Center for Microbial Biotechnology

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  1. 2013
  2. Published

    Accurate prediction of secondary metabolite gene clusters in filamentous fungi.. / Andersen, Mikael Rørdam; Nielsen, Jakob Blæsbjerg; Klitgaard, Andreas; Petersen, Lene Maj; Zachariasen, Mia; Hansen, Tilde J; Holberg Blicher, Lene; Gotfredsen, Charlotte Held; Larsen, Thomas Ostenfeld; Nielsen, Kristian Fog; Mortensen, Uffe Hasbro.

    In: National Academy of Sciences. Proceedings, Vol. 110, No. 1, 2013, p. E99-E107.

    Publication: Research - peer-review › Journal article – Annual report year: 2013

  3. Published

    Applying mechanistic models in bioprocess development.. / Lencastre Fernandes, Rita; Bodla, Vijaya Krishna; Carlquist, Magnus; Heins, Anna-Lena; Eliasson Lantz, Anna; Sin, Gürkan; Gernaey, Krist V.

    In: Advances in Biochemical Engineering/Biotechnology . Springer, 2013. p. 137–166 (Advances in Biochemical Engineering. Biotechnology, Vol. 132).

    Publication: Research - peer-review › Book chapter – Annual report year: 2013

  4. Accepted

    Bacillus amyloliquefaciens ssp. plantarum strains as potential protective starter cultures for the production of Bikalga, an alkaline fermented food. / Compaor, C.S.; Nielsen, D.S.; Sawadogo-Lingani, H.; Berner, T.S.; Nielsen, Kristian Fog; Adimpong, David Bichala; Diawara, B.; Ouedraogo, G.A.; Jakobsen, M.; Thorsen, L.

    In: Journal of Applied Microbiology, 2013.

    Publication: Research - peer-review › Journal article – Annual report year: 2013

  5. Published

    Cell mass and cell cycle dynamics of an asynchronous budding yeast population : Experimental observations, flow cytometry data analysis, and multi-scale modeling. / Lencastre Fernandes, Rita; Carlquist, Magnus; Lundin, Luisa; Heins, Anna-Lena; Dutta, Abhishek; Sørensen, Søren J.; Jensen, Anker Degn; Nopens, Ingmar; Eliasson Lantz, Anna; Gernaey, Krist.

    In: Biotechnology and Bioengineering (Print), Vol. 110, No. 3, 2013, p. 812-826.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  6. Published

    Characterization of microbial communities and fungal metabolites on field grown strawberries from organic and conventional production. / Jensen, Birgit; Knudsen, Inge M.B.; Andersen, Birgitte; Nielsen, Kristian Fog; Thrane, Ulf; Jensen, Dan Funck; Larsen, John.

    In: International Journal of Food Microbiology, Vol. 160, No. 3, 2013, p. 313-322.

    Publication: Research - peer-review › Journal article – Annual report year: 2013

  7. Published

    Co-production of surfactin and a novel bacteriocin by Bacillus subtilis subsp. subtilis H4 isolated from bikalga, an African alkaline Hibiscus sabdariffa seed fermented condiment.. / Compaore, C. S.; Nielsen, Dennis S.; Ouoba, L. I. I.; Berner, Torben Sune; Nielsen, Kristian Fog; Sawadogo-Lingani, H.; Diawara, B.; Ouedraogo, G. A.; Jakobsen, Mogens; Thorsen, Line.

    In: International Journal of Food Microbiology, Vol. 162, No. 3, 2013, p. 297-307.

    Publication: Research - peer-review › Journal article – Annual report year: 2013

  8. Published

    Expression and functional studies of genes involved in transport and metabolism of glycerol in Pachysolen tannophilus.. / Liu, Xiaoying; Mortensen, Uffe Hasbro; Workman, Mhairi.

    In: Microbial Cell Factories, Vol. 12, 2013, p. 27.

