology, Vol. 57, No. 5, 2013, p. 385-392.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  18. Published
  19. Published

    Heterologous expression and characterization of bacterial 2-C-methyl-d-erythritol-4-phosphate pathway in Saccharomyces cerevisiae. / Carlsen, Simon; Ajikumar, Parayil Kumaran; Formenti, Luca Riccardo; Zhou, Kang; Phon, Too Heng; Nielsen, Michael Lynge; Eliasson Lantz, Anna; Kielland-Brandt, Morten; Stephanopoulos, Gregory.

    In: Applied Microbiology and Biotechnology, Vol. 97, No. 13, 2013, p. 5753-5769.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  20. Published

    Multilocus phylogeny and MALDI-TOF analysis of the plant pathogenic species Alternaria dauci and relatives. / Brun, Sophie; Madrid, Hugo; Gerrits Van Den Ende, Bert; Andersen, Birgitte; Marinach-Patrice, Carine; Mazier, Dominique; De Hoog, G. Sybren.

    In: Fungal Biology, Vol. 117, No. 1, 2013, p. 32-40.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  21. Published

    One Fungus, One Name: Defining the Genus Fusarium in a Scientifically Robust Way That Preserves Longstanding Use.. / Geiser, David M.; Aoki, Takayuki; Bacon, Charles W.; E. Baker, Scott; Bhattacharyya, Madan K.; Brandt, Mary E.; Brown, Daren W. ; Burgess, Lester W. ; Chulze, Sofia ; Coleman, Jeffrey J. ; Correll, James C. ; Covert, Sarah F. ; Crous, Pedro W. ; Cuomo, Christina A.; Sybren De Hoog, G.; Di Pietro, Antonio; Elmer, Wade H. ; Epstein, Lynn; Frandsen, Rasmus John Normand; Freeman, Stanley; Gagkaeva, Tatiana; Glenn, Anthony E.; Gordon, Thomas R.; Gregory, Nancy F.; Hammond-Kosack, Kim E.; Hanson, Linda E. ; Jímenez-Gasco, María del Mar; Kang, Seogchan; Kistler, H. Corby ; Kuldau, Gretchen A.; Leslie, John F. ; Logrieco, Antonio; Lu, Guozhong; Lysøe, Erik; Ma, Li-Jun; P. McCormick, Susan; Migheli, Quirico; Moretti, Antonio; Munaut, Françoise; O'Donnell, Kerry; Pfenning, Ludwig; Ploetz, Randy C. ; Proctor, Robert H. ; Rehner, Stephen A. ; Robert, Vincent A. R. G. ; Rooney, Alejandro P. ; Salleh, Baharuddin bin ; Scandiani, Maria Mercedes ; Scauflaire, Jonathan; Short, Dylan P. G.; Steenkamp, Emma; Suga, Haruhisa; Summerell, Brett A. ; Sutton, Deanna A.; Thrane, Ulf; Trail, Francis; Diepeningen, Anne Van ; VanEtten, Hans D. ; Viljoen, Altus; Waalwijk, Cees; Ward, Todd J.; Wingfield, Michael J. ; Xu, Jin-Rong; Yang, Xiao-Bing ; Yli-Mattila, Tapani; Zhang, Ning.

    In: Phytopathology, Vol. 103, No. 5, 2013, p. 400-408.

    Publication: Research - peer-reviewLetter – Annual report year: 2013

  22. Published

    Penicillium subrubescens, a new species efficiently producing inulinase. / Mansouri, S.; Houbraken, J.; Samson, R.A.; Frisvad, Jens Christian; Christensen, M.; Tuthill, D. E.; Koutaniemi, S.; Hatakka, A.; Lankinen, P.

    In: Antonie van Leeuwenhoek, Vol. 103, No. 6, 2013, p. 1343-1357.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  23. Published

    Phylogenetic analyses of RPB1 and RPB2 support a middle Cretaceous origin for a clade comprising all agriculturally and medically important fusaria. / O’Donnell, Kerry; Rooney, Alejandro P.; Proctor, Robert H.; Brown, Daren W.; McCormick, Susan P.; Ward, Todd J.; Frandsen, Rasmus John Normand; Lysøe, Erik; Rehner, Stephen A.; Aoki, Takayuki; Robert, Vincent A.R.G.; Crous, Pedro W.; Groenewald, Johannes Z.; Kang, Seogchan; Geiser, David M.

