Center for Biological Sequence Analysis

  1. 2015
  2. E-pub ahead of print

    Acquisition of docetaxel resistance in breast cancer cells reveals upregulation of ABCB1 expression as a key mediator of resistance accompanied by discrete upregulation of other specific genes and pathways.. / Ninel Hansen, Stine; Westergaard, David ; Borg Houlberg Thomsen, Mathilde; Vistesen, Mette; Nguyen Do, Khoa; Fogh, Louise; Belling, Kirstine C.; Wang, Jun; Yang, Huanming; Gupta, Ramneek; Ditzel, Henrik Jørn; Moreira, José ; Brünner, Nils; Stenvang, Jan; Schrohl, Anne-Sofie.

    In: Tumor Biology, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  3. Accepted/In press

    Acylcarnitine plasma levels suggest incomplete mitochondrial fatty acid oxidation in young, healthy men with low birth weight. / Ribel-Madsen, Amalie; Ribel-Madsen, Rasmus; Brøns, Charlotte; B. Newgard, Christopher; Vaag, Allan; Hellgren, Lars.

    2015. Abstract from 28th Nordic Lipid Symposium, Reykjavik, Iceland.

    Publication: Research - peer-reviewConference abstract for conference – Annual report year: 2015

  4. Published

    Airway Mucosal Immune-suppression in Neonates of Mothers Receiving A(H1N1)pnd09 Vaccination During Pregnancy. / Pedersen, Susanne Brix; Bischoff, Anne L.; Folsgaard, Nilofar V.; Vissing, Nadja H.; Birch, Sune; Bisgaard, Hans .

    In: Pediatric Infectious Disease Journal, Vol. 34, No. 1, 2015, p. 84-90.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  5. Published

    AllelicImbalance: An R/ bioconductor package for detecting, managing, and visualizing allele expression imbalance data from RNA sequencing. / Gådin, Jesper R.; van't Hooft, Ferdinand M.; Eriksson, Per; Folkersen, Lasse.

    In: BMC Bioinformatics, Vol. 16, No. 1, 2015, p. 194.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  6. E-pub ahead of print

    A proteomic study of the regulatory role for STAT-1 in cytokine-induced beta-cell death. / Rondas, Dieter; Gudmundsdottir, Valborg; D’Hertog, Wannes; Crèvecoeur, Inne; Waelkens, Etienne; Brunak, Søren; Mathieu, Chantal; Overbergh, Lut.

    In: Proteomics - Clinical Applications, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  7. Published

    Archival Bone Marrow Samples: Suitable for Multiple Biomarker Analysis?. / Lund, Bendik; Najmi, A. Laeya; Wesolowska, Agata; Landsem, Veslemoy M.; Rasmussen, Kirsten K.; Borst, Louise; Gupta, Ramneek; Schmiegelow, Kjeld; Klungland, Helge.

    In: Applied Immunohistochemistry & Molecular Morphology, Vol. 23, No. 1, 2015, p. 71-77.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  8. Published
  9. Published

    Automated benchmarking of peptide-MHC class I binding predictions. / Trolle, Thomas; Metushi, Imir G.; Greenbaum, Jason; Kim, Yohan; Sidney, John; Lund, Ole; Sette, Alessandro; Peters, Bjoern; Nielsen, Morten.

    In: Bioinformatics, Vol. 31, No. 13, 2015, p. 2174-2181.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  10. Published

    Bioinformatics prediction of swine MHC class I epitopes from Porcine Reproductive and Respiratory Syndrome Virus. / Welner, Simon; Nielsen, Morten; Lund, Ole; Jungersen, Gregers; Larsen, Lars Erik.

    2015. Abstract from Keystone Symposia on Molecular and Cellular Biology: Accelerating life science discovery, Keystone, United States.

    Publication: Research - peer-reviewConference abstract for conference – Annual report year: 2015

  11. Published
  12. Published

    Clonal status of actionable driver events and the timing of mutational processes in cancer evolution. / McGranahan, Nicholas; Favero, Francesco; de Bruin, Elza C.; Birkbak, Nicolai Juul; Szallasi, Zoltan Imre; Swanton, Charles.

    In: Science Translational Medicine, Vol. 7, No. 283, 283ra54, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  13. Published

    Defining the microbial effluxome in the content of the host-microbiome interaction. / Ioannidis, Anastasios; Magana, Maria; Bologa, Cristian G.; Oprea, Tudor I.; Paulsen, Ian T.; Tegos, George P.

    In: Frontiers in Pharmacology, Vol. 6, 31, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  14. Published

    Developing a Molecular Roadmap of Drug-Food Interactions. / Jensen, Kasper; Ni, Yueqiong; Panagiotou, Gianni; Kouskoumvekaki, Irene.

    In: P L o S Computational Biology (Online), Vol. 11, No. 2, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  15. Published

    Distinct summer and winter bacterial communities in the active layer of Svalbard permafrost revealed by DNA- and RNA-based analyses. / Schostag, Morten; Stibal, Marek; Jacobsen, Carsten S.; Bælum, Jacob; Tas, Neslihan; Elberling, Bo; Jansson, Janet K.; Semenchuk, Philipp; Prieme, Anders.

    In: Frontiers in Microbiology, Vol. 6, 399, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  16. Published

    Establishment and characterization of models of chemotherapy resistance in colorectal cancer: Towards a predictive signature of chemoresistance. / Jensen, Niels F.; Stenvang, Jan; Beck, Mette Kristina; Hanáková, Barbora; Belling, Kirstine C.; Nguyen Do, Khoa; Viuff, Birgitte; Nygård, Sune B.; Gupta, Ramneek; Rasmussen, Mads H.; Tarpgaard, Line S.; Hansen, Tine P.; Budinská, Eva; Pfeiffer, Per; Bosman, Fred; Tejpar, Sabine; Roth, Arnaud; Delorenzi, Mauro; Andersen, Claus L.; Rømer, Maria U.; Brünner, Nils; Moreira, José M.A.

    In: Molecular Oncology, Vol. 9, No. 6, 2015, p. 1169-1185.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  17. Published

    Evidence of interactions between aroma compounds and the CB1 receptor opens new routes for regulation of food intake. / Le Bon, Anne-Marie; Audouze, Karine Marie Laure; Taboureau, Olivier ; Burton, Kathryn; Belloir, Christine; Desmetz, Catherine; Brunak, Søren; Guichard, Elisabeth; Tromelin, Anne.

    In: Chemical Senses, Vol. 40, No. 3, 2015, p. 280-280.

    Publication: Research - peer-reviewConference abstract in journal – Annual report year: 2015

  18. E-pub ahead of print
  19. Accepted/In press

    FluKB: A Knowledge-Based System for Influenza Vaccine Target Discovery and Analysis of the Immunological Properties of Influenza Viruses. / Simon, Christian; Kudahl, Ulrich Johan; Sun, Jing; Olsen, Lars Rønn; Zhang, Guang Lan; Reinherz, Ellis L.; Brusic, Vladimir.

    In: Journal of Immunology Research, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  20. Published

    Gene expression analysis identifies global gene dosage sensitivity in cancer. / Fehrmann, Rudolf S. N.; Karjalainen, Juha M.; Krajewska, Malgorzata; Westra, Harm-Jan; Maloney, David; Simeonov, Anton; Pers, Tune Hannes; Hirschhorn, Joel N.; Jansen, Ritsert C.; Schultes, Erik A.; van Haagenl, Herman H. H. B. M.; de Vries, Elisabeth G. E.; Meerman, Gerard J. te; Wijmenga, Cisca; van Vugt, Marcel A. T. M.; Franke, Lude.

    In: Nature Genetics, Vol. 47, No. 2, 2015, p. 115-125.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  21. Published

    Genomic Dissection of Travel-Associated Extended-Spectrum-Beta-Lactamase-Producing Salmonella enterica Serovar Typhi Isolates Originating from the Philippines: a One-Off Occurrence or a Threat to Effective Treatment of Typhoid Fever?. / Hendriksen, Rene S.; Leekitcharoenphon, Pimlapas; Mikoleit, Matthew; Jensen, Jacob Dyring; Kaas, Rolf Sommer; Roer, Louise; Joshi, Heena B.; Pornruangmong, Srirat; Pulsrikarn, Chaiwat; Gonzalez-Aviles, Gladys D.; Reuland, E. Ascelijn; Al Naiemi, Nashwan; Wester, Astrid Louise; Aarestrup, Frank Møller; Hasman, Henrik.

    In: Journal of Clinical Microbiology, Vol. 53, No. 2, 2015, p. 677-680.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  22. Published

    Genomic profiling of thousands of candidate polymorphisms predicts risk of relapse in 778 Danish and German childhood acute lymphoblastic leukemia patients. / Wesolowska, Agata; Borst, L.; Dalgaard, Marlene Danner; Yadav, Rachita; Rasmussen, K. K. ; Wehner, Peder Skov; Rasmussen, M.; Ørntoft, T.F.; Nordentoft, I.; Koehler, R.; Sicheritz-Pontén, Thomas; Gautier, Laurent; Brunak, Søren; Gupta, Ramneek.

    In: Leukemia, Vol. 29, 2015, p. 297-303.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  23. Published

    Genomic Signature of Multidrug-Resistant Salmonella enterica Serovar Typhi Isolates Related to a Massive Outbreak in Zambia between 2010 and 2012.. / Hendriksen, Rene S.; Leekitcharoenphon, Pimlapas; Lukjancenko, Oksana; Lukwesa-Musyani, Chileshe; Tambatamba, Bushimbwa; Mwaba, John; Kalonda, Annie; Nakazwe, Ruth; Kwenda, Geoffrey; Jensen, Jacob Dyring; Svendsen, Christina Aaby; Dittmann, Karen K.; Kaas, Rolf Sommer; Cavaco, Lina; Aarestrup, Frank Møller; Hasman, Henrik; Mwansa, James C. L.

    In: Journal of Clinical Microbiology, Vol. 53, No. 1, 2015, p. 262-272.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  24. Published

    Gliadin affects glucose homeostasis and intestinal metagenome in C57BL6 mice fed a high-fat diet. / Zhang, Li; Hansen, Axel Kornerup; Bahl, Martin Iain; Hansen, Camilla Hartmann Friis; Andersen, Daniel; Pedersen, Susanne Brix; Hellgren, Lars; Licht, Tine Rask.

    2015. Abstract from Keystone Symposia - Gut Microbiota Modulation of Host Physiology: The Search for Mechanism, Keystone, Colorado, United States.

    Publication: Research - peer-reviewConference abstract for conference – Annual report year: 2015

  25. Published

    Glioblastoma adaptation traced through decline of an IDH1 clonal driver and macro-evolution of a double-minute chromosome. / Favero, Francesco; McGranahan, N.; Salm, M.; Birkbak, Nicolai Juul; Sanborn, J. Z.; Benz, S. C.; Becq, J.; Peden, J. F.; Kingsbury, Z.; Grocok, R. J.; Eklund, Aron Charles; Szallasi, Zoltan Imre.

    In: Annals of Oncology, Vol. 26, No. 5, 2015, p. 880-887.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  26. Published

    Glioblastoma adaptation traced through decline of an IDH1 clonal driver and macroevolution of a double minute chromosome.. / Favero, Francesco; McGranahan, Nicholas; Salm, Maximilian P.; Birkbak, Nicolai Juul; Sanborn, J. Zachary ; Benz, Stephen C. ; Becq, Jennifer; Peden, John F. ; Kingsbury, Zoya ; Grocok, Russell J. ; Eklund, Aron Charles.

    In: Annals of Oncology, Vol. 26, No. 5, 2015, p. 880-887.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  27. Published

    Global gene expression profiling of brown to white adipose tissue transformation in sheep reveals novel transcriptional components linked to adipose remodeling. / Basse, Astrid L.; Dixen, Karen; Yadav, Rachita; Tygesen, Malin P.; Qvortrup, Klaus; Kristiansen, Karsten; Quistorff, Bjorn; Gupta, Ramneek; Wang, Jun; Hansen, Jacob B.

    In: B M C Genomics, Vol. 16, No. 215, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  28. Published

    Hand eczema and stratum corneum ceramides. / Jungersted, J. M.; Høgh, Julie Kaae; Hellgren, Lars; Wilkinson, S.; Jemec, G. B. E.; Agner, T.

    In: Clinical and Experimental Dermatology, Vol. 40, No. 3, 2015, p. 243-246.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  29. Published

    Identification of novel immune and barrier genes in atopic dermatitis by means of laser capture microdissection. / Esaki, Hitokazu; Ewald, David Adrian; Ungar, Benjamin; Rozenblit, Mariya; Zheng, Xiuzhong; Xu, Hui; Estrada, Yeriel D.; Peng, Xiangyu; Mitsui, Hiroshi; Litman, Thomas; Suarez-Farinas, Mayte; Krueger, James G.; Guttman-Yassky, Emma.

    In: Journal of Allergy and Clinical Immunology, Vol. 135, No. 1, 2015, p. 153-163.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  30. Published

    Identification of possible adverse drug reactions in clinical notes : The case of glucose-lowering medicines. / Warrer, Pernille; Jensen, Peter Bjødstrup; Aagaard, Lise; Jensen, Lars Juhl; Brunak, Søren; Krag, Malene Hammer; Rossing, Peter; Almdal, Thomas; Andersen, Henrik Ullits; Hansen, Ebba Holme.

    In: Journal of Research in Pharmacy Practice, Vol. 4, No. 2, 2015, p. 64-72.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  31. Published

    Individualization of treatments with drugs metabolized by CES1 : combining genetics and metabolomics. / Rasmussen, Henrik B.; Bjerre, Ditte; Linnet, Kristian; Juergens, Gesche; Dalhoff, Kim; Stefansson, Hreinn; Hankemeier, Thomas; Kaddurah-Daouk, Rima; Taboureau, Olivier ; Brunak, Søren; Houmann, Tine; Jeppesen, Pia; Pagsberg, Anne Katrine; Plessen, Kerstin; Dyrborg, Jorgen; Hansen, Peter R.; Hansen, Poul Erik; Hughes, Tim; Werge, Thomas.

    In: Pharmacogenomics, Vol. 16, No. 6, 2015, p. 649-665.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  32. Published

    Insights from 20 years of bacterial genome sequencing. / Land, Miriam; Hauser, Loren; Jun, Se-Ran; Nookaew, Intawat; Leuze, Michael R.; Ahn, Tae-Hyuk; Karpinets, Tatiana; Lund, Ole; Kora, Guruprased; Wassenaar, Trudy; Poudel, Suresh; Ussery, David.

    In: Functional & Integrative Genomics, Vol. 15, No. 2, 2015, p. 141-161.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  33. Published

    Integrative analysis of kinase networks in TRAIL-induced apoptosis provides a source of potential targets for combination therapy. / So, Jonathan; Pasculescu, Adrian; Dai, Anna Y.; Williton, Kelly; James, Andrew; Nguyen, Vivian; Creixell, Pau; Schoof, Erwin M.; Sinclair, John; Barrios-Rodiles, Miriam; Gu, Jun; Krizus, Aldis; Williams, Ryan; Olhovsky, Marina; Dennis, James W.; Wrana, Jeffrey L.; Linding, Rune; Jørgensen, Claus; Pawson, Tony; Colwill, Karen.

    In: Science Signaling, Vol. 8, No. 371, rs3, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  34. Published

    Lactococcus lactis Thioredoxin Reductase Is Sensitive to Light Inactivation. / Björnberg, Olof; Viennet, Thibault; Skjoldager, Nicklas; Curovic, Aida; Nielsen, Kristian Fog; Svensson, Birte; Hagglund, P.

    In: Biochemistry, Vol. 54, No. 8, 2015, p. 1628-1637.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  35. E-pub ahead of print
  36. E-pub ahead of print

    LYRA, a webserver for lymphocyte receptor structural modeling.. / Schantz Klausen, Michael; Anderson, Mads Valdemar; Jespersen, Martin Closter; Nielsen, Morten; Marcatili, Paolo.

    In: Nucleic Acids Research, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  37. Published

    Metagenomic heterogeneity explains dual immune effects of endotoxins. / Pedersen, Susanne Brix; Eriksen, Carsten; Larsen, Jeppe Madura; Bisgaard, Hans Flinker.

    In: Journal of Allergy and Clinical Immunology, Vol. 135, No. 1, 2015, p. 277-280.

    Publication: Research - peer-reviewComment/debate – Annual report year: 2015

  38. Published

    Microbial Biofilm as a Smart Material. / Garde, Christian; Welch, Martin; Ferkinghoff-Borg, Jesper; Sams, Thomas.

    In: Sensors, Vol. 15, No. 2, 2015, p. 4229-4241.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  39. Published

    miR-18b overexpression identifies mantle cell lymphoma patients with poor outcome and improves the MIPI-B prognosticator. / Husby, Simon; Ralfkiær, Ulrik Methner; Garde, Christian; Zandi, Roza; Ek, Sara; Kolstad, Arne; Jerkeman, Mats; Laurell, Anna; Räty, Riikka; Pedersen, Lone B.; Pedersen, Anja; Ehinger, Mats; Sundström, Christer; Karjalainen-Lindsberg, Marja-Liisa; Delabie, Jan; Clasen-Linde, Erik; Brown, Peter; Cowland, Jack B.; Workman, Christopher; Geisler, Christian H.; Grønbæk, Kirsten.

    In: Blood, Vol. 125, No. 17, 2015, p. 2669-2677.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  40. Published

    Molecular Analysis of Asymptomatic Bacteriuria Escherichia coli Strain VR50 Reveals Adaptation to the Urinary Tract by Gene Acquisition. / Beatson, Scott A.; Ben Zakour, Nouri L.; Totsika, Makrina; Forde, Brian M.; Watts, Rebecca E.; Mabbett, Amanda N.; Szubert, Jan M.; Sarkar, Sohinee; Phan, Minh-Duy; Peters, Kate M.; Petty, Nicola K.; Alikhan, Nabil-Fareed; Sullivan, Mitchell J.; Gawthorne, Jayde A.; Stanton-Cook, Mitchell; Nhu, Nguyen Thi Khanh; Chong, Teik Min; Yin, Wai-Fong; Chan, Kok-Gan; Hancock, Viktoria ; Ussery, David W.; Ulett, Glen C.; Schembri, Mark A.

    In: Infection and Immunity, Vol. 83, No. 5, 2015, p. 1749-1764.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  41. Published

    Multilocus Heterozygosity and Coronary Heart Disease: Nested Case-Control Studies in Men and Women. / Mukamal, Kenneth J.; Jensen, Majken K.; Pers, Tune Hannes; Pai, Jennifer K.; Kraft, Peter; Rimm, Eric B.

    In: PLOS ONE, Vol. 10, No. 5, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  42. Accepted/In press
  43. Published

    Multi-omic profiling of EPO-producing CHO cell panel reveals metabolic adaptation to heterologous protein production. / Ley, Daniel; Kazemi Seresht, Ali; Engmark, Mikael; Magdenoska, Olivera; Nielsen, Kristian Fog; Kildegaard, Helene Faustrup; Andersen, Mikael Rørdam.

    2015. Poster session presented at 24th ESACT meeting, Barcelona, Spain.

    Publication: Research - peer-reviewPoster – Annual report year: 2015

  44. Published

    Neonates with reduced neonatal lung function have systemic low-grade inflammation. / Chawes, Bo L.K.; Stokholm, Jakob; Bønnelykke, Klaus; Pedersen, Susanne Brix; Bisgaard, Hans Flinker.