    Publication: Research - peer-review › Journal article – Annual report year: 2013

  9. Published

    Multilocus phylogeny and MALDI-TOF analysis of the plant pathogenic species Alternaria dauci and relatives. / Brun, Sophie; Madrid, Hugo; Gerrits Van Den Ende, Bert; Andersen, Birgitte; Marinach-Patrice, Carine; Mazier, Dominique; De Hoog, G. Sybren.

    In: Fungal Biology, Vol. 117, No. 1, 2013, p. 32-40.

    Publication: Research - peer-review › Journal article – Annual report year: 2013

  10. Published

    Phylogenetic analyses of RPB1 and RPB2 support a middle Cretaceous origin for a clade comprising all agriculturally and medically important fusaria. / O’Donnell, Kerry; Rooney, Alejandro P.; Proctor, Robert H.; Brown, Daren W.; McCormick, Susan P.; Ward, Todd J.; Frandsen, Rasmus John Normand; Lysøe, Erik; Rehner, Stephen A.; Aoki, Takayuki; Robert, Vincent A.R.G.; Crous, Pedro W.; Groenewald, Johannes Z.; Kang, Seogchan; Geiser, David M.

    In: Fungal Genetics and Biology, Vol. 52, 2013, p. 20-31.

    Publication: Research - peer-review › Journal article – Annual report year: 2013

  11. Published

    Phylogenetic relationships among members of the Fusarium solani species complex in human infections and the descriptions of F. keratoplasticum sp. nov. and F. petroliphilum stat. nov.. / Short, Dylan P.G.; O’Donnell, Kerry; Thrane, Ulf; Nielsen, Kristian Fog; Zhang, Ning; Juba, Jean H.; Geiser, David M.

    In: Fungal Genetics and Biology, Vol. 53, 2013, p. 59-70.

    Publication: Research - peer-review › Journal article – Annual report year: 2013

  12. Published

    Production of fusarielins by Fusarium. / Sørensen, Jens Laurids; Akk, Elina; Thrane, Ulf; Giese, Henriette; Sondergaard, Teis Esben.

    In: International Journal of Food Microbiology, Vol. 160, No. 3, 2013, p. 206-211.

    Publication: Research - peer-review › Journal article – Annual report year: 2013

  13. Published

    Screening the Biosphere: The Fungicolous Fungus Trichoderma phellinicola, a Prolific Source of Hypophellins, New 17-, 18-, 19-, and 20-Residue Peptaibiotics. / Röhrich, Christian René ; Iversen, Anita; Jaklitsch, Walter Michael; Voglmayr, Hermann; Vilcinskas, Andreas; Nielsen, Kristian Fog; Thrane, Ulf; Döhren, Hans von ; Brückner, Hans; Degenkolb, Thomas.

    In: Chemistry & Biodiversity, Vol. 10, 2013, p. 787-812.

    Publication: Research - peer-review › Journal article – Annual report year: 2013

  14. Published

    The biodiversity of Aspergillus section Flavi in brazil nuts: From rainforest to consumer. / Calderari, Thaiane O.; Iamanaka, Beatriz T.; Frisvad, Jens Christian; Pitt, John I.; Sartori, Daniele; Pereira, Jose Luiz; Fungaro, Maria Helena P.; Taniwaki, Marta H.

    In: International Journal of Food Microbiology, Vol. 160, No. 3, 2013, p. 267-272.

    Publication: Research - peer-review › Journal article – Annual report year: 2013

  15. Published

    Two new Penicillium species Penicillium buchwaldii and Penicillium spathulatum, producing the anticancer compound asperphenamate.. / Frisvad, Jens Christian; Houbraken, Jos; Popma, Suuske; Samson, Robert A.

    In: F E M S Microbiology Letters, Vol. 339, No. 2, 2013, p. 77-92.

    Publication: Research - peer-review › Journal article – Annual report year: 2013

  16. 2012
  17. Published

    Microbial isoprenoid production. / Carlsen, Simon; Kielland-Brandt, Morten (Supervisor); Eliasson Lantz, Anna (Supervisor); Nielsen, Michael Lynge (Supervisor).

    Department of Systems Biology, DTU, 2012. 263 p.