    In: Fungal Genetics and Biology, Vol. 52, 2013, p. 20-31.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  24. Published

    Phylogenetic relationships among members of the Fusarium solani species complex in human infections and the descriptions of F. keratoplasticum sp. nov. and F. petroliphilum stat. nov.. / Short, Dylan P.G.; O’Donnell, Kerry; Thrane, Ulf; Nielsen, Kristian Fog; Zhang, Ning; Juba, Jean H.; Geiser, David M.

    In: Fungal Genetics and Biology, Vol. 53, 2013, p. 59-70.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  25. Published

    Production of fusarielins by Fusarium. / Sørensen, Jens Laurids; Akk, Elina; Thrane, Ulf; Giese, Henriette; Sondergaard, Teis Esben.

    In: International Journal of Food Microbiology, Vol. 160, No. 3, 2013, p. 206-211.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  26. Published
  27. Published

    RNA-seq based expression analysis of the CHO cell protein secretion pathway. / Lund, Anne Mathilde; Kaas, Christian Schrøder; Kildegaard, Helene Faustrup; Kristensen, Claus; Andersen, Mikael Rørdam.

    2013. Poster session presented at 3rd Annual Next Generation Sequencing Asia Congress, Singapore, Singapore.

    Publication: Research - peer-reviewPoster – Annual report year: 2013

  28. Published

    Saccharomyces cerevisiae–Based Platform for Rapid Production and Evaluation of Eukaryotic Nutrient Transporters and Transceptors for Biochemical Studies and Crystallography. / Scharff-Poulsen, Peter; Pedersen, Per Amstrup.

    In: P L o S One, Vol. 8, No. 10, e76851, 2013.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  29. Published

    Screening the Biosphere: The Fungicolous Fungus Trichoderma phellinicola, a Prolific Source of Hypophellins, New 17-, 18-, 19-, and 20-Residue Peptaibiotics. / Röhrich, Christian René ; Iversen, Anita; Jaklitsch, Walter Michael; Voglmayr, Hermann; Vilcinskas, Andreas; Nielsen, Kristian Fog; Thrane, Ulf; Döhren, Hans von ; Brückner, Hans; Degenkolb, Thomas.

    In: Chemistry & Biodiversity, Vol. 10, 2013, p. 787-812.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  30. Published

    The biodiversity of Aspergillus section Flavi in brazil nuts: From rainforest to consumer. / Calderari, Thaiane O.; Iamanaka, Beatriz T.; Frisvad, Jens Christian; Pitt, John I.; Sartori, Daniele; Pereira, Jose Luiz; Fungaro, Maria Helena P.; Taniwaki, Marta H.

    In: International Journal of Food Microbiology, Vol. 160, No. 3, 2013, p. 267-272.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  31. Published

    Two new Penicillium species Penicillium buchwaldii and Penicillium spathulatum, producing the anticancer compound asperphenamate.. / Frisvad, Jens Christian; Houbraken, Jos; Popma, Suuske; Samson, Robert A.

    In: F E M S Microbiology Letters, Vol. 339, No. 2, 2013, p. 77-92.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  32. 2012
  33. Published

    Microbial isoprenoid production. / Carlsen, Simon; Kielland-Brandt, Morten (Supervisor); Eliasson Lantz, Anna (Supervisor); Nielsen, Michael Lynge (Supervisor).

    Department of Systems Biology, DTU, 2012. 263 p.

    Publication: ResearchPh.D. thesis – Annual report year: 2013

  34. Published
  35. Published
  36. Published

    Active Match Load Circuit Intended for Testing Piezoelectric Transformers. / Andersen, Thomas; Rødgaard, Martin Schøler; Andersen, Michael A. E.

    6th IET International Conference on Power Electronics, Machines and Drives. Institution of Engineering and Technology, 2012.

    Publication: Research - peer-reviewArticle in proceedings – Annual report year: 2012

  37. Published

    Adaptive evolution of drug targets in producer and non-producer organisms. / Hansen, Bjarne Gram; Sun, Xin E.; Genee, Hans Jasper; Kaas, Christian Schrøder; Nielsen, Jakob Blæsbjerg; Frisvad, Jens Christian; Hedstrom, Lizbeth.

    In: Biochemical Journal, Vol. 441, No. 1, 2012, p. 219-226.