    In: Journal of Allergy and Clinical Immunology, Vol. 135, No. 6, 2015, p. 1450-1456.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  45. Published

    Novel variation and de novo mutation rates in population-wide de novo assembled Danish trios. / Besenbacher, Søren; Liu, Siyang; Gonzalez-Izarzugaza, Jose Maria; Grove, Jakob; Belling, Kirstine C.; Bork-Jensen, Jette; Huang, Shujia; Dam-Als, Thomas; Li, Shengting; Yadav, Rachita; Yadav, Rachita; Rubio García, Arcadio; Lescai, Francesco; Demontis, Ditte ; Rao, Junhua ; Ye, Weijian ; Mailund, Thomas; Friborg, Rune M. ; Pedersen, Christian N. S.; Xu, Ruiqi; Sun, Jihua; Liu, Hao ; Wang, Ou ; Cheng, Xiaofang ; Flores Santa Cruz, David; Rydza, Emil Karol; Rapacki, Kristoffer; Sørensen, John Damm; Chmura, Piotr Jaroslaw; Westergaard, David; Dworzynski, Piotr; Sørensen, Thorkild I. A.; Lund, Ole; Hansen, Torben; Xu, Xun; Li, Ning; Bolund, Lars; Pedersen, Oluf; Eiberg, Hans; Krogh, Anders; Børglum, Anders D.; Brunak, Søren; Kristiansen, Karsten; Schierup, Mikkel H; Jun, Wang; Gupta, Ramneek; Villesen, Palle ; Rasmussen, Simon.

    In: Nature Communications, Vol. 6, 5969, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  46. Published

    Pan-Genome Analysis of Human Gastric Pathogen H. pylori: Comparative Genomics and Pathogenomics Approaches to Identify Regions Associated with Pathogenicity and Prediction of Potential Core Therapeutic Targets. / Ali, Amjad; Naz, Anam; Soares, Siomar C.; Bakhtiar, Marriam; Tiwari, Sandeep; Hassan, Syed S.; Hanan, Fazal; Ramos, Rommel; Pereira, Ulisses; Barh, Debmalya; Pereira Figueiredo, Henrique Cesar; Ussery, David; Miyoshi, Anderson; Silva, Artur; Azevedo, Vasco.

    In: Journal of Biomedicine and Biotechnology, Vol. 2015, 139580, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  47. Published
  48. Published

    Reduced ex vivo stimulated IL-6 response in infants randomized to fish oil from 9 to 18 months, especially among PPARG2 and COX2 wild types. / Harslof, Laurine B. S.; Damsgaard, Camilla T.; Andersen, Anders D.; Aakjaer, Ditte L.; Michaelsen, Kim F.; Hellgren, Lars I.; Frøkiær, Hanne; Vogel, Ulla; Lauritzen, Lotte.

    In: Prostaglandins, Leukotrienes & Essential Fatty Acids, Vol. 94, 2015, p. 21-27.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  49. Published

    Relationship of postoperative thrombocytosis and survival of patients with colorectal cancer. / Josa, Valeria; Krzystanek, Marcin; Eklund, Aron Charles; Salamon, Ferenc; Zarand, Attila; Szallasi, Zoltan Imre; Baranyai, Zsolt.

    In: International Journal of Surgery, Vol. 18, 2015, p. 1-6.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  50. Published

    Renal impairment and late toxicity in germ-cell cancer survivors.. / Lauritsen, J.; Mortensen, M. S.; Kier, M. G. G.; Christensen, I. J.; Agerbaek, M.; Gupta, Ramneek; Daugaard, G.

    In: Annals of Oncology, Vol. 26, No. 1, 2015, p. 173-178.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  51. Published

    RNA sequencing atopic dermatitis transcriptome profiling provides insights into novel disease mechanisms with potential therapeutic implications. / Suárez-Fariñas, Mayte; Ungar, Benjamin; Correa da Rosa, Joel; Ewald, David Adrian; Rozenblit, Mariya; Gonzalez, Juana; Xu, Hui; Zheng, Xiuzhong; Peng, Xiangyu; Estrada, Yeriel D.; Dillon, Stacey ; Krueger, James G.; Guttman-Yassky, Emma.

    In: Journal of Allergy and Clinical Immunology, Vol. 135, No. 5, 2015, p. 1218-1227.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  52. Published
  53. Published

    Serological assessment of neutrophil elastase activity on elastin during lung ECM remodeling. / Kristensen, Jacob Hull; Karsdal, Morten A.; Sand, Jannie M. B.; Willumsen, Nicholas; Diefenbach, Claudia; Svensson, Birte; Hägglund, Per; Oersnes-Leeming, Diana J.

    In: BMC Pulmonary Medicine, Vol. 15, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  54. Published

    SNPsnap: a Web-based tool for identification and annotation of matched SNPs. / Pers, Tune Hannes; Timshel, Pascal; Hirschhorn, Joel N.

    In: Bioinformatics, Vol. 31, No. 3, 2015, p. 418-420.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  55. Published

    Somatic Cell Fusions Reveal Extensive Heterogeneity in Basal-like Breast Cancer. / Su, Ying; Subedee, Ashim; Bloushtain-Qimron, Noga; Savova, Virginia; Krzystanek, Marcin; Li, Lewyn; Marusyk, Andriy; Tabassum, Doris P.; Zak, Alexander; Szallasi, Zoltan Imre.

    In: Cell Reports, Vol. 11, No. 10, 2015, p. 1549-1563.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  56. Published

    Structural Conservation Despite Huge Sequence Diversity Allows EPCR Binding by the PfEMP1 Family Implicated in Severe Childhood Malaria. / Lau, Clinton K.Y.; Turner, Louise; Jespersen, Jakob S.; Lowe, Edward D. ; Petersen, Bent; Wang, Christian W.; Petersen, Jens E.V.; Lusingu, John; Theander, Thor G.; Lavstsen, Thomas; Higgins, Matthew K.

    In: Cell Host & Microbe, Vol. 17, 2015, p. 118-129.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  57. Published

    Tabhu: tools for antibody humanization.. / Olimpieri, Pier Paolo; Marcatili, Paolo; Tramontano, Anna.

    In: Bioinformatics, Vol. 31, No. 3, 2015, p. 434-435.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  58. Published

    The potential role of Alu Y in the development of resistance to SN38 (Irinotecan) or oxaliplatin in colorectal cancer. / Lin, Xue; Stenvang, Jan; Rasmussen, Mads Heilskov; Zhu, Shida; Jensen, Niels Frank; Tarpgaard, Line S.; Yang, Guangxia; Belling, Kirstine C.; Andersen, Claus Lindbjerg; Li, Jian; Bolund, Lars; Brunner, Nils.

    In: B M C Genomics, Vol. 16, No. 404, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  59. Published

    Traces of ATCV-1 associated with laboratory component contamination. / Kjartansdóttir, Kristín Rós ; Friis-Nielsen, Jens; Asplund, Maria ; Mollerup, Sarah ; Mourier, Tobias ; Holm Jensen, Randi ; Arn Hansen, Thomas; Rey-Iglesia, Alba ; Raith Richter, Stine ; Alquezar-Planas, David E. ; Olsen, Pernille V. S. ; Vinner, Lasse ; Fridholm, Helena ; Sicheritz-Pontén, Thomas; Nielsen, Lars Peter; Brunak, Søren; Willerslev, Eske; Gonzalez-Izarzugaza, Jose Maria; Hansen, Anders Johannes .

    In: National Academy of Sciences. Proceedings, Vol. 112, No. 9, 2015, p. E925–E926.

    Publication: Research - peer-reviewLetter – Annual report year: 2015

  60. Published

    Transcriptome and genome size analysis of the venus flytrap. / Jensen, Michael Krogh; Vogt, Josef Korbinian; Bressendorff, Simon; Seguin-Orlando, Andaine; Petersen, Morten; Sicheritz-Pontén, Thomas; Mundy, John.

    In: P L o S One, Vol. 10, No. 4, e0123887, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  61. Published

    Transcriptome profiling of brown adipose tissue during cold exposure reveals extensive regulation of glucose metabolism. / Hao, Qin; Yadav, Rachita; Basse, Astrid L.; Petersen, Sidsel ; Sonne, Si B.; Rasmussen, Simon; Zhu, Qianhua; Lu, Zhike; Wang, Jun; Audouze, Karine Marie Laure; Gupta, Ramneek; Madsen, Lise; Kristiansen, Karsten; Hansen, Jacob B.

    In: American Journal of Physiology: Endocrinology and Metabolism, Vol. 308, No. 5, 2015, p. E380-E392.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  62. Published

    Two Lactococcus lactis thioredoxin paralogues play different roles in responses to arsenate and oxidative stress. / Efler, Petr; Kilstrup, Mogens; Johnsen, Stig; Svensson, Birte; Hägglund, Per.

    In: Microbiology, Vol. 161, No. Pt 3, 2015, p. 528-538.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  63. Published

    Whey-reduced weight gain is associated with a temporary growth reduction in young mice fed a high-fat diet. / Tranberg, Britt; Madsen, Andreas N.; Hansen, Axel K.; Hellgren, Lars.

    In: Journal of Nutritional Biochemistry, Vol. 26, No. 1, 2015, p. 9–15.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  64. 2014
  65. Published
  66. Published

    Acute and perinatal-programming effects of a fat-rich diet on rat muscle mitochondrial function and hepatic lipid accumulation.. / Hellgren, Lars; Jensen, Runa I.; Waterstradt, Michelle S. G. ; Quistorff, Bjørn; Lauritzen, Lotte.

    In: Acta Obstetricia et Gynecologica Scandinavica, Vol. 93, 2014, p. 1170-1180.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  67. Published

    Adipose tissue trans fatty acids and changes in body weight and waist circumference. / Hansen, Camilla P.; Berentzen, Tina L.; Østergaard, Jane N.; Dahm, Christina C.; Hellgren, Lars; Schmidt, Erik B.; Tjønneland, Anne; Sørensen, Thorkild I. A.; Overvad, Kim; Jakobsen, Marianne U.

    In: The British Journal of Nutrition, Vol. 111, No. 7, 2014, p. 1283-1291.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  68. Published

    A DNA-binding-site landscape and regulatory network analysis for NAC transcription factors in Arabidopsis thaliana.. / Lindemose, Søren; Jensen, Michael Krogh; de Velde, Jan Van; O'Shea, Charlotte; Heyndrickx, Ken S.; Workman, Christopher; Vandepoele, Klaas; Skriver, Karen; De Masi, Federico.

    In: Nucleic Acids Research, Vol. 42, No. 12, 2014, p. 7681-7693.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  69. Published

    Ageing of atrazine in manure amended soils assessed by bioavailability to Pseudomonas sp. strain ADP. / Glæsner, Nadia; Bælum, Jacob; Strobel, Bjarne W.; Jacobsen, Carsten S.

    In: Biodegradation, Vol. 25, No. 2, 2014, p. 217-225.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  70. Published

    A Generally Applicable Translational Strategy Identifies S100A4 as a Candidate Gene in Allergy. / Bruhn, Sören; Fang, Yu; Barrenäs, Fredrik; Gustafsson, Mika; Zhang, Huan; Konstantinell, Aelita; Krönke, Andrea; Sönnichsen, Birte; Bresnick, Anne; Dulyaninova, Natalya; Wang, Hui; Zhao, Yelin; Klingelhöfer, Jörg; Ambartsumian, Noona; Beck, Mette Kristina; Nestor, Colm; Bona, Elsa; Xiang, Zou; Benson, Mikael.

    In: Science Translational Medicine, Vol. 6, No. 218, 2014, p. 20218ra4-218ra4.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  71. Published

    A genome-wide association study identifies CDHR3 as a susceptibility locus for early childhood asthma with severe exacerbations.. / Bønnelykke, Klaus; Sleiman, Patrick; Nielsen, Kasper; Kreiner-Møller, Eskil; Mercader, Josep M; Belgrave, Danielle; den Dekker, Herman T; Husby, Anders; Sevelsted, Astrid; Faura-Tellez, Grissel; Mortensen, Li Juel; Paternoster, Lavinia; Flaaten, Richard; Mølgaard, Anne; Smart, David E; Thomsen, Philip Francis; Rasmussen, Morten; Bonàs-Guarch, Silvia; Holst, Claus; Nohr, Ellen A; Yadav, Rachita; March, Michael E; Blicher, Thomas Holberg; Lackie, Peter M; Jaddoe, Vincent W V; Simpson, Angela; Holloway, John W; Duijts, Liesbeth; Custovic, Adnan; Davies, Donna E; Torrents, David; Gupta, Ramneek; Hollegaard, Mads Vilhelm; Hougaard, David M; Hakonarson, Hakon; Bisgaard, Hans Flinker.

    In: Nature Genetics, Vol. 46, 2014, p. 51-55.

    Publication: Research - peer-reviewLetter – Annual report year: 2013

  72. Published
  73. Published

    An elevated pro-inflammatory cytokine profile in multiple chemical sensitivity. / Dantoft, Thomas Meinertz; Elberling, J.; Pedersen, Susanne Brix; Szecsi, P.B.; Vesterhauge, S.; Skovbjerg, S.

    In: Psychoneuroendocrinology, Vol. 40, 2014, p. 140-150.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  74. Published

    An integrated catalog of reference genes in the human gut microbiome. / Li, Junhua; Jia, Huijue; Cai, Xianghang; Zhong, Huanzi; Feng, Qiang; Sunagawa, Shinichi; Arumugam, Manimozhiyan; Kultima, Jens Roat; Prifti, Edi; Nielsen, Trine; Juncker, Agnieszka; Nielsen, Henrik Bjørn; Brunak, Søren.

    In: Nature Biotechnology, Vol. 32, No. 8, 2014, p. 834-841.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  75. Published

    An international effort towards developing standards for best practices in analysis, interpretation and reporting of clinical genome sequencing results in the CLARITY Challenge. / Brownstein, Catherine A ; Beggs, Alan H ; Homer, Nils ; Merriman, Barry ; Yu, Timothy W; Flannery, Katherine C ; DeChene, Elizabeth T ; Towne, Meghan C ; Savage, Sarah K ; Price, Emily N ; Dworzynski, Piotr.

    In: Genome Biology (Online Edition), Vol. 15, R53, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  76. Published

    Annotation of loci from genome-wide association studies using tissue-specific quantitative interaction proteomics. / Lundby, Alicia; Rossin, Elizabeth J.; Steffensen, Annette B.; Acha, Moshe Ray; Newton-Cheh, Christopher; Pfeufer, Arne; Lyneh, Stacey N.; Olesen, Søren-Peter; Brunak, Søren; Ellinor, Patrick T.; Jukema, J. Wouter; Trompet, Stella; Ford, Ian; Macfarlane, Peter W.; Krijthe, Bouwe P.; Hofman, Albert; Uitterlinden, Andre G.; Stricker, Bruno H.; Nathoe, Hendrik M.; Spiering, Wilko; Daly, Mark J.; Asselbergs, Folkert W.; van der Harst, Pim; Milan, David J.; de Bakker, Paul I. W.; Lage, Kasper; Olsen, Jesper V.

    In: Nature Methods, Vol. 11, No. 8, 2014, p. 868-874.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  77. Published
  78. Published

    Antibody informatics for drug discovery. / Shirai, Hiroki; Prades, Catherine; Vita, Randi; Marcatili, Paolo; Popovic, Bojana; Xu, Jianqing; Overington, John P.; Hirayama, Kazunori; Soga, Shinji; Tsunoyama, Kazuhisa; Clark, Dominic; Lefranc, Marie-Paule; Ikeda, Kazuyoshi.

    In: B B A - Proteins and Proteomics, Vol. 1844, No. 11, 2014, p. 2002-2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  79. Published

    Antibody structural modeling with prediction of immunoglobulin structure (PIGS).. / Marcatili, Paolo; Olimpieri, Pier Paolo; Chailyan, Anna; Tramontano, Anna.

    In: Nature Protocols, Vol. 9, No. 12, 2014, p. 2771-2783.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  80. Published

    A pan-cancer analysis of inferred homologous recombination deficiency identifies potential platinum benefit in novel subtypes. / Marquard, Andrea Marion; Eklund, Aron Charles; Wang, Zhigang C.; Richardson, Andrea L.; Szallasi, Zoltan Imre; Birkbak, Nicolai Juul.

    In: Cancer Research, Vol. 74, No. 19 - Supplement, 2822, 2014.

    Publication: Research - peer-reviewConference abstract in journal – Annual report year: 2015

  81. Published
  82. Published
  83. Published

    A random set scoring model for prioritization of disease candidate genes using protein complexes and data-mining of GeneRIF, OMIM and PubMed records.. / Jiang, Li; Edwards, Stefan M.; Thomsen, Bo; Workman, Christopher; Guldbrandtsen, Bernt; Sørensen, Peter.

    In: BMC Bioinformatics, Vol. 15, No. 315, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  84. Published

    A Selective Sweep on a Deleterious Mutation in CPT1A in Arctic Populations. / Clemente, Florian J. ; Cardona, Alexia; Inchley, Charlotte E. ; Peter, Benjamin M. ; Jacobs, Guy; Pagani, Luca ; Lawson, Daniel J. ; Antão, Tiago ; Vicente, Mário ; Mitt, Mario ; Rasmussen, Simon.

    In: American Journal of Human Genetics, Vol. 95, No. 5, 2014, p. 584–589.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  85. Published
  86. Published

    Bacterial diversity in snow on North Pole ice floes. / Hauptmann, Aviaja Zenia Edna Lyberth; Stibal, Marek ; Bælum, Jacob; Sicheritz-Pontén, Thomas; Brunak, Søren; Bowman, Jeff S.; Hansen, Lars H. ; Jacobsen, Carsten S.; Blom, Nikolaj.

    In: Extremophiles, Vol. 18, 2014, p. 945-951.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  87. Published
  88. Published

    Biological insights from 108 schizophrenia-associated genetic loci. / Ripke, Stephan; Neale, Benjamin M.; Corvin, Aiden ; Walters, James T. R. ; Farh, Kai-How ; Holmans, Peter A. ; Lee, Phil ; Bulik-Sullivan, Brendan ; Collier, David A. ; Huang, Hailiang ; Pers, Tune Hannes; Agerbo, Esben ; Demontis, Ditte ; Hansen, Thomas; Hollegaard, Mads Vilhelm; Hougaard, David M.; Mors, Ole; Werge, Thomas.

    In: Nature, Vol. 511, 2014, p. 421-427.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  89. Published

    Cesarean section imprints cord blood immune cell distributions. / Thysen, Anna Hammerich; Larsen, Jeppe Madura; Rasmussen, Mette Annelie; Stokholm, J.; Bønnelykke, K.; Pedersen, Susanne Brix; Bisgaard, Hans Flinker.

    In: ALLERGY, Vol. 69, No. Supplement s99, 438, 2014, p. 192-192.

    Publication: Research - peer-reviewConference abstract in journal – Annual report year: 2014

  90. Published

    Characterisation of the Ara h 1-specific IgE repertoire in peanut allergic patients using phage display technology and next generation sequencing. / Christiansen, Anders; Bøgh, Katrine Lindholm; Kringelum, Jens Vindahl; Hansen, Christian Skjødt; Rigby, N. M.; Eiwegger, T.; Szepfalusi, Z.; Lund, Ole; Dufva, Martin.