    Publication: Research › Ph.d. thesis – Annual report year: 2013

  18. Published

    Mapping of secondary metabolites to their synthase genes in Aspergillus species. / Klejnstrup, Marie Louise; Larsen, Thomas Ostenfeld (Main supervisor); Gotfredsen, Charlotte Held (Supervisor); Mortensen, Uffe Hasbro (Supervisor).

    Department of Systems Biology, DTU, 2012. 306 p.

    Publication: Research › Ph.d. thesis – Annual report year: 2013

  19. Published

    Investigating genotype-phenotype relationships in Saccharomyces cerevisiae metabolic network through stoichiometric modeling. / Brochado, Ana Rita; Mortensen, Uffe Hasbro (Supervisor); Patil, Kiran Raosaheb (Supervisor).

    Department of Systems Biology, DTU, 2012. 165 p.

    Publication: Research › Ph.d. thesis – Annual report year: 2013

  20. Published

    Active Match Load Circuit Intended for Testing Piezoelectric Transformers. / Andersen, Thomas; Rødgaard, Martin Schøler; Andersen, Michael A. E.

    In: 6th IET International Conference on Power Electronics, Machines and Drives. 2012.

    Publication: Research - peer-review › Article in proceedings – Annual report year: 2012

  21. Published

    Adaptive evolution of drug targets in producer and non-producer organisms. / Hansen, Bjarne Gram; Sun, Xin E.; Genee, Hans Jasper; Kaas, Christian Schrøder; Nielsen, Jakob Blæsbjerg; Frisvad, Jens Christian; Hedstrom, Lizbeth.

    In: Biochemical Journal, Vol. 441, No. 1, 2012, p. 219-226.

    Publication: Research - peer-review › Journal article – Annual report year: 2011

  22. Published

    Ajoene, a Sulfur-Rich Molecule from Garlic, Inhibits Genes Controlled by Quorum Sensing. / Jakobsen, Tim Holm; van Gennip, Maria; Phipps, Richard Kerry; Shanmugham, Meenakshi Sundaram; Christensen, Louise Dahl; Alhede, Morten; Skindersoe, Mette Eline; Rasmussen, Thomas Bovbjerg; Friedrich, Karlheinz; Uthe, Friedrich; Jensen, Peter Østrup; Moser, Claus Ernst; Nielsen, Kristian Fog; Eberl, Leo; Larsen, Thomas Ostenfeld; Tanner, David; Høiby, Niels; Bjarnsholt, Thomas; Givskov, Michael.

    In: Antimicrobial Agents and Chemotherapy, Vol. 56, No. 5, 2012, p. 2314-2325.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  23. Published

    A polyphasic approach for the characterization of endophytic Alternaria strains isolated from grapevines. / Polizzotto, Rachele; Andersen, Birgitte; Martini, Marta; Grisan, Simone; Assante, Gemma; Musetti, Rita.

    In: Journal of Microbiological Methods, Vol. 88, No. 1, 2012, p. 162-171.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  24. Published

    Applied systems biology - vanillin production in Saccharomyces cerevisiae. / Strucko, Tomas; Eriksen, Carsten; Nielsen, J.; Mortensen, Uffe Hasbro.

    In: The F E B S Journal (Online), Vol. 279, No. Supplement s1, 2012, p. 525-525.

    Publication: Research - peer-review › Conference abstract in journal – Annual report year: 2012

  25. Published

    Aspergillus bertholletius sp. nov. from Brazil Nuts. / Taniwaki, Marta H.; Pitt, John I.; Iamanaka, Beatriz T.; Sartori, Daniele; Copetti, Marina V.; Balajee, Arun; Fungaro, Maria Helena P.; Frisvad, Jens Christian.

    In: P L o S One, Vol. 7, No. 8, 2012.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  26. Published

    Aspergillus hydrophobins - Identification, classification and characterization. / Jensen, Britt Guillaume; Nielsen, Kristian Fog (Main supervisor); Søndergaard, Ib (Supervisor); Pedersen, Mona Højgaard (Supervisor); Frisvad, Jens Christian (Supervisor); Jelsbak, Lars (Supervisor); Jacobsen, Susanne (Supervisor).