    Publication: Research - peer-reviewJournal article – Annual report year: 2011

  38. Published

    Ajoene, a Sulfur-Rich Molecule from Garlic, Inhibits Genes Controlled by Quorum Sensing. / Jakobsen, Tim Holm; van Gennip, Maria; Phipps, Richard Kerry; Shanmugham, Meenakshi Sundaram; Christensen, Louise Dahl; Alhede, Morten; Skindersoe, Mette Eline; Rasmussen, Thomas Bovbjerg; Friedrich, Karlheinz; Uthe, Friedrich; Jensen, Peter Østrup; Moser, Claus Ernst; Nielsen, Kristian Fog; Eberl, Leo; Larsen, Thomas Ostenfeld; Tanner, David; Høiby, Niels; Bjarnsholt, Thomas; Givskov, Michael.

    In: Antimicrobial Agents and Chemotherapy, Vol. 56, No. 5, 2012, p. 2314-2325.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  39. Published

    A polyphasic approach for the characterization of endophytic Alternaria strains isolated from grapevines. / Polizzotto, Rachele; Andersen, Birgitte; Martini, Marta; Grisan, Simone; Assante, Gemma; Musetti, Rita.

    In: Journal of Microbiological Methods, Vol. 88, No. 1, 2012, p. 162-171.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  40. Published

    Applied systems biology - vanillin production in Saccharomyces cerevisiae. / Strucko, Tomas; Eriksen, Carsten; Nielsen, J.; Mortensen, Uffe Hasbro.

    In: The F E B S Journal (Online), Vol. 279, No. Supplement s1, 2012, p. 525-525.

    Publication: Research - peer-reviewConference abstract in journal – Annual report year: 2012

  41. Published

    Aspergillus bertholletius sp. nov. from Brazil Nuts. / Taniwaki, Marta H.; Pitt, John I.; Iamanaka, Beatriz T.; Sartori, Daniele; Copetti, Marina V.; Balajee, Arun; Fungaro, Maria Helena P.; Frisvad, Jens Christian.

    In: P L o S One, Vol. 7, No. 8, 2012.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  42. Published
  43. Published

    Atlantinone A, a meroterpenoid produced by Penicillium ribeum and several cheese associated Penicillium species. / Dalsgaard, Petur W.; Petersen, Bent O.; Duus, Jens Ø.; Zidorn, Christian; Frisvad, Jens Christian; Christophersen, Carsten; Larsen, Thomas Ostenfeld.

    In: Metabolites, Vol. 2, 2012, p. 214-220.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  44. Published

    Bioconversion of crude glycerol feedstocks into ethanol by Pachysolen tannophilus. / Liu, Xiaoying; Jensen, Peter Ruhdal; Workman, Mhairi.

    In: Bioresource Technology, Vol. 104, 2012, p. 559-586.

    Publication: Research - peer-reviewJournal article – Annual report year: 2011

  45. Published
  46. Published
  47. Published

    Chemical and molecular characterization of Phomopsis and Cytospora-like endophytes from different host plants in Brazil. / Abreu, Lucas M.; Costa, Sarah S.; Pfenning, Ludwig H.; Takahashi, Jacqueline A.; Larsen, Thomas Ostenfeld; Andersen, Birgitte.

    In: Fungal Biology, Vol. 116, No. 2, 2012, p. 249-260.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  48. Published

    Children s health and its association with indoor environments in Danish homes and daycare centres – methods. / Clausen, Geo; Høst, A.; Toftum, Jørn; Bekö, Gabriel; Weschler, Charles J.; Callesen, M.; Buhl, S.; Ladegaard, M. B.; Langer, S.; Andersen, Birgitte; Sundell, Jan; Bornehag, Carl-Gustaf; Sigsgaard, T.

    In: Indoor Air, Vol. 22, 2012, p. 467-475.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  49. Published

    Chitin elicitation of natural product production in marine bacteria. / Månsson, Maria; Wietz, Matthias; Larsen, Thomas Ostenfeld; Gram, Lone.

    2012. Abstract from Gordon Conference on Marine Natural Products, Venture, CA, United States.

    Publication: Research - peer-reviewConference abstract for conference – Annual report year: 2012

  50. Published
  51. Published

    Comparison of laser diffraction and image analysis for measurement of Streptomyces coelicolor cell clumps and pellets.. / Rønnest, Nanna Petersen; Stocks, Stuart M; Eliasson Lantz, Anna; Gernaey, Krist.

    In: Biotechnology Letters, Vol. 34, No. 8, 2012, p. 1465-1473.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  52. Published

    Delimitation and characterisation of Talaromyces purpurogenus and related species. / Yilmaz, N.; Houbraken, J.; Hoekstra, E. S.; Frisvad, Jens Christian; Visagie, C. M.; Samson, Ramona.

    In: Persoonia, Vol. 29, 2012, p. 39-54.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  53. Published
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