    In: ALLERGY, Vol. 69, No. Supplement, 297, 2014, p. 140-140.

    Publication: Research - peer-reviewConference abstract in journal – Annual report year: 2014

  91. Published

    Characterization of binding specificities of bovine leucocyte class I molecules: impacts for rational epitope discovery.. / Hansen, Andreas M.; Rasmussen, Michael; Svitek, Nicholas; Harndahl, Mikkel; Golde, William T.; Barlow, John; Nene, Vishvanath; Buus, Søren; Nielsen, Morten.

    In: Immunogenetics, Vol. 66, No. 12, 2014, p. 705-718.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  92. Published

    Children developing asthma by school-age display aberrant immune responses to pathogenic airway bacteria as infants. / Larsen, Jeppe Madura; Pedersen, Susanne Brix; Thysen, Anna Hammerich; Birch, S.; Rasmussen, M.A.; Bisgaard, H.

    In: ALLERGY, Vol. 69, No. s99, 404, 2014, p. 179-179.

    Publication: Research - peer-reviewConference abstract in journal – Annual report year: 2014

  93. Published

    Children with asthma by school age display aberrant immune responses to pathogenic airway bacteria as infants. / Larsen, Jeppe Madura; Pedersen, Susanne Brix; Thysen, Anna Hammerich; Birch, Sune; Rasmussen, Morten Arendt; Bisgaard, Hans Flinker.

    In: Journal of Allergy and Clinical Immunology, Vol. 133, No. 4, 2014, p. 1008-1013.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  94. Published
  95. Published

    Cofactory: Sequence-based prediction of cofactor specificity of Rossmann folds. / Geertz-Hansen, Henrik Marcus; Blom, Nikolaj; Feist, Adam; Brunak, Søren; Petersen, Thomas Nordahl.

    In: Proteins, Vol. 82, No. 9, 2014, p. 1819-1828.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  96. Published
  97. Published

    Combining Experiments and Simulations Using the Maximum Entropy Principle. / Boomsma, Wouter; Ferkinghoff-Borg, Jesper; Lindorff-Larsen, Kresten.

    In: P L o S Computational Biology (Online), Vol. 10, No. 2, e1003406, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  98. Published

    Comparison of the Web Tools ARG-ANNOT and ResFinder for Detection of Resistance Genes in Bacteria. / Zankari, Ea.

    In: Antimicrobial Agents and Chemotherapy, Vol. 58, No. 8, 2014, p. 4986-4986.

    Publication: Research - peer-reviewLetter – Annual report year: 2014

  99. Published

    Compass: A hybrid method for clinical and biobank data mining. / Krysiak-Baltyn, Konrad; Petersen, Thomas Nordahl; Audouze, Karine Marie Laure; Jørgensen, Niels; Ängquist, L.; Brunak, Søren.

    In: Journal of Biomedical Informatics, Vol. 47, 2014, p. 160-170.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  100. Published

    Complete Genome Sequence of Border Disease Virus Genotype 3 Strain Gifhorn. / Fahnøe, Ulrik; Höper, Dirk ; Beer, Martin; Rasmussen, Thomas Bruun.

    In: Genome Announcements, Vol. 2, No. 1, e01142-13, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  101. Published

    Complete Genome Sequence of Classical Swine Fever Virus Genotype 2.2 Strain Bergen. / Fahnøe, Ulrik; Lohse, Louise; Becher, Paul ; Rasmussen, Thomas Bruun.

    In: Genome Announcements, Vol. 2, No. 3, 2014, p. e00483-14.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  102. Published

    Construction of a dairy microbial genome catalog opens new perspectives for the metagenomic analysis of dairy fermented products. / Almeida, Mathieu; Hebert, Agnes; Abraham, Anne-Laure; Rasmussen, Simon; Monnet, Christophe; Pons, Nicolas; Delbes, Celine; Loux, Valentin; Batto, Jean-Michel; Leonard, Pierre; Kennedy, Sean; Ehrlich, Stanislas Dusko; Pop, Mihai; Montel, Marie-Christine; Irlinger, Francoise; Renault, Pierre.

    In: B M C Genomics, Vol. 15, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  103. Published

    CoreFlow: A computational platform for integration, analysis and modeling of complex biological data. / Pasculescu, Adrian; Schoof, Erwin; Creixell, Pau; Zheng, Yong; Olhovsky, Marina; Tian, Ruijun; So, Jonathan; Vanderlaan, Rachel D.; Pawson, Tony; Linding, Rune; Colwill, Karen.

    In: Journal of Proteomics, Vol. 100, 2014, p. 167-173.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  104. Published

    Cyclebase 3.0: a multi-organism database on cell-cycle regulation and phenotypes. / Santos Delgado, Alberto; Wernersson, Rasmus; Jensen, Lars Juhl.

    In: Nucleic Acids Research, Vol. 43, No. D1, 2014, p. D1140-D1144.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  105. Published

    Database-driven primary analysis of raw sequencing data. / Gautier, Laurent (Inventor); Lund, Ole (Inventor).

    IPC No.: G06F19/22. Patent No.: WO2014060305. Apr 24, 2014.

    Publication: ResearchPatent – Annual report year: 2014

  106. Published

    Dataset size and composition impact the reliability of performance benchmarks for peptide-MHC binding predictions. / Kim, Yohan; Sidney, John; Buus, Søren; Sette, Alessandro; Nielsen, Morten; Peters, Bjoern.

    In: B M C Bioinformatics, Vol. 15, No. 1, 241, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  107. Published

    Decoding network dynamics in cancer. / Linding, Rune.

    In: Clinical and Experimental Metastasis, Vol. 32, No. 3, 2014, p. 182-182.

    Publication: Research - peer-reviewConference abstract in journal – Annual report year: 2015

  108. Published

    Derived immune and ancestral pigmentation alleles in a 7,000-year-old Mesolithic European. / Olalde, Inigo; Allentoft, Morten E.; Sanchez-Quinto, Federico; Santpere, Gabriel; Chiang, Charleston W. K.; DeGiorgio, Michael; Prado-Martinez, Javier; Rodriguez, Juan Antonio; Rasmussen, Simon; Quilez, Javier; Ramirez, Oscar; Marigorta, Urko M.; Fernandez-Callejo, Marcos; Prada, Maria Encina; Encinas, Julio Manuel Vidal; Nielsen, Rasmus; Netea, Mihai G.; Novembre, John; Sturm, Richard A.; Sabeti, Pardis; Marques-Bonet, Tomas; Navarro, Arcadi; Willerslev, Eske; Lalueza-Fox, Carles.

    In: NATURE, Vol. 507, No. 7491, 2014, p. 225-228.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  109. Published

    Detection of a caspase-3 cleaved tau fragment in the serum of alzheimer's patients by using immunoprecipitation and lc-ms/ms. / Inekci, Dilek; Hägglund, Per; Linemann, Thomas; Jacobsen, Susanne; Svensson, Birte; Vilholm, Ole; Henriksen, Kim.

    In: Alzheimer's & Dementia, Vol. 10, No. 4, 2014, p. P272-P273.

    Publication: Research - peer-reviewConference abstract in journal – Annual report year: 2014

  110. Published

    Development of synchronous VHL syndrome tumors reveals contingencies and constraints to tumor evolution. / Fisher, Rosalie; Horswell, Stuart; Rowan, Andrew; Salm, Maximilian P.; de Bruin, Elza C.; Gulati, Sakshi; McGranahan, Nicholas; Stares, Mark; Gerlinger, Marco; Varela, Ignacio; Crockford, Andrew; Favero, Francesco; Quidville, Virginie; André, Fabrice; Navas, Carolina; Grönroos, Eva; Nicol, David; Hazell, Steve; Hrouda, David; O’Brien, Tim; Matthews, Nik; Phillimore, Ben; Begum, Sharmin; Rabinowitz, Adam; Biggs, Jennifer; Bates, Paul A.; McDonald, Neil Q.; Stamp, Gordon; Spencer-Dene, Bradley; Hsieh, James J.; Xu, Jianing; Pickering, Lisa; Gore, Martin; Larkin, James; Swanton, Charles.

    In: Genome Biology (Online Edition), Vol. 15, No. 8, 433, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  111. Published

    Different binding motifs of the celiac disease-associated HLA molecules DQ2.5, DQ2.2, and DQ7.5 revealed by relative quantitative proteomics of endogenous peptide repertoires. / Bergseng, Elin; Dørum, Siri; Arntzen, Magnus Ø.; Nielsen, Morten; Nygård, Ståle; Buus, Søren; de Souza, Gustavo A. ; Sollid, Ludvig M.

    In: Immunogenetics, Vol. 67, No. 2, 2014, p. 73-84.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  112. Published

    Discovery of biomarkers for glycaemic deterioration before and after the onset of type 2 diabetes: rationale and design of the epidemiological studies within the IMI DIRECT Consortium. / Koivula, Robert W.; Heggie, Alison; Barnett, Anna; Cederberg, Henna; Hansen, Tue Haldor; Koopman, Anitra D.; Ridderstrale, Martin; Rutters, Femke; Vestergaard, Henrik; Gupta, Ramneek; Herrgard, Sanna; Heymans, Martijn W.; Perry, Mandy H.; Rauh, Simone; Siloaho, Maritta; Teare, Harriet J. A.; Thorand, Barbara; Bell, Jimmy; Brunak, Søren; Frost, Gary; Jablonka, Bernd; Mari, Andrea; McDonald, Tim J.; Dekker, Jacqueline M.; Hansen, Torben; Hattersley, Andrew; Laakso, Markku; Pedersen, Oluf; Koivisto, Veikko; Ruetten, Hartmut; Walker, Mark; Pearson, Ewan; Franks, Paul W.

    In: DIABETOLOGIA, Vol. 57, No. 6, 2014, p. 1132-1142.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  113. Published

    Discrepancies in listed adverse drug reactions in pharmaceutical product information supplied by the regulatory authorities in Denmark and the USA. / Eriksson, Robert; Aagaard, Lise; Jensen, Lars Juhl; Borisova, Liza; Hørlück, Dorte; Brunak, Søren; Hansen, Ebba Holme.

    In: Pharmacology Research & Perspectives, Vol. 2, No. 3, e00038, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  114. Published

    DNA secondary structures are associated with recombination in major Plasmodium falciparum variable surface antigen gene families. / Sander, Adam F.; Lavstsen, Thomas; Rask, Thomas Salhøj; Lisby, Michael; Salanti, Ali; Fordyce, Sarah L.; Jespersen, Jakob S.; Carter, Richard; Deitsch, Kirk W.; Theander, Thor G.; Pedersen, Anders Gorm; Arnot, David E.

    In: Nucleic Acids Research, Vol. 42, No. 4, 2014, p. 202270-2281.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  115. Published

    Dose-Specific Adverse Drug Reaction Identification in Electronic Patient Records: Temporal Data Mining in an Inpatient Psychiatric Population. / Eriksson, Robert; Werge, Thomas; Jensen, Lars Juhl; Brunak, Søren.

    In: Drug Safety, Vol. 37, No. 4, 2014, p. 237-247.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  116. Published

    Early immune response patterns to pathogenic bacteria are associated to increased risk of lower respiratory infections in children. / Vissing, N. H.; Larsen, Jeppe Madura; Rasmussen, Mette Annelie; Thysen, Anna Hammerich; Chawes, B. L.; Bønnelykke, K.; Pedersen, Susanne Brix; Bisgaard, Hans Flinker.

    In: ALLERGY, Vol. 69, No. Supplement s99, 84, 2014, p. 37-37.

    Publication: Research - peer-reviewConference abstract in journal – Annual report year: 2014

  117. Published

    Effect of subinhibitory concentrations of four commonly used biocides on the conjugative transfer of Tn916 in Bacillus subtilis. / Seier-Petersen, Maria Amalie; Jasni, A.; Aarestrup, Frank Møller; Vigre, Håkan; Mullany, P.; Roberts, A. P.; Agersø, Yvonne.

    In: Journal of Antimicrobial Chemotherapy, Vol. 69, No. 2, 2014, p. 343-348.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  118. Published

    Effects of pregnancy on obesity-induced inflammation in a mouse model of fetal programming. / Ingvorsen, Camilla; Thysen, Anna Hammerich; Fernandez-Twinn, D.; Nordby, Pernille; Nielsen, Kristian Fog; Ozanne, S. E.; Pedersen, Susanne Brix; Hellgren, Lars.

    In: International Journal of Obesity, Vol. 38, No. 10, 2014, p. 1282-1289.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  119. Published

    Effects on metabolic markers are modified by PPARG2 and COX2 polymorphisms in infants randomized to fish oil.. / Harsløf, Laurine B. S.; Damsgaard, Camilla T.; Hellgren, Lars I.; Andersen, Anders Daniel; Vogel, Ulla; Lauritzen, Lotte.

    In: Genes & Nutrition, Vol. 9, No. 3, 396, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  120. Published

    Enhancing Reproducibility in Cancer Drug Screening: How Do We Move Forward?. / Shi, Leming; Haibe-Kains, Benjamin; Birkbak, Nicolai Juul; Bedard, Philippe L.; Hatzis, Christos; Stern, David F.; Clarke, Robert; Quackenbush, John; Beck, Andrew H.; Aerts, Hugo J. W. L.

    In: Cancer Research, Vol. 74, No. 15, 2014, p. 4016-4023.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  121. Published

    Equilibrium simulations of proteins using molecular fragment replacement and NMR chemical shifts. / Boomsma, Wouter; Tian, Pengfei; Frellsen, J.; Ferkinghoff-Borg, Jesper; Hamelryck, T.; Lindorff-Larsen, K.; Vendruscolo, M.

    In: Proceedings of the National Academy of Sciences, Vol. 111, No. 38, 2014, p. 13852-13857.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  122. Published

    Erratum to: Dose-Specific Adverse Drug Reaction Identification in Electronic Patient Records: Temporal Data Mining in an Inpatient Psychiatric Population. / Eriksson, Robert; Werge, Thomas; Jensen, Lars Juhl; Brunak, Søren.

    In: Drug Safety, Vol. 37, 2014, p. 379.

    Publication: Research - peer-reviewComment/debate – Annual report year: 2014

  123. Published

    Evaluation of whole genome sequencing for outbreak detection of Salmonella enterica. / Leekitcharoenphon, Pimlapas; Nielsen, Eva M.; Kaas, Rolf Sommer; Lund, Ole; Aarestrup, Frank Møller.

    In: P L o S One, Vol. 9, No. 2, e87991, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  124. Published
  125. Published

    Expanding user’s query with tag-neighbors for effective medical information retrieval. / Durao, Frederico; Bayyapu, Karunakar Reddy; Xu, Guandong; Dolog, Peter; Lage, Ricardo.

    In: Multimedia Tools and Applications, Vol. 71, No. 2, 2014, p. 905-929.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  126. Published

    Experimental and computational tools for analysis of signaling networks in primary cells. / Schoof, Erwin M; Linding, Rune.

    In: Current Protocols in Immunology, Vol. 104, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  127. Published

    Exploring mechanisms of diet-colon cancer associations through candidate molecular interaction networks. / Westergaard, David; Li, Jun; Jensen, Kasper; Kouskoumvekaki, Irene; Panagiotou, Gianni.

    In: B M C Genomics, Vol. 15, No. 1, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  128. Published

    Expression of regulators of mitotic fidelity are associated with intercellular heterogeneity and chromosomal instability in primary breast cancer.. / Roylance, Rebecca; Endesfelder, David; Jamal-Hanjani, Mariam; Burrell, Rebecca A.; Gorman, Patricia; Sander, Jil; Murphy, Niamh; Birkbak, Nicolai Juul; Hanby, Andrew M.; Speirs, Valerie; Johnston, Stephen R. D.; Kschischo, Maik; Swanton, Charles.

    In: Breast Cancer Research and Treatment, Vol. 148, No. 1, 2014, p. 221-229.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  129. Published

    Facilitating the use of large-scale biological data and tools in the era of translational bioinformatics. / Kouskoumvekaki, Irene; Shublaq, Nour ; Brunak, Søren.

    In: Briefings in Bioinformatics, Vol. 15, No. 6, 2014, p. 942-952.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  130. Published

    Genetic association study of QT interval highlights role for calcium signaling pathways in myocardial repolarization. / Arking, Dan E; Pulit, Sara L; Crotti, Lia; van der Harst, Pim; Munroe, Patricia B; Koopmann, Tamara T; Sotoodehnia, Nona; Rossin, Elizabeth J; Morley, Michael; Wang, Xinchen; Johnson, Andrew D; Lundby, Alicia; Gudbjartsson, Daniel F.; Noseworthy, Peter A; Eijgelsheim, Mark; Bradford, Yuki; Tarasov, Kirill V; Dörr, Marcus; Müller-Nurasyid, Martina; Lahtinen, Annukka M; Nolte, Ilja M; Smith, Albert Vernon; Bis, Joshua C; Isaacs, Aaron; Newhouse, Stephen J; Evans, Daniel S; Post, Wendy S; Waggott, Daryl; Lyytikäinen, Leo-Pekka; Hicks, Andrew A; Eisele, Lewin; Ellinghaus, David; Hayward, Caroline; Navarro, Pau; Ulivi, Sheila; Tanaka, Toshiko; Tester, David J; Chatel, Stephanie; Gustafsson, Stefan; Kumari, Meena; Morris, Richard W; Naluai, Asa T; Padmanabhan, Sandosh; Kluttig, Alexander; Strohmer, Bernhard; Panayiotou, Andrie G; Torres, Maria; Knoflach, Michael; Hubacek, Jaroslav A; Slowikowski, Kamil; Raychaudhuri, Soumya; Kumar, Runjun D; Harris, Tamara B; Launer, Lenore J; Shuldiner, Alan R; Alonso, Alvaro; Bader, Joel S; Ehret, Georg; Huang, Hailiang; Kao, W H Linda; Strait, James B; Macfarlane, Peter W; Brown, Morris; Caulfield, Mark J; Samani, Nilesh J; Kronenberg, Florian; Willeit, Johann; Smith, J Gustav; Greiser, Karin H; Meyer Zu Schwabedissen, Henriette; Werdan, Karl; Carella, Massimo; Zelante, Leopoldo; Heckbert, Susan R; Psaty, Bruce M; Rotter, Jerome I; Kolcic, Ivana; Polasek, Ozren; Wright, Alan F; Griffin, Maura; Daly, Mark J; Arnar, David O; H��lm, Hilma; Thorsteinsdottir, Unnur; Denny, Joshua C; Roden, Dan M; Zuvich, Rebecca L; Emilsson, Valur; Plump, Andrew S; Larson, Martin G; O'Donnell, Christopher J; Yin, Xiaoyan; Bobbo, Marco; D'Adamo, Adamo P; Iorio, Annamaria; Sinagra, Gianfranco; Carracedo, Angel; Cummings, Steven R; Nalls, Michael A; Jula, Antti; Kontula, Kimmo K; Marjamaa, Annukka; Oikarinen, Lasse; Perola, Markus; Porthan, Kimmo; Erbel, Raimund; Hoffmann, Per; Jöckel, Karl-Heinz; Kälsch, Hagen; Nöthen, Markus M; den Hoed, Marcel; Loos, Ruth J F; Thelle, Dag S; Gieger, Christian; Meitinger, Thomas; Perz, Siegfried; Peters, Annette; Prucha, Hanna; Sinner, Moritz F; Waldenberger, Melanie; de Boer, Rudolf A; Franke, Lude; van der Vleuten, Pieter A; Beckmann, Britt Maria; Martens, Eimo; Bardai, Abdennasser; Hofman, Nynke; Wilde, Arthur A M; Behr, Elijah R; Dalageorgou, Chrysoula; Giudicessi, John R; Medeiros-Domingo, Argelia; Barc, Julien; Kyndt, Florence; Probst, Vincent; Ghidoni, Alice; Insolia, Roberto; Hamilton, Robert M; Scherer, Stephen W; Brandimarto, Jeffrey; Margulies, Kenneth; Moravec, Christine E; Fabiola, no-firstname; Fuchsberger, Christian; O'Connell, Jeffrey R; Lee, Wai K; Watt, Graham C M; Campbell, Harry; Wild, Sarah H; El Mokhtari, Nour E; Frey, Norbert; Asselbergs, Folkert W; Leach, Irene Mateo; Navis, Gerjan; van den Berg, Maarten P; van Veldhuisen, Dirk J; Kellis, Manolis; Krijthe, Bouwe P; Franco, Oscar H; Hofman, Albert; Kors, Jan A; Uitterlinden, Andre G.; Witteman, Jacqueline C M; Kedenko, Lyudmyla; Lamina, Claudia; Oostra, Ben A; Abecasis, Goncalo R; Lakatta, Edward G; Mulas, Antonella; Orrú, Marco; Schlessinger, David; Uda, Manuela; Markus, Marcello R P; Völker, Uwe; Snieder, Harold; Spector, Timothy D; Arnlöv, Johan; Lind, Lars; Sundström, Johan; Syvänen, Ann-Christine; Kivimaki, Mika; Kähönen, Mika; Mononen, Nina; Raitakari, Olli T; Viikari, Jorma S; Adamkova, Vera; Kiechl, Stefan; Brion, Maria; Nicolaides, Andrew N; Paulweber, Bernhard; Haerting, Johannes; Dominiczak, Anna F; Nyberg, Fredrik; Whincup, Peter H; Hingorani, Aroon D; Schott, Jean-Jacques; Bezzina, Connie R; Ingelsson, Erik; Ferrucci, Luigi; Gasparini, Paolo; Wilson, James F; Rudan, Igor; Franke, Andre; Mühleisen, Thomas W; Pramstaller, Peter P; Lehtimäki, Terho J; Paterson, Andrew D; Parsa, Afshin; Liu, Yongmei; van Duijn, Cornelia M; Siscovick, David S; Gudnason, Vilmundur; Jamshidi, Yalda; Salomaa, Veikko; Felix, Stephan B; Sanna, Serena; Ritchie, Marylyn D; Stricker, Bruno H; Stefansson, Kari; Boyer, Laurie A; Cappola, Thomas P; Olsen, Jesper V; Hansen, Kasper Lage; Schwartz, Peter J; Kääb, Stefan; Chakravarti, Aravinda; Ackerman, Michael J; Pfeufer, Arne; de Bakker, Paul I W; Newton-Cheh, Christopher; no-lastname, no-firstname.