    Department of Systems Biology, DTU, 2012. 212 p.

    Publication: Research › Ph.d. thesis – Annual report year: 2013

  27. Published

    Atlantinone A, a meroterpenoid produced by Penicillium ribeum and several cheese associated Penicillium species. / Dalsgaard, Petur W.; Petersen, Bent O.; Duus, Jens Ø.; Zidorn, Christian; Frisvad, Jens Christian; Christophersen, Carsten; Larsen, Thomas Ostenfeld.

    In: Metabolites, Vol. 2, 2012, p. 214-220.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  28. Published

    Bioconversion of crude glycerol feedstocks into ethanol by Pachysolen tannophilus. / Liu, Xiaoying; Jensen, Peter Ruhdal; Workman, Mhairi.

    In: Bioresource Technology, Vol. 104, 2012, p. 559-586.

    Publication: Research - peer-review › Journal article – Annual report year: 2011

  29. Published

    Characterization of the AN6448 cluster in Aspergillus nidulans. / Nielsen, Jakob Blæsbjerg; Klejnstrup, Marie Louise; Khorsand-Jamal, Paiman; Holm, Dorte Koefoed; Nielsen, Michael Lynge; Kabat, Anna Monika; Rank, Christian; Gotfredsen, Charlotte Held; Larsen, T. O.; Mortensen, Uffe Hasbro.

    In: Planta Medica, Vol. 78, No. 11, 2012, p. 1113-1113.

    Publication: Research - peer-review › Conference abstract in journal – Annual report year: 2012

  30. Published

    Chemical analysis of a genome wide polyketide synthase gene deletion library in Aspergillus nidulans. / Larsen, Thomas Ostenfeld; Klejnstrup, Marie Louise; Nielsen, Jakob Blæsbjerg; Holm, Dorte Koefoed; Petersen, Lene Maj; Klitgaard, Andreas; Nielsen, Kristian Fog; Andersen, Mikael Rørdam; Mortensen, Uffe Hasbro.

    2012. Abstract from Directing Biosynthesis III, Nottingham, United Kingdom.

    Publication: Research - peer-review › Conference abstract for conference – Annual report year: 2012

  31. Published

    Chemical and molecular characterization of Phomopsis and Cytospora-like endophytes from different host plants in Brazil. / Abreu, Lucas M.; Costa, Sarah S.; Pfenning, Ludwig H.; Takahashi, Jacqueline A.; Larsen, Thomas Ostenfeld; Andersen, Birgitte.

    In: Fungal Biology, Vol. 116, No. 2, 2012, p. 249-260.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  32. Published

    Children s health and its association with indoor environments in Danish homes and daycare centres – methods. / Clausen, Geo; Høst, A.; Toftum, Jørn; Bekö, Gabriel; Weschler, Charles J.; Callesen, M.; Buhl, S.; Ladegaard, M. B.; Langer, S.; Andersen, Birgitte; Sundell, Jan; Bornehag, Carl-Gustaf; Sigsgaard, T.

    In: Indoor Air, Vol. 22, 2012, p. 467-475.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  33. Published

    Chitin elicitation of natural product production in marine bacteria. / Månsson, Maria; Wietz, Matthias; Larsen, Thomas Ostenfeld; Gram, Lone.

    2012. Abstract from Gordon Conference on Marine Natural Products, Venture, CA, United States.

    Publication: Research - peer-review › Conference abstract for conference – Annual report year: 2012

  34. Published

    Comparative chemistry of Aspergillus oryzae (RIB40) and A. flavus (NRRL 3357). / Rank, Christian; Klejnstrup, Marie Louise; Petersen, Lene Maj; Kildgaard, Sara; Frisvad, Jens Christian; Gotfredsen, Charlotte Held; Larsen, Thomas Ostenfeld.

    In: Metabolites, Vol. 2, 2012, p. 39-56.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  35. Published

    Comparison of laser diffraction and image analysis for measurement of Streptomyces coelicolor cell clumps and pellets.. / Rønnest, Nanna Petersen; Stocks, Stuart M; Eliasson Lantz, Anna; Gernaey, Krist.

    In: Biotechnology Letters, Vol. 34, No. 8, 2012, p. 1465-1473.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  36. Published

    Delimitation and characterisation of Talaromyces purpurogenus and related species. / Yilmaz, N.; Houbraken, J.; Hoekstra, E. S.; Frisvad, Jens Christian; Visagie, C. M.; Samson, Ramona.

    In: Persoonia, Vol. 29, 2012, p. 39-54.

    Publication: Research - peer-review › Journal article – Annual report year: 2013

  37. Published

    Development of a screening approach for exploring cell factory potential through metabolic flux analysis and physiology. / Knudsen, Peter Boldsen; Nielsen, Kristian Fog; Thykær, Jette.

    In: New Biotechnology, 2012, p. S212.

    Publication: Research - peer-review › Conference abstract in journal – Annual report year: 2012

  38. Published

    Discovery of novel secondary metabolites in Aspergillus aculeatus. / Petersen, Lene Maj; Holm, Dorte Koefoed; Gotfredsen, Charlotte Held; Larsen, Thomas Ostenfeld.

    In: Planta Medica, Vol. 78, No. 11, 2012, p. 1159-1160.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  39. Published

    Disparate SAR Data of Griseofulvin Analogues for the Dermatophytes Trichophyton mentagrophytes, T. rubrum, and MDA-MB-231 Cancer Cells. / Rønnest, Mads Holger; Raab, Marc S.; Anderhub, Simon; Boesen, Sven; Krämer, Alwin; Larsen, Thomas Ostenfeld; Clausen, Mads Hartvig.

    In: Journal of Medicinal Chemistry, Vol. 55, No. 2, 2012, p. 652-660.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  40. Published

    Draft Genome Sequence of the Yeast Pachysolen tannophilus CBS 4044/NRRL Y-2460. / Liu, Xiaoying ; Kaas, Rolf Sommer; Jensen, Peter Ruhdal; Workman, Mhairi.

    In: Eukaryotic Cell (Online Edition), Vol. 11, No. 6, 2012, p. 827.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  41. Published

    Dynamics in population heterogeneity during batch and continuous fermentation of Saccharomyces cerevisiae. / Heins, Anna-Lena; Lencastre Fernandes, Rita; Lundin, L.; Carlquist, M.; Sörensen, S.; Gernaey, Krist; Eliasson Lantz, Anna.

    In: New Biotechnology, Vol. 29S, 2012, p. S199-S200.

    Publication: Research - peer-review › Conference abstract in journal – Annual report year: 2012

  42. Published

    Elucidation of the biosynthesis of meroterpenoid yanuthone D in Aspergillus Niger. / Holm, Dorte Koefoed; Petersen, Lene Maj; Klitgaard, Andreas; Jarczynska, Zofia Dorota; Larsen, Thomas Ostenfeld; Mortensen, Uffe Hasbro.

    In: Planta Medica, Vol. 78, No. 11, 2012, p. 1069-1069.

    Publication: Research - peer-review › Conference abstract in journal – Annual report year: 2012

  43. Published

    Rasamsonia, a new genus comprising thermotolerant and thermophilic Talaromyces and Geosmithia species. / Houbraken, J.; Spierenburg, H.; Frisvad, Jens Christian.

    In: Antonie van Leeuwenhoek, Vol. 101, No. 2, 2012, p. 403-421.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  44. Published

    Erratum to “Food fermentations: microorganisms with technological beneficial use” [International Journal of Food Microbiology 154 (2012) 87–97]. / Bourdichon, François; Casaregola, Serge; Farrokh, Choreh; Frisvad, Jens Christian; Gerds, Monica L.; Hammes, Walter P.; Harnett, James; Huys, Geert; Laulund, Svend; Ouwehand, Arthur; Powell, Ian B.; Prajapati, Jashbhai B.; Seto, Yasuyuki; Ter Schure, Eelko; Van Boven, Aart; Vankerckhoven, Vanessa; Zgoda, Annabelle; Tuijtelaars, Sandra; Hansen, Egon Bech.