    In: Nature Genetics, Vol. 46, No. 8, 2014, p. 826-836.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  131. Published

    Genome-wide Ancestry Patterns in Rapanui Suggest Pre-European Admixture with Native Americans. / Moreno-Mayar, J. Víctor; Rasmussen, Simon; Seguin-Orlando, Andaine; Rasmussen, Morten; Liang, Mason; Flåm, Siri Tennebø; Lie, Benedicte Alexandra; Gilfillan, Gregor Duncan; Nielsen, Rasmus; Thorsby, Erik; Willerslev, Eske; Malaspinas, Anna-Sapfo.

    In: Current Biology, Vol. 24, No. 21, 2014, p. 2518-2525.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  132. Published

    Genome-wide association analyses identify variants in developmental genes associated with hypospadias. / Geller, Frank; Feenstra, Bjarke; Carstensen, Lisbeth; Pers, Tune H.; van Rooij, Iris A. L. M.; Korberg, Izabella Baranowska; Choudhry, Shweta; Karjalainen, Juha M.; Schnack, Tine H.; Hollegaard, Mads V.; Feitz, Wout F. J.; Roeleveld, Nel; Hougaard, David M.; Hirschhorn, Joel N.; Franke, Lude; Baskin, Laurence S.; Nordenskjold, Agneta; van der Zanden, Loes F. M.; Melbye, Mads.

    In: Nature Genetics, Vol. 46, No. 9, 2014, p. 957-967.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  133. Published
  134. Published

    Gliadin affects glucose homeostasis and intestinal metagenome in C57BL/6 mice fed and high-fat diet. / Zhang, Li; Hansen, Axel Kornerup; Bahl, Martin Iain; Hansen, Camilla Hartmann Friis; Andersen, Daniel; Pedersen, Susanne Brix; Hellgren, Lars; Licht, Tine Rask.

    2014. Abstract from The Danish Microbiological Society Annual Congress 2014, Copenhagen, Denmark.

    Publication: Research - peer-reviewConference abstract for conference – Annual report year: 2014

  135. Published

    Hearing loss in relation to sound exposure of professional symphony orchestra musicians. / Schmidt, J. H. ; Pedersen, E. R.; Paarup, H. M.; Christensen-Dalsgaard, Jakob; Andersen, T; Poulsen, T.; Bælum, Jacob.

    In: Ear and Hearing, Vol. 35, No. 4, 2014, p. 448-460.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  136. Published

    High-Resolution Melt Analysis for Rapid Comparison of Bacterial Community Compositions. / Hjelmsø, Mathis Hjort; Hansen, Lars Hestbjerg; Bælum, Jacob; Feld, Louise; Holben, William E.; Jacobsen, Carsten Suhr.

    In: Applied and Environmental Microbiology, Vol. 80, No. 12, 2014, p. 3568-3575.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  137. Published

    Host genome variations and risk of infections during induction treatment for childhood acute lymphoblastic leukaemia. / Lund, Bendik; Wesolowska-Andersen, Agata; Lausen, Birgitte; Borst, Louise; Rasmussen, Kirsten Kørup; Müller, Klaus; Klungland, Helge; Gupta, Ramneek; Schmiegelow, Kjeld.

    In: European Journal of Haematology, Vol. 92, No. 4, 2014, p. 321-330.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  138. Published

    Hybridization Capture Using Short PCR Products Enriches Small Genomes by Capturing Flanking Sequences (CapFlank). / Tsangaras, Kyriakos; Wales, Nathan; Sicheritz-Pontén, Thomas; Rasmussen, Simon; Michaux, Johan; Ishida, Yasuko; Morand, Serge; Kampmann, Marie-Louise; Gilbert, M. Thomas P.; Greenwood, Alex D.

    In: PLOS ONE, Vol. 9, No. 10, e109101, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  139. Published

    Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes. / Nielsen, Henrik Bjørn; Almeida, Mathieu; Juncker, Agnieszka; Rasmussen, Simon; Li, Junhua; Sunagawa, Shinichi; Plichta, Damian Rafal; Gautier, Laurent; Pedersen, Anders Gorm; Emmanuelle, Le Chatelier; Pelletier, Eric; Bonde, Ida; Nielsen, Trine; Manichanh, Chaysavanh; Arumugam, Manimozhiyan; Batto, Jean-Michel; dos Santos, Marcelo Bertalan Quintanilha; Blom, Nikolaj; Borruel, Natalia; Burgdorf, Kristoffer S.; Boumezbeur, Fouad; Casellas, Francesc; Doré, Joël; Dworzynski, Piotr; Guarner, Francisco; Hansen, Torben; Hildebrand, Falk; Kaas, Rolf Sommer; Kennedy, Sean; Kristiansen, Karsten; Kultima, Jens Roat; Léonard, Pierre; Levenez, Florence; Lund, Ole; Moumen, Bouziane; Denis, Le Paslier; Pons, Nicolas; Pedersen, Oluf; Prifti, Edi; Qin, Junjie; Raes, Jeroen; Sørensen, Søren; Tap, Julien; Tims, Sebastian; Ussery, David; Yamada, Takuji; Renault, Pierre; Sicheritz-Pontén, Thomas; Bork, Peer; Wang, Jun; Brunak, Søren; Ehrlich, S. Dusko.

    In: Nature Biotechnology, Vol. 32, No. 8, 2014, p. 822-828.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  140. Published

    Identification and HLA-Tetramer-Validation of Human CD4(+) and CD8(+) T Cell Responses against HCMV Proteins IE1 and IE2. / Braendstrup, Peter; Mortensen, Bo Kok; Justesen, Sune Frederik Lamdahl; Osterby, Thomas; Rasmussen, Michael; Hansen, Andreas Martin; Christiansen, Claus Bohn; Hansen, Morten Bagge; Nielsen, Morten; Vindelov, Lars; Buus, Søren; Stryhn, Anette.

    In: PLOS ONE, Vol. 9, No. 4, e94892, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  141. Published

    Identification of Hypoxia-Regulated Proteins Using MALDI-Mass Spectrometry Imaging Combined with Quantitative Proteomics. / Djidja, Marie-Claude; Chang, Joan; Hadjiprocopis, Andreas; Schmich, Fabian; Sinclair, John; Mršnik, Martina; Schoof, Erwin M.; Barker, Holly E.; Linding, Rune; Jørgensen, Claus; Erler, Janine T.

    In: Journal of Proteome Research, Vol. 13, 2014, p. 2297-2313.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  142. Published

    Identification of novel immune and barrier genes in atopic dermatitis by laser capture micro-dissection. / Esaki, H.; Ewald, David Adrian; Ungar, B.; Rozenblit, M.; Zheng, Xueyan; Xu, Hao Ran; Estrada, Y. D.; Peng, X.; Mitsui, H.; Litman, T.; Suarez-Farinas, M.; Krueger, J. G.; Guttman-Yassky, E.

    In: Experimental Dermatology, Vol. 23, 2014, p. 153-163.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  143. Published

    Identification of Odorant-Receptor Interactions by Global Mapping of the Human Odorome. / Audouze, Karine Marie Laure; Tromelin, Anne; Le Bon, Anne Marie; Belloir, Christine; Petersen, Rasmus Koefoed; Kristiansen, Karsten; Brunak, Søren; Taboureau, Olivier .

    In: PLOS ONE, Vol. 9, No. 4, e93037, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  144. Published
  145. Published

    Immunoinformatics of Placental Malaria Vaccine Development. / Jessen, Leon Eyrich; Lund, Ole (Main supervisor); Hviid, Lars (Supervisor); Nielsen, Morten (Supervisor).

    Technical University of Denmark, 2014. 239 p.

    Publication: ResearchPh.D. thesis – Annual report year: 2014

  146. Published

    Improved pan-specific MHC class I peptide-binding predictions using a novel representation of the MHC-binding cleft environment. / Carrasco Pro, S.; Zimic, M.; Nielsen, Morten.

    In: Tissue Antigens, Vol. 83, No. 2, 2014, p. 94-100.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  147. Published

    Improving biotech education through gamified laboratory simulations. / Bonde, Mads; Makransky, Guido; Wandall, Jakob; Larsen, Mette Voldby; Morsing, Mikkel; Jarmer, Hanne Østergaard; Sommer, Morten.

    In: Nature Biotechnology, Vol. 32, No. 7, 2014, p. 694-697.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  148. Published

    Improving the accuracy of the structure prediction of the third hypervariable loop of the heavy chains of antibodies. / Messih, M. A.; Lepore, R.; Marcatili, Paolo; Tramontano, A.

    In: Bioinformatics, Vol. 30, No. 19, 2014, p. 2733-2740.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  149. Published

    In Silico Detection and Typing of Plasmids using PlasmidFinder and Plasmid Multilocus Sequence Typing. / Carattoli, Alessandra; Zankari, Ea; García-Fernández, Aurora; Larsen, Mette Voldby; Lund, Ole; Villa, Laura; Aarestrup, Frank Møller; Hasman, Henrik.

    In: Antimicrobial Agents and Chemotherapy, Vol. 58, No. 7, 2014, p. 3895-3903.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  150. Published

    In silico prediction of Gallibacterium anatis pan-immunogens. / Bager, Ragnhild J.; Kudirkiene, Egle; da Piedade, Isabelle; Seemann, Torsten; Nielsen, Tine K.; Pors, Susanne E.; Mattsson, Andreas Holm; Boyce, John D.; Adler, Ben; Bojesen, Anders M.

    In: Veterinary Research, Vol. 45, No. 1, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  151. Published

    Interaction of Lactobacillus acidophilus NCFM grown on different carbohydrates with human intestinal epithelial cells: Adhesion Properties and roles of S-layer Proteins. / Celebioglu, Hasan Ufuk; Lahtinen, Sampo J; Pedersen, Susanne Brix; Abou Hachem, Maher ; Svensson, Birte.

    2014. Abstract from 11th international Symposium on Lactic Acid Bacteria, Egmond aan Zee, Netherlands.

    Publication: Research - peer-reviewConference abstract for conference – Annual report year: 2014

  152. Published

    Intercorrelations of lipoprotein subfractions and their covariation with lifestyle factors in healthy men. / Parlesak, Alexandr; Eckoldt, Joachim; Winkler, Karl; Bode, Johann Christian.

    In: Journal of Clinical Biochemistry and Nutrition, Vol. 54, No. 3, 2014, p. 174-180.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  153. Published
  154. Published

    KinomeXplorer: an integrated platform for kinome biology studies. / Horn, Heiko; Schoof, Erwin; Kim, Jinho; Robin, Xavier; Miller, Martin Lee; Diella, Francesca; Palma, Anita; Cesareni, Gianni; Jensen, Lars Juhl; Linding, Rune.

    In: Nature Methods, Vol. 11, No. 6, 2014, p. 603-604.

    Publication: Research - peer-reviewLetter – Annual report year: 2014

  155. Published

    Lactate dehydrogenase as a selection criterion for ipilimumab treatment in metastatic melanoma. / Kelderman, Sander; Heemskerk, Bianca; van Tinteren, Harm; van den Brom, Rob R. H.; A. P. Hospers, Geke; van den Eertwegh, Alfonsus J. M.; W. Kapiteijn, Ellen; Willem B. de Groot, Jan; Soetekouw, Patricia; L. Jansen, Rob; Fiets , Edward; J. S. Furness, Andrew; Renn, Alexandra; Krzystanek, Marcin; Szallasi, Zoltan Imre; Lorigan, Paul; Gore, Martin E.; N. M. Schumacher, Ton; B. A. G. Haanen, John; Larkin, James M.G.; U. Blank, Christian.

    In: Cancer Immunology, Immunotherapy, Vol. 63, No. 5, 2014, p. 449-458.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  156. Published

    Large-scale analysis of B-cell epitopes on influenza virus hemagglutinin - implications for cross-reactivity of neutralizing antibodies.. / Sun, Jing; Kudahl, Ulrich J.; Simon, Christian; Cao, Zhiwei; Reinherz, Ellis L.; Brusic, Vladimir.

    In: Frontiers in Immunology, Vol. 5, 38, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  157. Published

    Library sequencing strategies for comparative analysis of stress resistance mechanisms in Escherichia coli strains. / Lennen, Rebecca; Bonde, Ida; Koza, Anna; Herrgard, Markus.

    In: New Biotechnology, Vol. 31, 2014, p. S86.

    Publication: Research - peer-reviewConference abstract in journal – Annual report year: 2014

  158. Published

    Lineage-specific interface proteins match up the cell cycle and differentiation in embryo stem cells.. / Re, Angela; Workman, Christopher; Waldron, Levi; Quattrone, Alessandro; Brunak, Søren.

    In: Stem Cell Research, Vol. 13, No. 2, 2014, p. 316-328.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  159. Published

    LocTree3 prediction of localization. / Goldberg, T.; Hecht, M.; Hamp, T.; Karl, T.; Yachdav, G.; Ahmed, Nadeed; Altermann, U.; Angerer, P.; Ansorge, S.; Balasz, K.; Bernhofer, M.; Betz, A.; Cizmadija, L.; Do, K. T.; Gerke, J.; Greil, R.; Joerdens, V.; Hastreiter, M.; Hembach, K.; Herzog, M.; Kalemanov, M.; Kluge, M.; Meier, A.; Nasir, H.; Neumaier, U.; Prade, V.; Reeb, J.; Sorokoumov, A.; Troshani, I.; Vorberg, S.; Waldraff, S.; Zierer, J.; Nielsen, Henrik; Rost, B.

    In: Nucleic Acids Research, Vol. 42, No. W1, 2014, p. W350-W355.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  160. Published

    Lysine deacetylase inhibition prevents diabetes by chromatin-independent immunoregulation and β-cell protection. / Christensen, Dan Ploug; Gysemans, Conny; Lundh, Morten; Dahllöf, Mattias Salling; Noesgaard, Daniel; Schmidt, Søren Fisker; Mandrup, Susanne; Birkbak, Nicolai Juul; Workman, Christopher; Piemonti, Lorenzo; Blaabjerg, Lykke; Monzani, Valmen; Fossati, Gianluca; Mascagni, Paolo; Paraskevas, Steven; Aikin, Reid A.; Billestrup, Nils; Grunnet, Lars Groth; Dinarello, Charles A.; Mathieu, Chantal; Mandrup-Poulsen, Thomas.

    In: National Academy of Sciences. Proceedings, Vol. 111, No. 3, 2014, p. 1055-1059.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  161. Published

    Metagenomics reveals sediment microbial community response to Deepwater Horizon oil spill. / Mason, Olivia U.; Scott, Nicole M.; Gonzalez, Antonio; Robbins-Pianka, Adam; Bælum, Jacob; Kimbrel, Jeffrey; Bouskill, Nicholas J.; Prestat, Emmanuel; Borglin, Sharon; Joyner, Dominique C.; Fortney, Julian L.; Jurelevicius, Diogo; Stringfellow, William T.; Alvarez-Cohen, Lisa; Hazen, Terry C.; Knight, Rob; Gilbert, Jack A.; Jansson, Janet K.

    In: I S M E Journal, Vol. 8, No. 7, 2014, p. 1464-1475.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  162. Published

    Metagenomic Systems Biology of the Human Microbiome. / Bonde, Ida; Nielsen, Henrik Bjørn (Supervisor); Sicheritz-Pontén, Thomas (Main supervisor).

    Technical University of Denmark, 2014. 153 p.

    Publication: ResearchPh.D. thesis – Annual report year: 2014

  163. Published

    Modulation of the Chromatin Phosphoproteome by the Haspin Protein Kinase. / Maiolica, Alessio; de Medina-Redondo, Maria; Schoof, Erwin; Chaikuad, Apirat; Villa, Fabrizio; Gatti, Marco; Jeganathan, Siva; Lou, Hua Jane; Novy, Karel; Hauri, Simon; Toprak, Umut H.; Herzog, Franz; Meraldi, Patrick; Penengo, Lorenza; Turk, Benjamin E.; Knapp, Stefan; Linding, Rune; Aebersold, Ruedi.

    In: Molecular and Cellular Proteomics, Vol. 13, No. 7, 2014, p. 1724-1740.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  164. Published

    Modules, networks and systems medicine for understanding disease and aiding diagnosis. / Gustafsson, Mika; Nestor, Colm E.; Zhang, Huan; Barabasi, Albert-Laszlo; Baranzini, Sergio; Brunak, Søren; Chung, Kian Fan; Federoff, Howard J.; Gavin, Anne-Claude; Meehan, Richard R.; Picotti, Paola; Pujana, Miguel Angel; Rajewsky, Nikolaus; Smith, Kenneth G. C.; Sterk, Peter J.; Villoslada, Pablo; Benson, Mikael.

    In: Genome Medicine, Vol. 6, No. 10, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  165. Published

    MR1-restricted MAIT cells display ligand discrimination and pathogen selectivity through distinct T cell receptor usage.. / Gold, Marielle C.; McLaren, James E.; Reistetter, Joseph A.; Smyk-Pearson, Sue; Ladell, Kristin; Swarbrick, Gwendolyn M.; Yu, Yik Y. L.; Hansen, Ted H.; Lund, Ole; Nielsen, Morten; Gerritsen, Bram; Kesmir, Can; Miles, John J.; Lewinsohn, Deborah A.; Price, David A.; Lewinsohn, David M.

    In: Journal of Experimental Medicine, Vol. 211, No. 8, 2014, p. 1601-1610.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  166. Published

    Multiparametric Bioinformatics Distinguish the CD4/CD8 Ratio as a Suitable Laboratory Predictor of Combined T Cell Pathogenesis in HIV Infection. / Buggert, Marcus; Frederiksen, Juliet Wairimu; Noyan, Kajsa; Svärd, Jenny; Barqasho, Babilonia; Sönnerborg, Anders; Lund, Ole; Nowak, Piotr; Karlsson, Annika C.

    In: Journal of Immunology, Vol. 192, No. 5, 2014, p. 2099-2108.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  167. Published
  168. Published

    Natural genetic variation impacts expression levels of coding, non-coding, and antisense transcripts in fission yeast.. / Clément-Ziza, Mathieu; Marsellach, Francesc X.; Codlin, Sandra; Papadakis, Manos A.; Reinhardt, Susanne; Rodríguez-López, María; Martin, Stuart; Marguerat, Samuel; Schmidt, Alexander; Lee, Eunhye; Workman, Christopher; Bähler, Jürg; Beyer, Andreas.

    In: Molecular Systems Biology, Vol. 10, No. 764, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  169. Published

    Natural mannosylation of HIV-1 gp120 imposes no immunoregulatory effects in primary human plasmacytoid dendritic cells. / Søndergaard, Jonas Nørskov; Vinner, Lasse; Pedersen, Susanne Brix.

    In: Molecular Immunology, Vol. 59, No. 2, 2014, p. 180-187.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  170. Published

    NetFCM: A Semi-Automated Web-Based Method for Flow Cytometry Data Analysis. / Frederiksen, Juliet Wairimu; Buggert, Marcus; Karlsson, Annika C.; Lund, Ole.

    In: Cytometry. Part A, Vol. 85, No. 11, 2014, p. 969-977.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  171. Published

    NetTepi: an integrated method for the prediction of T cell epitopes. / Trolle, Thomas; Nielsen, Morten.

    In: Immunogenetics, Vol. 66, No. 7-8, 2014, p. 449-456.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  172. Published

    Nordic mcl2-3 trials: mirna-18b overexpression identifies a mantle cell lymphoma subgroup with poor survival and improves mipi-b prediction of prognosis. / Husby, Sofie; Ralfkiaer, U.; Garde, Christian; Ek, Sara; Kolstad, A.; Jerkeman, M.; Laurell, A.; Raty, R.; Ehinger, M.; Sundstrom, C.; Karjalainen-Lindsberg, M. L.; Delabie, J.; Clasen-Linde, E.; Brown, P. D. N.; Workman, Christopher; Geisler, C. H.; Gronbaek, K.

    In: Haematologica, Vol. 99, No. S1, 2014, p. 503-503.

    Publication: Research - peer-reviewConference abstract in journal – Annual report year: 2014

  173. Published

    NutriChem: a systems chemical biology resource to explore the medicinal value of plant-based foods. / Jensen, Kasper; Panagiotou, Gianni; Kouskoumvekaki, Irene.

    In: Nucleic Acids Research, Vol. 43, 2014, p. D940-D945.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  174. Published

    Nutritional Systems Biology. / Jensen, Kasper; Panagiotou, Gianni (Supervisor); Kouskoumvekaki, Irene (Main supervisor).

    Technical University of Denmark, 2014. 139 p.

    Publication: ResearchPh.D. thesis – Annual report year: 2014

  175. E-pub ahead of print

    Oxidative stress response pathways: Fission yeast as archetype. / Papadakis, Manos A.; Workman, Christopher.

    In: Critical Reviews in Microbiology, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  176. Published

    Parent-of-origin-specific allelic associations among 106 genomic loci for age at menarche. / Perry, John R. B.; Day, Felix; Elks, Cathy E.; Sulem, Patrick; Thompson, Deborah J.; Ferreira, Teresa; He, Chunyan; Chasman, Daniel I.; Esko, Toenu; Thorleifsson, Gudmar; Albrecht, Eva; Ang, Wei Q.; Corre, Tanguy; Cousminer, Diana L.; Feenstra, Bjarke; Franceschini, Nora; Ganna, Andrea; Johnson, Andrew D.; Kjellqvist, Sanela; Lunetta, Kathryn L.; McMahon, George; Nolte, Ilja M.; Paternoster, Lavinia; Porcu, Eleonora; Smith, Albert V.; Stolk, Lisette; Teumer, Alexander; Tsernikova, Natalia; Tikkanen, Emmi; Ulivi, Sheila; Wagner, Erin K.; Amin, Najaf; Bierut, Laura J.; Byrne, Enda M.; Hottenga, Jouke-Jan; Koller, Daniel L.; Mangino, Massimo; Pers, Tune Hannes; Yerges-Armstrong, Laura M.; Zhao, Jing Hua; Andrulis, Irene L.; Anton-Culver, Hoda; Atsma, Femke; Bandinelli, Stefania; Beckmann, Matthias W.; Benitez, Javier; Blomqvist, Carl; Bojesen, Stig E.; Bolla, Manjeet K.; Bonanni, Bernardo; Brauch, Hiltrud; Brenner, Hermann; Buring, Julie E.; Chang-Claude, Jenny; Chanock, Stephen; Chen, Jinhui; Chenevix-Trench, Georgia; Collee, J. Margriet; Couch, Fergus J.; Couper, David; Coviello, Andrea D.; Cox, Angela; Czene, Kamila; D'adamo, Adamo Pio; Smith, George Davey; De Vivo, Immaculata; Demerath, Ellen W.; Dennis, Joe; Devilee, Peter; Dieffenbach, Aida K.; Dunning, Alison M.; Eiriksdottir, Gudny; Eriksson, Johan G.; Fasching, Peter A.; Ferrucci, Luigi; Flesch-Janys, Dieter; Flyger, Henrik; Foroud, Tatiana; Franke, Lude; Garcia, Melissa E.; Garcia-Closas, Montserrat; Geller, Frank; de Geus, Eco E. J.; Giles, Graham G.; Gudbjartsson, Daniel F.; Gudnason, Vilmundur; Guenel, Pascal; Guo, Suiqun; Hall, Per; Hamann, Ute; Haring, Robin; Hartman, Catharina A.; Heath, AndrewC; Hofman, Albert; Hooning, Maartje J.; Hopper, John L.; Hu, Frank B.; Hunter, David J.; Karasik, David; Kiel, Douglas P.; Knight, Julia A.; Kosma, Veli-Matti; Kutalik, Zoltan; Lai, Sandra; Lambrechts, Diether; Lindblom, Annika; Maegi, Reedik; Magnusson, Patrik K.; Mannermaa, Arto; Martin, Nicholas G.; Masson, Gisli; McArdle, Patrick F.; McArdle, Wendy L.; Melbye, Mads; Michailidou, Kyriaki; Mihailov, Evelin; Milani, Lili; Milne, Roger L.; Nevanlinna, Heli; Neven, Patrick; Nohr, Ellen A.; Oldehinkel, Albertine J.; Oostra, Ben A.; Palotie, Aarno; Peacock, Munro; Pedersen, Nancy L.; Peterlongo, Paolo; Peto, Julian; Pharoah, Paul D. P.; Postma, Dirkje S.; Pouta, Anneli; Pylkaes, Katri; Radice, Paolo; Ring, Susan; Rivadeneira, Fernando; Robino, Antonietta; Rose, Lynda M.; Rudolph, Anja; Salomaa, Veikko; Sanna, Serena; Schlessinger, David; Schmidt, Marjanka K.; Southey, Mellissa C.; Sovio, Ulla; Stampfer, Meir J.; Stoeckl, Doris; Storniolo, Anna M.; Timpson, Nicholas J.; Tyrer, Jonathan; Visser, Jenny A.; Vollenweider, Peter; Voelzke, Henry; Waeber, Gerard; Waldenberger, Melanie; Wallaschofski, Henri; Wang, Qin; Willemsen, Gonneke; Winqvist, Robert; Wolffenbuttel, Bruce H. R.; Wright, Margaret J.; Boomsma, Dorret I.; Econs, Michael J.; Khaw, Kay-Tee; Loos, Ruth J. F.; McCarthy, Mark I.; Montgomery, Grant W.; Rice, John P.; Streeten, Elizabeth A.; Thorsteinsdottir, Unnur; van Duijn, Cornelia M.; Alizadeh, Behrooz Z.; Bergmann, Sven; Boerwinkle, Eric; Boyd, Heather A.; Crisponi, Laura; Gasparini, Paolo; Gieger, Christian; Harris, Tamara B.; Ingelsson, Erik; Jaervelin, Marjo-Riitta; Kraft, Peter; Lawlor, Debbie; Metspalu, Andres; Pennell, Craig E.; Ridker, Paul M.; Snieder, Harold; Sorensen, Thorkild I. A.; Spector, Tim D.; Strachan, David P.; Uitterlinden, Andre G.; Wareham, Nicholas J.; Widen, Elisabeth; Zygmunt, Marek; Murray, Anna; Easton, Douglas F.; Stefansson, Kari; Murabito, Joanne M.; Ong, Ken K.; Study, Australian Ovarian Canc; Network, GENICA; Study, kConFabt LifeLines Cohort; Consortium, InterAct; Consorti, Early Growth Genetics EGG.

    In: NATURE, Vol. 514, No. 7520, 2014, p. 92-97.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  177. Published
  178. Published

    Prehistoric genomes reveal the genetic foundation and cost of horse domestication. / Schubert, Mikkel; Jáónsson, Hákon; Chang, Dan; Der Sarkissian, Clio; Ermini, Luca; Ginolhac, Auráóélien; Albrechtsen, Anders; Dupanloup, Isabelle; Foucal, Adrien; Petersen, Bent; Fumagalli, Matteo; Raghavan, Maanasa; Seguin-Orlando, Andaine; Korneliussen, Thorfinn S.; Velazquez, Amhed M. V.; Stenderup, Jesper; Hoover, Cindi A.; Rubin, Carl-Johan; Alfarhan, Ahmed H.; Alquraishi, Saleh A.; Al-Rasheid, Khaled A. S.; MacHugh, David E.; Kalbfleisch, Ted; MacLeod, James N.; Rubin, Edward M.; Sicheritz-Pontén, Thomas; Andersson, Leif; Hofreiter, Michael; Marques-Bonet, Tomas; Gilbert, M. Thomas P.; Nielsen, Rasmus; Excoffier, Laurent; Willerslev, Eske; Shapiro, Beth; Orlando, Ludovic.

    In: Proceedings of the National Academy of Sciences, Vol. 111, No. 52, 1416991111, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  179. Published

    Pre‐natal undernutrition and post‐natal overnutrition are associated with permanent changes in hepatic metabolism markers and fatty acid composition in sheep. / Hou, L.; Hellgren, Lars; Kongsted, A. H.; Vaag, A.; Nielsen, M. O.

    In: Acta Physiologica (Print), Vol. 210, No. 2, 2014, p. 317-329.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  180. Published

    Probabilistic Determination of Native State Ensembles of Proteins. / Olsson, Simon; Vögeli, Beat Rolf; Cavalli, Andrea; Boomsma, Wouter; Ferkinghoff-Borg, Jesper; Lindorff-Larsen, Kresten; Hamelryck, Thomas.

    In: Journal of Chemical Theory and Computation, Vol. 10, No. 8, 2014, p. 3484-3491.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  181. Published

    Probe design for expression arrays using OligoWiz. / Wernersson, Rasmus.

    DNA Microarrays for Biomedical Research: Methods and Protocols. ed. / Martin Dufva. Vol. 529 Humana Press, 2014. p. 23-36 (Methods in Molecular Biology, Vol. 529).

    Publication: Research - peer-reviewBook chapter – Annual report year: 2009

  182. Published

    Proteome reference maps of the Lotus japonicus nodule and root. / Dam, Svend Secher; Dyrlund, Thomas F.; Ussatjuk, Anna; Jochimsen, Bjarne; Nielsen, Kasper; Goffard, Nicolas; Ventosa, Miguel; Lorentzen, Andrea; Gupta, Vikas; Andersen, Stig U. ; Enghild, Jan J.; Ronson, Clive W.; Roepstorff, Peter; Stougaard, Jens.

    In: Journal of Proteomics, Vol. 14, 2014, p. 230-240.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  183. Published
  184. Published
  185. Published
  186. Published

    Removal of the phage-shock protein PspB causes reduction of virulence in Salmonella enterica serovar Typhimurium independently of NRAMP1.. / Wallrodt, Inke; Jelsbak, Lotte; Thomsen, Line E.; Brix, Lena; Lemire, Sebastien; Gautier, Laurent; Nielsen, Dennis S.; Jovanovic, Goran; Buck, Martin; Olsen, John E.

    In: Journal of Medical Microbiology, Vol. 63, No. Pt 6, 2014, p. 788-795.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  187. Published
  188. Published

    RNA-protein interactions: an overview.. / Re, Angela; Joshi, Tejal; Kulberkyte, Eleonora; Morris, Quaid; Workman, Christopher.

    RNA Sequence, Structure, and Function: Computational and Bioinformatic Methods: Springer Protocols. Vol. 1097 2014. p. 491-521 (Methods in Molecular Biology, Vol. 1097).

    Publication: Research - peer-reviewBook chapter – Annual report year: 2014

  189. Published

    Robust Estimation of Diffusion-Optimized Ensembles for Enhanced Sampling. / Tian, Pengfei; Jónsson, Sigurdur Æ.; Ferkinghoff-Borg, Jesper; Krivov, Sergei V.; Lindorff-Larsen, Kresten; Irbäck, Anders; Boomsma, Wouter.

    In: Journal of Chemical Theory and Computation, Vol. 10, No. 2, 2014, p. 543-553.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  190. Published

    Size of quorum sensing communities. / Ferkinghoff-Borg, Jesper; Sams, Thomas.

    In: Molecular BioSystems, Vol. 10, No. 103, 2014, p. 103-109.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  191. Published
  192. Published

    Solid‐Phase Synthesis and Biological Evaluation of N‐Dipeptido L‐Homoserine Lactones as Quorum Sensing Activators. / Hansen, Mette Reimert; Le Quement, Sebastian Thordal; Jakobsen, Tim Holm; Skovstrup, Søren; Taboureau, Olivier ; Tolker‐Nielsen, Tim; Givskov, Michael Christian; Nielsen, Thomas Eiland.

    In: ChemBioChem, Vol. 15, No. 3, 2014, p. 460-465.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  193. Published

    Solving the Problem of Comparing Whole Bacterial Genomes across Different Sequencing Platforms. / Kaas, Rolf Sommer; Leekitcharoenphon, Pimlapas; Aarestrup, Frank Møller; Lund, Ole.

    In: PLOS ONE, Vol. 9, No. 8, e104984, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  194. Published

    Speciation with gene flow in equids despite extensive chromosomal plasticity. / Jáónsson, Hákon; Schubert, Mikkel; Seguin-Orlando, Andaine; Ginolhac, Auráóélien; Petersen, Lillian; Fumagalli, Matteo; Albrechtsen, Anders; Petersen, Bent; Korneliussen, Thorfinn S.; Vilstrup, Julia T.; Lear, Teri; Myka, Jennifer Leigh; Lundquist, Judith; Miller, Donald C.; Alfarhan, Ahmed H.; Alquraishi, Saleh A.; Al-Rasheid, Khaled A. S.; Stagegaard, Julia; Strauss, Gáóéünter; Bertelsen, Mads Frost; Sicheritz-Pontén, Thomas; Antczak, Douglas F.; Bailey, Ernest; Nielsen, Rasmus; Willerslev, Eske; Orlando, Ludovic.

    In: Proceedings of the National Academy of Sciences, Vol. 111, No. 52, 2014, p. 18655-18660.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  195. Published

    Studies on genetic diversity of bovine viral diarrhea viruses in Danish cattle herds. / Nagy, Abdou; Fahnøe, Ulrik; Rasmussen, Thomas Bruun; Uttenthal, Åse.

    In: Virus Genes, Vol. 48, No. 2, 2014, p. 376-380.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  196. Published

    Synthetic Promoter Library for Modulation of Actinorhodin Production in Streptomyces coelicolor A3(2). / Sohoni, Sujata Vijay; Fazio, Alessandro; Workman, Christopher; Mijakovic, Ivan; Eliasson Lantz, Anna.

    In: PLOS ONE, Vol. 9, No. 6, e99701, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  197. Published

    Systematic Evaluation of the Prognostic Impact and Intratumour Heterogeneity of Clear Cell Renal Cell Carcinoma Biomarkers. / Gulati, Sakshi; Martinez, Pierre; Joshi, Tejal; Birkbak, Nicolai Juul; Santos, Claudio R.; Rowan, Andrew J.; Pickering, Lisa; Gore, Martin; Larkin, James; Szallasi, Zoltan Imre; Bates, Paul A.; Swanton, Charles; Gerlinger, Marco.

    In: European Urology, Vol. 66, No. 5, 2014, p. 936-948.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  198. Published

    Targeting the genetic complexity within adapting RNA virus populations. / Fahnøe, Ulrik; Pedersen, Anders Gorm (Supervisor); Rasmussen, Thomas Bruun (Main supervisor).

    Technical University of Denmark, 2014. 160 p.

    Publication: ResearchPh.D. thesis – Annual report year: 2015

  199. Published

    T-bet and Eomes Are Differentially Linked to the Exhausted Phenotype of CD8+T Cells in HIV Infection. / Buggert, Marcus; Tauriainen, Johanna; Yamamoto, Takuya; Frederiksen, Juliet Wairimu; Ivarsson, Martin A.; Michaelsson, Jakob; Lund, Ole; Hejdeman, Bo; Jansson, Marianne; Sonnerborg, Anders; Koup, Richard A.; Betts, Michael R.; Karlsson, Annika C.

    In: P L o S Pathogens, Vol. 10, No. 7, e1004251, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  200. Published

    Temporal disease trajectories condensed from population-wide registry data covering 6.2 million patients. / Jensen, Anders Boeck; Moseley, Pope; Oprea, Tudor; Ellesøe, Sabrina Gade; Eriksson, Robert; Schmock, Henriette; Jensen, Peter Bjødstrup; Jensen, Lars Juhl; Brunak, Søren.