    In: International Journal of Food Microbiology, Vol. 156, No. 301, 2012.

    Publication: Research - peer-review › Comment/debate – Annual report year: 2012

  45. Published

    Establishing a high throughput method for medium optimization – a case study using Streptomyces lividans as host for production of heterologous protein. / Rattleff, Stig; Thykaer, Jette; Lantz, Anna Eliasson.

    In: New Biotechnology, Vol. 29S, 2012, p. S50.

    Publication: Research - peer-review › Conference abstract in journal – Annual report year: 2012

  46. Published

    Establishing new microbial cell factories for sustainable bioprocesses. / Workman, Mhairi; Holt, Philippe; Liu, Xiaoying .

    In: New Biotechnology, Vol. 29S, 2012, p. S75.

    Publication: Research - peer-review › Conference abstract in journal – Annual report year: 2012

  47. Published

    Evaluation of cell factory performance through determination of intracellular metabolites using LC-MS/MS. / Magdenoska, Olivera; Martinussen, Jan; Nielsen, Kristian Fog; Thykær, Jette.

    In: New Biotechnology, Vol. 29S, 2012.

    Publication: Research - peer-review › Conference abstract in journal – Annual report year: 2012

  48. Published

    Experimental poisoning by Baccharis megapotamica var. weirii in buffalo. / Oliveira-Filho, José C.; Carmo, Priscila M.S.; Iversen, Anita; Nielsen, Kristian Fog; Barros, Claudio S. L.

    In: Pesquisa Veterinaria Brasileira, Vol. 32, No. 5, 2012, p. 383-390.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  49. Published

    Food as a Source for Quorum Sensing Inhibitors: Iberin from Horseradish Revealed as a Quorum Sensing Inhibitor of Pseudomonas aeruginosa. / Jakobsen, Tim Holm; Bragason, Steinn Kristinn; Phipps, Richard Kerry; Christensen, Louise Dahl; van Gennip, Maria; Alhede, Morten; Skindersoe, Mette; Larsen, Thomas Ostenfeld; Høiby, Niels; Bjarnsholt, Thomas; Givskov, Michael.

    In: Applied and Environmental Microbiology, Vol. 78, No. 7, 2012, p. 2410-2421.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  50. Published

    Food fermentations: Microorganisms with technological beneficial use. / Bourdichon, François; Casaregola, Serge; Farrokh, Choreh; Frisvad, Jens Christian; Gerds, Monica L.; Hammes, Walter P.; Harnett, James; Huys, Geert; Laulund, Svend; Ouwehand, Arthur; Powell, Ian B.; Prajapati, Jashbhai B.; Seto, Yasuyuki; Ter Schure, Eelko; Van Boven, Aart; Vankerckhoven, Vanessa; Zgoda, Annabelle; Tuijtelaars, Sandra; Hansen, Egon Bech.

    In: International Journal of Food Microbiology, Vol. 154, No. 3, 2012, p. 87-97.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

  51. Published

    Fungal natural products targeting chronic lymphocytic leukemia. / Bladt, Tanja Thorskov; Kildgaard, Sara; Knudsen, Peter Boldsen; Gotfredsen, Charlotte Held; Duerr, C.; Seiffert, M.; Larsen, Thomas Ostenfeld.

    In: Planta Medica, Vol. 78, No. 11, 2012, p. 1158-1158.

    Publication: Research - peer-review › Conference abstract in journal – Annual report year: 2012

  52. Published

    Fungal Origins of the Bicyclo[2.2.2]diazaoctane Ring System of Prenylated Indole Alkaloids. / Finefield, Jennifer M.; Frisvad, Jens C.; Sherman, David H.; Williams, Robert M.

    In: Journal of Natural Products, Vol. 75, No. 4, 2012, p. 812-833.

    Publication: Research - peer-review › Journal article – Annual report year: 2012

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