    In: Nature Communications, Vol. 5, 4022, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  201. Published

    The comparison of thrombocytosis and platelet-lymphocyte ratio as potential prognostic markers in colorectal cancer. / Baranyai, Zsolt; Krzystanek, Marcin; Josa, Valeria; Dede, Kristof; Ágoston, E.; Szasz, A. Marcell; Sinko, Daniel; Szarvas, Viktor; Salamon, Ferenc; Eklund, Aron Charles; Szallasi, Zoltan Imre; Jakab, Ferenc.

    In: Thrombosis and Haemostasis, Vol. 111, No. 3, 2014, p. 483-490.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  202. Published

    The effect of a short-term high-fat overfeeding on plasma levels of amino acids in young, healthy men with low or normal birth weight. / Ribel-Madsen, Amalie; Hellgren, Lars; Brøns , Charlotte; Ribel-Madsen , Rasmus; B. Newgard , Christopher; A. Vaag , Allan.

    2014. Abstract from Power of Programming Conference 2014, Munich, Germany.

    Publication: Research - peer-reviewConference abstract for conference – Annual report year: 2014

  203. Published

    The effect of a short-term high-fat overfeeding on plasma levels of amino acids in young, healthy men with low or normal birth weight. / Ribel-Madsen, Amalie; Hellgren, Lars; Brøns , Charlotte; Ribel-Madsen , Rasmus; B. Newgard , Christopher; A. Vaag , Allan.

    2014. Abstract from The 11th Biennial ISSFAL Congress 2014, Stockholm, Sweden.

    Publication: Research - peer-reviewConference abstract for conference – Annual report year: 2014

  204. Published

    The genetic prehistory of the New World Arctic. / Raghavan, Maanasa; DeGiorgio, Michael; Albrechtsen, Anders; Moltke, Ida; Skoglund, Pontus; Korneliussen, Thorfinn S.; Grønnow, Bjarne; Appelt, Martin; Gulløv, Hans Christian; Friesen, T. Max; Fitzhugh, William; Malmström, Helena; Rasmussen, Simon; Olsen, Jesper; Melchior, Linea; Fuller, Benjamin T.; Fahrni, Simon M.; Stafford, Thomas; Grimes, Vaughan; Renouf, M. A. Priscilla; Cybulski, Jerome; Lynnerup, Niels; Lahr, Marta Mirazon; Britton, Kate; Knecht, Rick; Arneborg, Jette; Metspalu, Mait; Cornejo, Omar E.; Malaspinas, Anna-Sapfo; Wang, Yong; Rasmussen, Morten; Raghavan, Vibha; Hansen, Thomas V. O.; Khusnutdinova, Elza; Pierre, Tracey; Dneprovsky, Kirill; Andreasen, Claus; Lange, Hans; Hayes, M. Geoffrey; Coltrain, Joan; Spitsyn, Victor A.; Gotherstrom, Anders; Orlando, Ludovic; Kivisild, Toomas; Villems, Richard; Crawford, Michael H.; Nielsen, Finn C.; Dissing, Jørgen; Heinemeier, Jan; Meldgaard, Morten; Bustamante, Carlos; O'Rourke, Dennis H.; Jakobsson, Mattias; Gilbert, M. Thomas P.; Nielsen, Rasmus; Willerslev, Eske.

    In: Science, Vol. 345, No. 6200, 1255832, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  205. Published

    The genome of a Late Pleistocene human from a Clovis burial site in western Montana.. / Rasmussen, Morten; Anzick, Sarah L.; Waters, Michael R; Skoglund, Pontus; DeGiorgio, Michael; Stafford, Thomas W, Jr; Rasmussen, Simon; Moltke, Ida; Albrechtsen, Anders; Doyle, Shane M; Poznik, G David; Gudmundsdottir, Valborg; Yadav, Rachita; Malaspinas, Anna Sapfo; White, Samuel Stockton, 5th; Allentoft, Morten Erik; Cornejo, Omar E.; Tambets, Kristiina; Eriksson, Anders; Heintzman, Peter D.; Karmin, Monika; Korneliussen, Thorfinn Sand; Meltzer, David J.; Pierre, Tracey Lynn; Stenderup, Jesper; Saag, Lauri; Warmuth, Vera M; Lopes, Margarida C; Malhi, Ripan S.; Brunak, Søren; Sicheritz-Pontén, Thomas; Barnes, Ian; Collins, Matthew; Orlando, Ludovic Antoine Alexandre; Balloux, Francois; Manica, Andrea; Gupta, Ramneek; Metspalu, Mait; Bustamante, Carlos D; Jakobsson, Mattias; Nielsen, Rasmus; Willerslev, Eske.

    In: Nature, Vol. 506, No. 7487, 2014, p. 225-229.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  206. Published

    The Genome of the Chicken DT40 Bursal Lymphoma Cell Line. / Molnar, Janos; Poti, Adam; Pipek, Orsolya; Krzystanek, Marcin; Kanu, Nnennaya; Swanton, Charles; Tusnady, Gabor E.; Szallasi, Zoltan Imre; Csabai, Istvan; Szuets, David.

    In: G3: Genes, Genomes, Genetics (Bethesda), Vol. 4, No. 11, 2014, p. 2231-2240.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  207. Published

    The microbiome of New World vultures. / Roggenbuck, Michael; Schnell, Ida Baerholm; Blom, Nikolaj; Bælum, Jacob; Bertelsen, Mads Frost; Sicheritz-Pontén, Thomas; Sørensen, Søren Johannes; Gilbert, M. Thomas P.; Graves, Gary R.; Hansen, Lars Henrik.

    In: Nature Communications, Vol. 5, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  208. Published

    The Role of Extracellular Matrix Quality in Pulmonary Fibrosis. / Kristensen, Jacob Hull; Karsdal, Morten Asser; Genovese, Federica; Johnson, Simon; Svensson, Birte; Jacobsen, Susanne; Hägglund, Per; Leeming, Diana Julie.

    In: Respiration (English Edition), Vol. 88, No. 6, 2014, p. 487-499.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  209. Published

    The Role of the st313-td Gene in Virulence of Salmonella Typhimurium ST313. / Herrero-Fresno, Ana; Wallrodt, Inke; Leekitcharoenphon, Pimlapas; Olsen, John Elmerdahl; Aarestrup, Frank Møller; Hendriksen, Rene S.

    In: PLOS ONE, Vol. 9, No. 1, e84566, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  210. Published

    The transcriptome of corona radiata cells from individual MII oocytes that after ICSI developed to embryos selected for transfer: PCOS women compared to healthy women. / Wissing, Marie Louise ; Sonne, Si Brask; Westergaard, David; Nguyen Do, Khoa; Belling, Kirstine C.; Høst, Thomas ; Mikkelsen, Anne Lis .

    In: Journal of Ovarian Research, Vol. 7, No. 110, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  211. Published

    Tolerance of Whole-Genome Doubling Propagates Chromosomal Instability and Accelerates Cancer Genome Evolution. / Dewhurst, Sally M.; McGranahan, Nicholas; Burrell, Rebecca A.; Rowan, Andrew J.; Grönroos, Eva; Endesfelder, David; Joshi, Tejal; Mouradov, Dmitri; Gibbs, Peter; Ward, Robyn L.; Hawkins, Nicholas J.; Szallasi, Zoltan Imre; Sieber, Oliver M.; Swanton, Charles.

    In: Cancer Discovery, Vol. 4, No. 2, 2014, p. 175-185.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  212. Published

    Tracking Genomic Cancer Evolution for Precision Medicine: The Lung TRACERx Study. / Jamal-Hanjani, Mariam; Hackshaw, Alan; Ngai, Yenting; Shaw, Jacqueline; Dive, Caroline; Quezada, Sergio; Middleton, Gary; de Bruin, Elza; Le Quesne, John; Shafi, Seema; Falzon, Mary; Horswell, Stuart; Blackhall, Fiona; Khan, Iftekhar; Janes, Sam; Nicolson, Marianne; Lawrence, David; Forster, Martin; Fennell, Dean; Lee, Siow-Ming; Lester, Jason; Kerr, Keith; Muller, Salli; Iles, Natasha; Smith, Sean; Murugaesu, Nirupa; Mitter, Richard; Salm, Max; Stuart, Aengus; Matthews, Nik; Adams, Haydn; Ahmad, Tanya; Attanoos, Richard; Bennett, Jonathan; Birkbak, Nicolai Juul; Booton, Richard; Brady, Ged; Buchan, Keith; Capitano, Arrigo; Chetty, Mahendran; Cobbold, Mark; Crosbie, Philip; Davies, Helen; Denison, Alan; Djearman, Madhav; Goldman, Jacki; Haswell, Tom; Joseph, Leena; Kornaszewska, Malgorzata; Krebs, Matthew; Langman, Gerald; MacKenzie, Mairead; Millar, Joy; Morgan, Bruno; Naidu, Babu; Nonaka, Daisuke; Peggs, Karl; Pritchard, Catrin; Remmen, Hardy; Rowan, Andrew; Shah, Rajesh; Smith, Elaine; Summers, Yvonne; Taylor, Magali; Veeriah, Selvaraju; Waller, David; Wilcox, Ben; Wilcox, Maggie; Woolhouse, Ian; McGranahan, Nicholas; Swanton, Charles.

    In: P L o S Biology, Vol. 12, No. 7, e1001906, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  213. Published

    Two ancient human genomes reveal Polynesian ancestry among the indigenous Botocudos of Brazil. / Malaspinas, Anna-Sapfo; Lao, Oscar; Schroeder, Hannes; Rasmussen, Morten; Raghavan, Maanasa; Moltke, Ida; Campos, Paula F.; Sagredo, Francisca Santana; Rasmussen, Simon; Gonçalves, Vanessa F.; Albrechtsen, Anders; Allentoft, Morten E.; Stenderup, Jesper; Moreno-Mayar, J. Victor; Brunak, Søren; Sicheritz-Pontén, Thomas; Orlando, Ludovic; Nielsen, Rasmus; Heinemeier, Jan; Olsen, Jesper; Willerslev, Eske.

    In: Current Biology, Vol. 24, No. 21, 2014, p. R1035-R1037.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  214. Published

    Two randomized cross-over trials assessing the impact of dietary gluten or wholegrain on the gut microbiome and host metabolic health. / Ibrügger, Sabine; Gøbel, Rikke Juul; Vestergaard, Henrik; Licht, Tine Rask; Frøkiær, Hanne; Linneberg, Allan René; Hansen, Torben; Gupta, Ramneek; Pedersen, Oluf Borbye; Bredal, Mette ; Lauritzen, Lotte.

    In: Journal of Clinical Trials, Vol. 4, No. 4, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  215. Published

    Uncovering the Peptide-Binding Specificities of HLA-C: A General Strategy To Determine the Specificity of Any MHC Class I Molecule. / Rasmussen, Michael; Harndahl, Mikkel; Stryhn, Anette; Boucherma, Rachid; Nielsen, Lise Lotte; Lemonnier, François A.; Nielsen, Morten; Buus, Søren.

    In: Journal of Immunology, Vol. 193, No. 10, 2014, p. 4790-4802.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  216. Published

    Upper Palaeolithic Siberian genome reveals dual ancestry of Native Americans. / Raghavan, Maanasa; Skoglund, Pontus; Graf, Kelly E.; Metspalu, Mait; Albrechtsen, Anders; Moltke, Ida; Rasmussen, Simon; Stafford jr., Thomas; Orlando, Ludovic Antoine Alexandre; Metspalu, Ene; Karmin, Monika; Tambets, Kristiina; Rootsi, Siiri; Mägi, Reedik; Campos, Paula; Balanovska, Elena; Balanovsky, Oleg; Khusnutdinova, Elza; Litvinov, Sergey; Osipova, Ludmila P; Fedorova, Sardana A; Voevoda, Mikhail I; Degiorgio, Michael; Sicheritz-Pontén, Thomas; Brunak, Søren; Demeshchenko, Svetlana; Kivisild, Toomas; Villems, Richard; Nielsen, Rasmus; Jakobsson, Mattias; Willerslev, Eske.

    In: Nature, Vol. 505, No. 7481, 2014, p. 87–91.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  217. Published

    Use of "one-pot, mix-and-read" peptide-MHC class I tetramers and predictive algorithms to improve detection of cytotoxic T lymphocyte responses in cattle. / Svitek, Nicholas; Hansen, Andreas Martin; Steinaa, Lucilla; Saya, Rosemary; Awino, Elias; Nielsen, Morten; Buus, Søren; Nene, Vishvanath.

    In: Veterinary Research, Vol. 45, No. 1, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  218. Published

    Vibrio chromosome-specific families. / Lukjancenko, Oksana; Ussery, David.

    In: Frontiers in Microbiology, Vol. 5, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  219. Published

    Whole-genome analyses resolve early branches in the tree of life of modern birds. / Sicheritz-Pontén, Thomas; Li, Cai; Li, Bo; Munch, Kasper ; Schierup, Mikkel H; Bertelsen, Mads Frost ; Fjeldsa, Jon ; Jønsson, Knud Andreas; Wang, Jun; Willerslev, Eske; Petersen, Bent.

    In: Science, Vol. 346, No. 6215, 2014, p. 1320-1331.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  220. Published

    Whole Genome Epidemiological Typing of Salmonella. / Leekitcharoenphon, Pimlapas; Aarestrup, Frank Møller (Main supervisor); Lund, Ole (Supervisor); Ussery, David (Supervisor).

    National Food Institute, 2014. 112 p.

    Publication: ResearchPh.D. thesis – Annual report year: 2014

  221. 2013
  222. Published

    31P gain of chromosomal region 15q26 cause increased expression of blm and fanci, and is associated with sensitivity to platinum chemotherapy in triple negative breast cancer. / Birkbak, Nicolai Juul; Li, Y.; Bowman-Collin, C.; Iglehart, J.D.; Silver, D.; Wang, Z.C.; Szallasi, Zoltan Imre; Richardson, A.

    In: Annals of Oncology, Vol. 24, No. suppl 3, 2013, p. iii22.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  223. Published
  224. Published
  225. Published

    A computational approach to chemical etiologies of diabetes.. / Audouze, Karine Marie Laure; Brunak, Søren; Grandjean, Philippe.

    In: Scientific Reports, Vol. 3, 2013, p. 2712.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  226. Published
  227. Published

    Adipose tissue trans fatty acids and changes in body weight and waist circumference. / Hansen, C.P.; Berentzen, T.L.; Østergaard, J.N.; Dahm, C.C.; Hellgren, Lars; Schmidt, E.B.; Tjønneland, A.; Sørensen, T.I.A.; Overvad, K.; Jakobsen, M.U.

    2013. Abstract from European Congress on Obesity 2013, Liverpool, United Kingdom.

    Publication: Research - peer-reviewConference abstract for conference – Annual report year: 2013

  228. Published
  229. Published

    Amino Acid Usage Is Asymmetrically Biased in AT- and GC-Rich Microbial Genomes.. / Bohlin, Jon; Brynildsrud, Ola Brønstad; Vesth, Tammi Camilla; Skjerve, Eystein; Ussery, David.

    In: PLoS ONE, Vol. 8, No. 7, e69878, 2013.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  230. Published

    Analyzing Plasmodium falciparum erythrocyte membrane protein 1 gene expression by a next generation sequencing based method. / Jespersen, Jakob S.; Petersen, Bent; Seguin-Orlando, Andaine; Willerslev, Eske; Gilbert, M. Thomas P.; Lusingu, John; Theander, Thor G.; Lavstsen, Thomas.

    The nature of parasitism: Joint Spring Symposium 2013, Danish Society for Parasitology and Danish Society for Tropical Medicine & International Health. 2013. p. 8.

    Publication: Research - peer-reviewConference abstract in proceedings – Annual report year: 2013

  231. Published

    Analyzing Plasmodium falciparum erythrocyte membrane protein 1 gene expression by a next-generation-sequencing based method. / Jespersen, Jakob S.; Petersen, Bent; Seguin-Orlando, Andaine; Willerslev, Eske; Thomas, M.; Gilbert, P.; Lusingu, John; Theander, Thor G.; Lavstsen, Thomas.

    In: Tropical Medicine & International Health, Vol. 18, No. Supplement 1 , 2013, p. 67-67.

    Publication: Research - peer-reviewConference abstract in journal – Annual report year: 2013

  232. Published

    A Nondegenerate Code of Deleterious Variants in Mendelian Loci Contributes to Complex Disease Risk. / Blair, David R.; Lyttle, Christopher S.; Mortensen, Jonathan M.; Bearden, Charles F.; Jensen, Anders Boeck; Khiabanian, Hossein; Melamed, Rachel; Rabadan, Raul; Bernstam, Elmer V.; Brunak, Søren; Jensen, Lars Juhl; Nicolae, Dan; Shah, Nigam H.; Grossman, Robert L.; Cox, Nancy J.; White, Kevin P.; Rzhetsky, Andrey.

    In: Cell, Vol. 155, No. 1, 2013, p. 70-80.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  233. Published

    A Novel Domain Cassette Identifies Plasmodium falciparum PfEMP1 Proteins Binding ICAM-1 and Is a Target of Cross-Reactive, Adhesion-Inhibitory Antibodies. / Bengtsson, Anja; Jørgensen, Louise; Rask, Thomas Salhøj; Olsen, Rebecca W.; Andersen, Marianne A.; Turner, Louise; Theander, Thor G.; Hviid, Lars; Higgins, Matthew K.; Craig, Alister; Brown, Alan; Jensen, Anja T. R.

    In: Journal of Immunology, Vol. 190, No. 1, 2013, p. 240-249.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  234. Published

    ATAF1 transcription factor directly regulates abscisic acid biosynthetic gene NCED3 in Arabidopsis thaliana.. / Jensen, Michael Krogh; Lindemose, Søren; De Masi, Federico; Reimer, Julia J; Nielsen, Michael; Perera, Venura; Workman, Christopher; Turck, Franziska; Grant, Murray R; Mundy, John; Petersen, Morten; Skriver, Karen.

    In: FEBS Open Bio, Vol. 3, 2013, p. 321-327.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  235. Published

    Ataxia, Dementia, and Hypogonadotropism Caused by Disordered Ubiquitination. / Margolin, David H.; Kousi, Maria; Chan, Yee-Ming; Lim, Elaine T.; Schmahmann, Jeremy D.; Hadjivassiliou, Marios; Hall, Janet E.; Adam, Ibrahim; Dwyer, Andrew; Plummer, Lacey; Aldrin, Stephanie V.; O'Rourke, Julia; Kirby, Andrew; Hansen, Kasper Lage; Milunsky, Aubrey; Milunsky, Jeff M.; Chan, Jennifer; Hedley-Whyte, E. Tessa; Daly, Mark J.; Katsanis, Nicholas; Seminara, Stephanie B.

    In: New England Journal of Medicine, Vol. 368, No. 21, 2013, p. 1992-2003.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  236. Published

    A Unified Model of the GABA(A) Receptor Comprising Agonist and Benzodiazepine Binding Sites. / Kongsbak, Kristine Grønning; Bergmann, Rikke; Sørensen, Pernille Louise; Sander, Tommy; Balle, Thomas.

    In: P L o S One, Vol. 8, No. 1, 2013, p. e52323.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  237. Published

    Bacterial natural transformation by highly fragmented and damaged DNA.. / Overballe-Petersen, Søren; Harms, Klaus; Orlando, Ludovic Antoine Alexandre; Mayar, J. Victor Moreno; Rasmussen, Simon; Dahl, Tais Wittchen; Rosing, Minik Thorleif; Poole, Anthony M; Sicheritz-Pontén, Thomas; Brunak, Søren; Inselmann, Sabrina; de Vries, Johann; Wackernagel, Wilfried; Pybus, Oliver G; Nielsen, Rasmus; Johnsen, Pål Jarle; Nielsen, Kaare Magne; Willerslev, Eske.

    In: Proceedings of the National Academy of Sciences of the United States of America, Vol. 110, No. 49, 2013, p. 19860-19865.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  238. Published

    Biasogram: visualization of confounding technical bias in gene expression data.. / Krzystanek, Marcin; Szallasi, Zoltan Imre; Eklund, Aron Charles.

    In: P L o S One, Vol. 8, No. 4, 2013, p. e61872.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  239. Published
  240. Published

    Bioinformatics Identification of Antigenic Peptide: Predicting the Specificity of Major MHC Class I and II Pathway Players.. / Lund, Ole; Karosiene, Edita; Lundegaard, Claus; Larsen, Mette Voldby; Nielsen, Morten.

    Antigen Processing : Methods and Protocols. 2013. p. 247-260 (Methods in Molecular Biology, Vol. 960).

    Publication: Research - peer-reviewBook chapter – Annual report year: 2013

  241. Published

    Bioprospecting and Functional Analysis of Neglected Environments. / Vogt, Josef Korbinian; Sicheritz-Pontén, Thomas (Main supervisor).

    Technical University of Denmark, 2013. 150 p.

    Publication: ResearchPh.D. thesis – Annual report year: 2014

  242. Published

    BlockLogo: Visualization of peptide and sequence motif conservation. / Olsen, Lars Rønn; Kudahl, Ulrich Johan; Simon, Christian; Sun, Jing; Schönbach, Christian; Reinherz, Ellis L.; Zhang, Guang Lan; Brusic, Vladimir.

    In: Journal of Immunological Methods, Vol. 400-401, 2013, p. 37-44.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  243. Published

    Cancer signaling networks and their implications for personalized medicine. / Creixell, Pau; Linding, Rune (Main supervisor).

    Kgs. Lyngby : Technical University of Denmark, 2013. 113 p.

    Publication: ResearchPh.D. thesis – Annual report year: 2013

  244. Published
  245. Published

    ChemProt: A disease chemical biology database. / Taboureau, Olivier ; Oprea, Tudor I.

    Computational Chemogenomics. Pan Stanford Publishing, 2013.

    Publication: Research - peer-reviewBook chapter – Annual report year: 2013

  246. Published

    CMG-Biotools, a Free Workbench for Basic Comparative Microbial Genomics.. / Vesth, Tammi Camilla; Lagesen, Karin; Acar, Öncel; Ussery, David.

    In: P L o S One, Vol. 8, No. 4, 2013, p. e60120.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  247. Published

    Colorectal cancer cell lines made resistant to SN38-and Oxaliplatin: Roles of altered ion transporter function in resistance?. / Sandra, Christensen; Jensen, Niels Frank; Stoeckel, Johanne Danmark; Belling, Kirstine C.; Romer, Maria Unni; Gupta, Ramneek; Brunner, Nils; Pedersen, Stine Helene Falsig; Stenvang, Jan.

    In: F A S E B Journal, Vol. 27, lb452, 2013.

    Publication: Research - peer-reviewConference abstract in journal – Annual report year: 2013

  248. Published

    Comparison of two Next Generation sequencing platforms for full genome sequencing of Classical Swine Fever Virus. / Fahnøe, Ulrik; Pedersen, Anders Gorm; Höper, Dirk; Beer, Martin; Rasmussen, Thomas Bruun.

    ABSTRACTS: 7th Annual Meeting EPIZONE. 2013. p. 124 D 2.

    Publication: Research - peer-reviewConference abstract in proceedings – Annual report year: 2013

  249. Published

    Comparison of typing by whole genome sequencing (WGS) and pulsed field gel electrophoresis (PFGE) of isolates from a hospital outbreak with a CTX-M-15 producing Klebsiella pneumoniae. / Hansen, D. S.; Kaas, Rolf Sommer; Nielsen, E. M.; Aarestrup, Frank Møller; Hasman, Henrik.

    10th International Meeting on Microbial Epidemiological Markers (IMMEM-10) - Abstract Book. Paris, France, 2013. p. 154.

    Publication: Research - peer-reviewConference abstract in proceedings – Annual report year: 2013

  250. Published

    Complete genes may pass from food to human blood. / Spisák, Sándor; Solymosi, Norbert; Ittzés, Péter; Bodor, András; Kondor, Dániel; Vattay, Gábor; Barták, Barbara K; Sipos, Ferenc; Galamb, Orsolya; Tulassay, Zsolt; Szállási, Zoltán; Rasmussen, Simon; Sicheritz-Ponten, Thomas; Brunak, Søren; Molnár, Béla; Csabai, István.

    In: PloS one., Vol. 8, No. 7, e69805, 2013, p. 11.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  251. Published

    Computational approaches to identify functional genetic variants in cancer genomes.. / Gonzalez-Perez, Abel; Mustonen, Ville; Reva, Boris; Ritchie, Graham R S; Creixell, Pau; Karchin, Rachel; Vazquez, Miguel; Fink, J Lynn; Kassahn, Karin S; Pearson, John V; Bader, Gary D; Boutros, Paul C; Muthuswamy, Lakshmi; Ouellette, B F Francis; Reimand, Jüri; Linding, Rune; Shibata, Tatsuhiro; Valencia, Alfonso; Butler, Adam; Dronov, Serge; Flicek, Paul; Shannon, Nick B; Carter, Hannah; Ding, Li; Sander, Chris; Stuart, Josh M; Stein, Lincoln D; Lopez-Bigas, Nuria.

    In: Nature Methods, Vol. 10, No. 8, 2013, p. 723-729.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  252. Published

    Computational optimisation of targeted DNA sequencing for cancer detection.. / Martinez, Pierre; McGranahan, Nicholas; Birkbak, Nicolai Juul; Gerlinger, Marco; Swanton, Charles.

    In: Scientific Reports, Vol. 3, 2013, p. 3309.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  253. Published

    Concordance of gene expression in human protein complexes reveals tissue specificity and pathology. / Börnigen, Daniela; Pers, Tune Hannes; Thorrez, Lieven; Huttenhower, Curtis; Moreau, Yves; Brunak, Søren.

    In: Nucleic Acids Research, Vol. 41, No. 18, e171, 2013.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  254. Published

    Content and distribution of phytanic acid diastereomers in organic milk as affected by feed composition. / Che, Brita Ngum; Kristensen, Troels; Nebel, Caroline; Dalsgaard, Trine; Hellgren, Lars; Young, Jette Feveile; Larsen, Mette K.

    In: Journal of Agricultural and Food Chemistry, Vol. 61, No. 1, 2013, p. 225-230.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  255. Published
  256. Published

    Deconvoluting complex tissues for expression quantitative trait locus-based analyses. / Seo, Ji-Heui; Li, Qiyuan; Fatima, Aquila; Eklund, Aron Charles; Szallasi, Zoltan Imre; Polyak, Kornelia; Richardson, Andrea L.; Freedman, Matthew L.

    In: Royal Society of London. Philosophical Transactions B. Biological Sciences, Vol. 368, No. 1620, 2013, p. 20120363-20120363.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  257. Published

    Deep phenotyping of the unselected COPSAC2010 birth cohort study. / Bisgaard, Hans Flinker; Vissing, Nadja Hawwa; Carson, C. G.; Bischoff, Anne Louise; Følsgaard, Nilofar Vahman; Kreiner‐Møller, E.; Chawes, Bo Lund Krogsgaard; Stokholm, J.; Pedersen, L.; Bjarnadóttir, E.; Thysen, Anna Hammerich; Nilsson, E.; Mortensen, L. J.; Olsen, S. F.; Schjørring, S.; Krogfelt, Karen Angeliki; Lauritzen, L.; Pedersen, Susanne Brix; Bønnelykke, K.

    In: Clinical & Experimental Allergy, Vol. 43, No. 12, 2013, p. 1384-1394.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  258. Published

    Detection of serological biomarkers by proximity extension assay for detection of colorectal neoplasias in symptomatic individuals. / Buch Thorsen, Stine ; Lundberg, Martin ; Villablanca, Andrea ; Christensen, Sarah Louise T.; Belling, Kirstine C.; Sander Nielsen, Birgitte ; Knowles, Mick ; Gee, Nick; Nielsen, Hans Jørgen ; Brünner, Nils; Jarle Christensen, Ib ; Fredriksson, Simon ; Stenvang, Jan ; Assarsson, Erika.

    In: Journal of Translational Medicine, Vol. 11, 253, 2013.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  259. Published
  260. Published
  261. Published

    Discovery of a novel selective PPARγ ligand with partial agonist binding properties by integrated in silico / in vitro work flow. / Kouskoumvekaki, Irene; Petersen, Rasmus K.; Fratev, Filip Filipov ; Taboureau, Olivier ; Nielsen, Thomas Eiland; Oprea, Tudor; Sonne, Si Brask; Flindt, Esben N.; Jonsdottir, Svava Osk; Kristiansen, Karsten.

    In: Journal of Chemical Information and Modeling, Vol. 53, No. 4, 2013, p. 923-937.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  262. Published

    Docosahexaenoic acid status at 9 months is inversely associated with communicative skills in 3-year-old girls. / Engel, Sara; Tronhjem, Kathrine Marie Hagerup; Hellgren, Lars; Michaelsen, Kim F.; Lauritzen, Lotte.

    In: Maternal and Child Nutrition, Vol. 9, No. 4, 2013, p. 499-510.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  263. Published

    Effect of gestation on obesity-induced hepatic and placental inflammation in mice. / Ingvorsen, Camilla; Thysen, Anna Hammerich; Fernandez-Twinn , Denise ; Ozanne, Susan E.; Pedersen, Susanne Brix; Hellgren, Lars.

    2013. Abstract from Abcam Symposium: Programming Obesity, Cambridge, United Kingdom.

    Publication: Research - peer-reviewConference abstract for conference – Annual report year: 2013

  264. Published

    Effects of butter from mountain-pasture grazing cows on risk markers of the metabolic syndrome compared with conventional Danish butter: a randomized controlled study.. / Werner, Louise Bruun; Hellgren, Lars; Raff, Marianne; Jensen, Søren K.; Petersen, Rikke A.; Drachmann, Tue; Tholstrup, Tine.

    In: Lipids in Health and Disease, Vol. 12, No. 99, 2013.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  265. Published

    Effects of maternal energy intake during gestation and lactation on leptin levels in the young and adult pups. / Ingvorsen, Camilla; Hellgren, Lars.

    2013. Abstract from Annual meeting in Dansk Selskab for Adipositasforskning, Odense, Denmark.

    Publication: Research - peer-reviewConference abstract for conference – Annual report year: 2013

  266. Published
  267. Published

    Emerging trends in the discovery of natural product antibacterials. / Bologa, Cristian G; Ursu, Oleg; Oprea, Tudor; Melançon, Charles E, III; Tegos, George P.

    In: Current Opinion in Pharmacology, Vol. 13, No. 5, 2013, p. 678-687.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  268. Published

    NetMHCIIpan-3.0, a common pan-specific MHC class II prediction method including all three human MHC class II isotypes, HLA-DR, HLA-DP and HLA-DQ. / Karosiene, Edita; Rasmussen, Michael; Blicher, Thomas; Lund, Ole; Buus, S.; Nielsen, Morten Munch.

    In: Immunogenetics, Vol. 65, No. 10, 2013, p. 711-724.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  269. Published
  270. Published

    Epitope prediction methods. / Karosiene, Edita; Nielsen, Morten (Main supervisor); Lund, Ole (Supervisor).

    Kgs. Lyngby : Technical University of Denmark, 2013. 127 p.

    Publication: ResearchPh.D. thesis – Annual report year: 2013

  271. Published

    Evaluation of peptide selection approaches for epitope‐based vaccine design. / Schubert, B.; Lund, Ole; Nielsen, Morten.

    In: Tissue Antigens, Vol. 82, No. 4, 2013, p. 243–251.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  272. Published

    Exome mutation burden predicts clinical outcome in ovarian cancer carrying mutated BRCA1 and BRCA2 genes. / Birkbak, Nicolai Juul; Kochupurakkal, Bose; Gonzalez-Izarzugaza, Jose Maria; Li, Yang; Liu, Joyce; Szallasi, Zoltan Imre; Matulonis, Ursula; Richardson, Andrea L.; Iglehart, J. Dirk; Wang, Zhigang C.

    In: Cancer Research, Vol. 73, No. S1, 2013.

    Publication: Research - peer-reviewConference abstract in journal – Annual report year: 2014

  273. Published

    FADS genotype and diet are important determinants of DHA status: a cross-sectional study in Danish infants1-3. / Harsløf, Laurine Bente Schram; Larsen, Lesli Hingstrup; Ritz, Christian; Hellgren, Lars; Michaelsen, Kim Fleischer; Vogel, Ulla; Lauritzen, Lotte.

    In: American Journal of Clinical Nutrition, Vol. 97, No. 6, 2013, p. 1403-1410.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  274. Published

    From essential to persistent genes: a functional approach to constructing synthetic life. / Acevedo-Rocha, Carlos G.; Fang, Gang; Schmidt, Markus; Ussery, David; Danchin, Antoine.

    In: Trends in Genetics, Vol. 29, No. 5, 2013, p. 273-279.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  275. Published

    From viral genome to specific peptide epitopes: methods for identifying porcine T cell epitopes based on in silico predictions, in vitro identification and ex vivo verification. / Pedersen, Lasse Eggers; Rasmussen, Michael; Harndah, Mikkel; Patch, Jared; Nielsen, Morten; Buus, Søren; Golde, William; Jungersen, Gregers.

    In: Journal of Immunology, Vol. 190, 2013.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  276. Published

    Functional Similarities and Disparities in Inflammation-Promoting Abilities of Gut-Derived Escherichia coli Strains from Patients with Inflammatory Bowel Diseases and Healthy Individuals. / Jensen, Stina Rikke; Mirsepasi, H.; Thysen, A.H.; Brynskov, J.; Krogfelt, K.; Petersen, A. M.; Pedersen, A. E.; Pedersen, Susanne Brix.

    In: Scandinavian Journal of Immunology, Vol. 77, No. 4, 2013, p. 266-267.

    Publication: Research - peer-reviewConference abstract in journal – Annual report year: 2013

  277. Published

    Genetic and antigenic characterization of influenza A virus circulating in Danish swine during the past decade. / Fobian, Kristina; Kirk, Isa Kristina; Breum, Solvej Østergaard; Lewis, Nicola; Hjulsager, Charlotte Kristiane; Larsen, Lars Erik.

    2013. Abstract from Influenza2013, Oxford, United Kingdom.

    Publication: Research - peer-reviewConference abstract for conference – Annual report year: 2013

  278. Published

    Genome-scale cold stress response regulatory networks in ten Arabidopsis thaliana ecotypes. / Barah, Pankaj; Jayavelu, Naresh Doni; Rasmussen, Simon; Nielsen, Henrik Bjørn; Mundy, John; Bones, Atle M.

    In: BMC Genomics, Vol. 14, No. 1, 2013, p. 722.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  279. Published
  280. Published

    Genome-wide assessment of the association of rare and common copy number variations to testicular germ cell cancer.. / Edsgard, Stefan Daniel; Dalgaard, Marlene Danner; Weinhold, Nils; Wesolowska, Agata; Rajpert-De Meyts, Ewa; Ottesen, Anne Marie; Juul, Anders; Skakkebæk, Niels Erik; Jensen, Thomas Skøt; Gupta, Ramneek; Leffers, Henrik; Brunak, Søren.

    In: Frontiers in Endocrinology, Vol. 4, 2013.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  281. Published

    Genome-wide meta-analysis identifies new susceptibility loci for migraine.. / Anttila, Verneri; Winsvold, Bendik S; Gormley, Padhraig; Kurth, Tobias; Bettella, Francesco; McMahon, George; Kallela, Mikko; Malik, Rainer; de Vries, Boukje; Terwindt, Gisela; Medland, Sarah E; Todt, Unda; McArdle, Wendy L; Quaye, Lydia; Koiranen, Markku; Ikram, M Arfan; Lehtimäki, Terho; Stam, Anine H; Ligthart, Lannie; Wedenoja, Juho; Dunham, Ian; Neale, Benjamin M; Palta, Priit; Hamalainen, Eija; Schürks, Markus; Rose, Lynda M; Buring, Julie E; Ridker, Paul M; Steinberg, Stacy; Stefansson, Hreinn; Jakobsson, Finnbogi; Lawlor, Debbie A; Evans, David M; Ring, Susan M; Färkkilä, Markus; Artto, Ville; Kaunisto, Mari A; Freilinger, Tobias; Schoenen, Jean; Frants, Rune R; Pelzer, Nadine; Weller, Claudia M; Zielman, Ronald; Heath, Andrew C; Madden, Pamela A F; Montgomery, Grant W; Martin, Nicholas G; Borck, Guntram; Göbel, Hartmut; Heinze, Axel; Heinze-Kuhn, Katja; Williams, Frances M K; Hartikainen, Anna-Liisa; Pouta, Anneli; van den Ende, Joyce; Uitterlinden, Andre G; Hofman, Albert; Amin, Najaf; Hottenga, Jouke-Jan; Vink, Jacqueline M; Heikkilä, Kauko; Alexander, Michael; Muller-Myhsok, Bertram; Schreiber, Stefan; Meitinger, Thomas; Wichmann, Heinz Erich; Aromaa, Arpo; Eriksson, Johan G; Traynor, Bryan J; Trabzuni, Daniah; Rossin, Elizabeth; Hansen, Kasper Lage; Jacobs, Suzanne B R; Gibbs, J Raphael; Birney, Ewan; Kaprio, Jaakko; Penninx, Brenda W; Boomsma, Dorret I; van Duijn, Cornelia; Raitakari, Olli; Jarvelin, Marjo-Riitta; Zwart, John-Anker; Cherkas, Lynn; Strachan, David P; Kubisch, Christian; Ferrari, Michel D; van den Maagdenberg, Arn M J M; Dichgans, Martin; Wessman, Maija; Smith, George Davey; Stefansson, Kari; Daly, Mark J; Nyholt, Dale R; Chasman, Daniel I; Palotie, Aarno.

    In: Nature Genetics, Vol. 45, No. 8, 2013.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  282. Published
  283. Published
  284. Published

    Gestation reverses obesity-induced hepatic inflammation in mice. / Ingvorsen, Camilla; Thysen, Anna Hammerich; Fernandez-Twinn , Denise ; Ozanne, Susan E.; Pedersen, Susanne Brix; Hellgren, Lars.

    2013. Poster session presented at Joint Symposium of Centre for Fetal programming and Early Nutrition Consortium, Hellerup, Denmark.

    Publication: Research - peer-reviewPoster – Annual report year: 2013

  285. Published

    Gestation reverses obesity-induced hepatic inflammation in mice. / Ingvorsen, Camilla; Thysen, Anna Hammerich; Fernandez-Twinn , Denise ; Ozanne, Susan E.; Pedersen, Susanne Brix; Hellgren, Lars.

    In: Acta Obstetricia et Gynecologica Scandinavica, Vol. 92, No. SI 160, 2013, p. 19-20.

    Publication: Research - peer-reviewConference abstract in journal – Annual report year: 2013

  286. Published

    Global characterization of signalling networks associated with tamoxifen resistance in breast cancer. / Browne, Brigid C.; Hochgräfe, Falko; Wu, Jianmin; Millar, Ewan K. A.; Barraclough, Jane; Stone, Andrew; McCloy, Rachael A.; Lee, Christine S.; Roberts, Caroline; Ali, Naveid A.; Boulghourjian, Alice; Schmich, Fabian; Linding, Rune; Farrow, Lynn; Gee, Julia M. W.; Nicholson, Robert I.; O'Toole, Sandra A.; Sutherland, Robert L.; Musgrove, Elizabeth A.; Butt, Alison J.; Daly, Roger J.

    In: F E B S Journal, Vol. 280, No. 21, 2013, p. 5237-5257.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  287. Published

    Glucagon-Like Peptide-1 Protects Human Islets against Cytokine-Mediated β-Cell Dysfunction and Death: A Proteomic Study of the Pathways Involved. / Rondas, Dieter; Bugliani, Marco; D’Hertog, Wannes; Hansen, Kasper Lage; Masini, Mathilde; Waelkens, Etienne; Marchetti, Piero; Mathieu, Chantal; Overbergh, Lut.

    In: Journal of Proteome Research, Vol. 12, No. 9, 2013, p. 204193-4206.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  288. Published

    Gut Mucosal Regulation of Distinct Macrophage and Dendritic Cell Subsets During Early Stage Salmonella Infection. / Sørensen, Rikke Brandt; Petersen, A.; Larsen, Jeppe Madura; Licht, Tine Rask; Pedersen, Susanne Brix.

    In: Scandinavian Journal of Immunology, Vol. 77, No. 4, 2013, p. 262-263.

    Publication: Research - peer-reviewConference abstract in journal – Annual report year: 2013

  289. Published

    HELQ promotes RAD51 paralogue-dependent repair to avert germ cell loss and tumorigenesis. / Adelman, Carrie A.; Lolo, Rafal L.; Birkbak, Nicolai Juul; Murina, Olga; Matsuzaki, Kenichiro; Horejsi, Zuzana; Parmar, Kalindi; Borel, Valérie; Skehel, J. Mark; Stamp, Gordon; D'Andrea, Alan; Sartori, Alessandro A; Swanton, Charles; Boulton, Simon J.

    In: Nature, Vol. 502, 2013, p. 381-384.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  290. Published
  291. Published

    High-Mannose Glycosylation of Infectious HIV-1 gp120 and Immune Regulation in Human Plasmacytoid Dendritic Cells. / Søndergaard, Jonas Nørskov; Vinner, L.; Pedersen, Susanne Brix.

    In: Scandinavian Journal of Immunology, Vol. 77, No. 4, 2013, p. 264-265.

    Publication: Research - peer-reviewConference abstract in journal – Annual report year: 2013

  292. Published

    Identification of a novel immunoregulatory signaling pathway exploited by M. tuberculosis in dendritic cells. / Laursen, Janne Marie; Schoof, Erwin; Søndergaard, Jonas Nørskov; Linding, Rune; Pedersen, Susanne Brix.

    2013. Abstract from 15th International Congress of Immunology, Milan, Italy.

    Publication: Research - peer-reviewConference abstract for conference – Annual report year: 2013

  293. Published

    Identification of a novel immunoregulatory signaling pathway exploited by M. tuberculosis in dendritic cells. / Laursen, Janne Marie; Schoof, Erwin; Søndergaard, Jonas Nørskov; Linding, Rune; Pedersen, Susanne Brix.

    2013. Abstract from 14th International Conference on Systems Biology, Copenhagen, Denmark.

    Publication: Research - peer-reviewConference abstract for conference – Annual report year: 2013

  294. Published
  295. Published
  296. Published

    Identification of LasR Ligands through a Virtual Screening Approach. / Skovstrup, Søren; Le Quement, Sebastian Thordal; Hansen, Thomas; Jakobsen, Tim Holm; Harmsen, Morten; Tolker‐Nielsen, Tim; Nielsen, Thomas Eiland; Givskov, Michael Christian; Taboureau, Olivier .

    In: ChemMedChem, Vol. 8, No. 1, 2013, p. 157-163.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  297. Published

    Identification of peptides from foot‐and‐mouth disease virus structural proteins bound by class I swine leukocyte antigen (SLA) alleles, SLA‐1*0401 and SLA‐2*0401. / Pedersen, Lasse Eggers; Harndahl, M.; Nielsen, Morten; Patch, J. R.; Jungersen, Gregers; Buus, S.; Golde, W. T.

    In: Animal Genetics, Vol. 44, No. 3, 2013, p. 251-258.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  298. Published

    Identification of Y-Chromosomally Encoded Minor Histocompatibility Antigens Using a Reverse Immunology Approach. / Mortensen, Bo Kok; Brændstrup, Peter; Larsen, Malene Erup; Larsen, Mette Voldby; Lund, Ole; Rasmussen, Michael; Buus, Søren; Stryhn, Anette; Vindeløv, Lars.

    In: Biology of Blood and Marrow Transplantation, Vol. 19, No. 2, 2013, p. S335.

    Publication: Research - peer-reviewConference abstract in journal – Annual report year: 2013

  299. Published

    Identification of Y-Chromosomally Encoded Minor Histocompatibility Antigens Using a Reverse Immunology Approach. / Mortensen, Bo Kok; Brændstrup, Peter; Larsen, Malene Erup; Larsen, Mette Voldby; Lund, Ole; Rasmussen, Michael; Buus, Søren; Stryhn, Anette; Vindeløv, Lars.

    In: Scandinavian Journal of Immunology, Vol. 77, No. 4, 2013, p. 317-318.

    Publication: Research - peer-reviewConference abstract in journal – Annual report year: 2013

  300. Published

    Improving data and knowledge management to better integrate health care and research. / Cases, M.; Furlong, L. I.; Albanell, J.; Altman, R. B.; Bellazzi, R.; Boyer, S.; Brand, A.; Brookes, A. J.; Brunak, Søren; Clark, T.W.; Gea, J.; Ghazal, P.; Graf, N.; Guigó, R.; Klein, T. E.; López‐Bigas, N.; Maojo, V.; Mons, B.; Musen, M.; Oliveira, J. L.; Rowe, A.; Ruch, P.; Shabo, A.; Shortliffe, E. H.; Valencia, A.; Lei, J., van der; Mayer, M. A.; Sanz, F.

    In: Journal of Internal Medicine, Vol. 274, No. 4, 2013, p. 321-328.

    Publication: Research - peer-reviewEditorial – Annual report year: 2013

  301. Published

    Inconsistency in large pharmacogenomic studies. / Haibe-Kains, Benjamin; El-Hachem, Nehme; Birkbak, Nicolai Juul; Jin, Andrew C.; Beck, Andrew H; Aerts, Hugo J. W. L.; Quackenbush, John.

    In: Nature, Vol. 504, No. 7480, 2013, p. 389–393.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  302. Published

    In silico peptide-binding predictions of passerine MHC class I reveal similarities across distantly related species, suggesting convergence on the level of protein function. / Follin, Elna; Karlsson, Maria; Lundegaard, Claus; Nielsen, Morten; Wallin, Stefan; Paulsson, Kajsa Maria; Westerdahl, Helena.

    In: Immunogenetics, Vol. 65, No. 4, 2013, p. 299-311.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  303. Published

    Integrative Annotation of Variants from 1092 Humans: Application to Cancer Genomics. / Khurana, Ekta; Fu, Yao; Colonna, Vincenza; Mu, Xinmeng Jasmine; Kang, Hyun Min; Lappalainen, Tuuli; Sboner, Andrea; Lochovsky, Lucas; Chen, Jieming; Harmanci, Arif; Das, Jishnu; Abyzov, Alexej; Balasubramanian, Suganthi; Beal, Kathryn; Chakravarty, Dimple; Challis, Daniel; Chen, Yuan; Clarke, Declan; Clarke, Laura; Cunningham, Fiona; Evani, Uday S.; Flicek, Paul; Fragoza, Robert; Garrison, Erik; Gibbs, Richard; Gümüş, Zeynep H.; Herrero, Javier; Kitabayashi, Naoki; Kong, Yong; Lage, Kasper; Liluashvili, Vaja; Lipkin, Steven M.; MacArthur, Daniel G.; Marth, Gabor; Muzny, Donna; Pers, Tune Hannes; Ritchie, Graham R. S.; Rosenfeld, Jeffrey A.; Sisu, Cristina; Wei, Xiaomu; Wilson, Michael; Xue, Yali; Yu, Fuli; Dermitzakis, Emmanouil T.; Yu, Haiyuan; Rubin, Mark A.; Tyler-Smith, Chris; Gerstein, Mark.

    In: Science, Vol. 342, No. 6154, 1235587, 2013.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  304. Published

    Internet-Based Solutions for Analysis of Next-Generation Sequence Data. / Larsen, Mette Voldby.

    In: Journal of Clinical Microbiology, Vol. 51, No. 9, 2013, p. 3162-3162.

    Publication: Research - peer-reviewLetter – Annual report year: 2013

  305. Published

    In Vivo SILAC-Based Proteomics Reveals Phosphoproteome Changes during Mouse Skin Carcinogenesis. / Zanivan, Sara; Meves, Alexander; Behrendt, Kristina; Schoof, Erwin; Neilson, Lisa J.; Cox, Jürgen; Tang, Hao R.; Kalna, Gabriela; van Ree, Janine H.; van Deursen, Jan M.; Trempus, Carol S.; Machesky, Laura M.; Linding, Rune; Wickström, Sara A.; Fässler, Reinhard; Mann, Matthias.

    In: Cell Reports, Vol. 3, No. 2, 2013, p. 552-566.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  306. Published

    Kinetic Model for Signal Binding to the Quorum Sensing Regulator LasR. / Claussen, Anetta; Jakobsen, Tim Holm; Bjarnsholt, Thomas; Givskov, Michael; Welch, Martin; Ferkinghoff-Borg, Jesper; Sams, Thomas.

    In: International Journal of Molecular Sciences (Online), Vol. 14, No. 7, 2013, p. 13360-13376.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  307. Published

    LC-MS at core of university-industry link. / Linding, Rune.

    In: Trends in Analytical Chemistry, Vol. 51, 2013, p. VIII-IX.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  308. Published

    Lipid hydrolysis products affect the composition of microbiota isolated from infant fecal samples after in vitro fermentation. / Bennike, Rikke Mette Guldhammer; Licht, Tine Rask; Hellgren, Lars.

    2013. Abstract from Cell Symposia, Lisbon, Portugal.

    Publication: Research - peer-reviewConference abstract for conference – Annual report year: 2013

  309. Published

    Lipid hydrolysis products affect the composition of microbiota isolated from infant fecal samples after in vitro fermentation. / Bennike, Rikke Mette Guldhammer; Licht, Tine Rask; Hellgren, Lars.

    2013. Abstract from 27th Nordic Lipid Symposium, Helsinki, Finland.

    Publication: Research - peer-reviewConference abstract for conference – Annual report year: 2013

  310. Published

    Low-Bandwidth and Non-Compute Intensive Remote Identification of Microbes from Raw Sequencing Reads. / Gautier, Laurent; Lund, Ole.

    In: P L o S One, Vol. 8, No. 12, e83784, 2013.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  311. Published

    Mapping Condition-Dependent Regulation of Lipid Metabolism in Saccharomyces cerevisiae.. / Jewett, Michael Christopher; Workman, Christopher; Nookaew, Intawat; Pizarro, Francisco A; Agosin, Eduardo; Hellgren, Lars; Nielsen, Jens.

    In: G3 Defence, Vol. 3, No. 11, 2013, p. 1979-1995.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  312. Published

    Meta-analysis of genome-wide association studies identifies ten loci influencing allergic sensitization.. / Bønnelykke, Klaus; Matheson, Melanie C; Pers, Tune Hannes; Granell, Raquel; Strachan, David P; Alves, Alexessander Couto; Linneberg, Allan René; Curtin, John A; Warrington, Nicole M; Standl, Marie; Kerkhof, Marjan; Jonsdottir, Ingileif; Bukvic, Blazenka K; Kaakinen, Marika; Sleimann, Patrick; Thorleifsson, Gudmar; Thorsteinsdottir, Unnur; Schramm, Katharina; Baltic, Svetlana; Kreiner-Møller, Eskil; Simpson, Angela; Pourcain, Beate St; Coin, Lachlan; Hui, Jennie; Walters, Eugene H; Tiesler, Carla M T; Duffy, David L; Jones, Graham; Ring, Susan M; McArdle, Wendy L; Price, Loren; Robertson, Colin F; Pekkanen, Juha; Tang, Clara S; Thiering, Elisabeth; Montgomery, Grant W; Hartikainen, Anna-Liisa; Dharmage, Shyamali C; Husemoen, Lise Lotte Nystrup; Herder, Christian; Kemp, John P; Elliot, Paul; James, Alan; Waldenberger, Melanie; Abramson, Michael J; Fairfax, Benjamin P; Knight, Julian C; Gupta, Ramneek; Thompson, Philip J; Holt, Patrick; Sly, Peter; Hirschhorn, Joel N; Blekic, Mario; Weidinger, Stephan; Hakonarsson, Hakon; Stefansson, Kari; Heinrich, Joachim; Postma, Dirkje S; Custovic, Adnan; Pennell, Craig E; Jarvelin, Marjo-Riitta; Koppelman, Gerard H; Timpson, Nicholas; Ferreira, Manuel A; Bisgaard, Hans; Henderson, A John.

    In: Nature Genetics, 2013.

    Publication: Research - peer-reviewLetter – Annual report year: 2013

  313. Published

    Metagenomic Analysis of the Human Gut Microbiome. / dos Santos, Marcelo Bertalan Quintanilha; Nielsen, Henrik Bjørn (Supervisor); Sicheritz-Pontén, Thomas (Main supervisor).

    Kgs. Lyngby : Technical University of Denmark, 2013. 117 p.

    Publication: ResearchPh.D. thesis – Annual report year: 2013

  314. Published

    Metagenomic species profiling using universal phylogenetic marker genes. / Sunagawa, Shinichi; Mende, Daniel R; Zeller, Georg; Izquierdo-Carrasco, Fernando; Berger, Simon A; Kultima, Jens Roat; Coelho, Luis Pedro; Arumugam, Manimozhiyan; Tap, Julien; Nielsen, Henrik Bjørn; Rasmussen, Simon; Brunak, Søren; Pedersen, Oluf; Guarner, Francisco; de Vos, Willem M; Wang, Jun; Li, Junhua; Doré, Joël; Ehrlich, S Dusko; Stamatakis, Alexandros; Bork, Peer.

    In: Nature Methods, Vol. 10, No. 12, 2013, p. 1196–1199.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  315. Published

    MetaRanker 2.0: a web server for prioritization of genetic variation data. / Pers, Tune Hannes; Dworzynski, Piotr; Thomas, Cecilia Engel; Hansen, Kasper Lage; Brunak, Søren.

    In: Nucleic Acids Research, Vol. 41, No. Web Server issue, 2013, p. W104-W108.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  316. Published

    Methods for predicting anti-cancer response. / Szallasi, Zoltan Imre (Inventor); Eklund, Aron Charles (Inventor); Birkbak, Nicolai Juul (Inventor); Richardson, Andrea L. (Inventor); Silver, Daniel P. (Inventor); Wang, Zhigang (Inventor).

    IPC No.: C12Q1/68. Patent No.: WO2013130347. Sep 06, 2013.

    Publication: ResearchPatent – Annual report year: 2012

  317. Published

    MHCcluster, a method for functional clustering of MHC molecules. / Thomsen, Martin Christen Frølund; Lundegaard, Claus; Buus, Søren; Lund, Ole; Nielsen, Morten.

    In: Immunogenetics, Vol. 65, No. 9, 2013, p. 655-665.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  318. Published

    MicroRNA profiling in ocular adnexal lymphoma: a role for MYC and NFKB1 mediated dysregulation of microRNA expression in aggressive disease. / Hother, Christoffer; Rasmussen, Peter Kristian; Joshi, Tejal; Reker, Ditte; Ralfkiær, Ulrik; Workman, Christopher; Heegaard, Steffen; Ralfkiær, Elisabeth; Grønbæk, Kirsten.

    In: Investigative Ophthalmology & Visual Science, Vol. 54, No. 8, 2013, p. 5169-5175.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  319. Published

    MISTIC: mutual information server to infer coevolution. / Simonetti, Franco L.; Teppa, Elin; Chernomoretz, Ariel; Nielsen, Morten; Marino Buslje, Cristina.

    In: Nucleic Acids Research, Vol. 41, No. W1, 2013, p. 20W8-W14.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  320. Published

    Molecular signaling networks in regulation of immunity and disease. / Laursen, Janne Marie; Jensen, Stina Rikke; Sørensen, Morten; Pedersen, Susanne Brix.

    2013. Abstract from Copenhagen Bioscience Conference – Genomics in metabolism, Snekkersten, Denmark.

    Publication: Research - peer-reviewConference abstract for conference – Annual report year: 2013

  321. Published

    Monitoring Expansion of T Cell Specifities Against Foot-and-Mpouth-Disease Virus (FMDV) in Swine With MHC Class I Tetramers Following a Prime/Boost Vaccination. / Pedersen, Lasse Eggers; Patch, J.; Glabman, R.; Kenney, M.; Nielsen, Morten; Buus, S.; Jungersen, Gregers; Golde, W. T.

    10th International Veterinary Immunology Symposium - IVIS 2013. 2013. p. 72 CS05.5.

    Publication: Research - peer-reviewConference abstract in proceedings – Annual report year: 2013

  322. Published

    Mutations in FGF17, IL17RD, DUSP6, SPRY4, and FLRT3 Are Identified in Individuals with Congenital Hypogonadotropic Hypogonadism. / Miraoui, Hichem; Dwyer, Andrew A.; Sykiotis, Gerasimos P.; Plummer, Lacey; Chung, Wilson; Feng, Bihua; Beenken, Andrew; Clarke, Jeff; Pers, Tune Hannes; Dworzynski, Piotr; Keefe, Kimberley; Niedziela, Marek; Raivio, Taneli; Crowley, William F., Jr.; Seminara, Stephanie B.; Quinton, Richard; Hughes, Virginia A.; Kumanov, Philip; Young, Jacques; Yialamas, Maria A.; Hall, Janet E.; Van Vliet, Guy; Chanoine, Jean-Pierre; Rubenstein, John; Mohammadi, Moosa; Tsai, Pei-San; Sidis, Yisrael; Hansen, Kasper Lage; Pitteloud, Nelly.

    In: American Journal of Human Genetics, Vol. 92, No. 5, 2013, p. 725-743.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  323. Published

    NetFCM: A Tool for Automated Flow Cytometric Data Analysis. / Frederiksen, Juliet Wairimu; Lund, Ole; Buggert, M.; Karlsson, A.

    In: Scandinavian Journal of Immunology, Vol. 77, No. 44, 2013, p. 325.

    Publication: Research - peer-reviewConference abstract in journal – Annual report year: 2013

  324. Published

    NETMHCSTAB - predicting stability of peptide-MHC-I complexes; impacts for cytotoxic T lymphocyte epitope discovery. / Jørgensen, Kasper W.; Rasmussen, Michael; Buus, Søren; Nielsen, Morten.

    In: Immunology, Vol. 141, No. 1, 2013, p. 18-26.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  325. Published

    Obesity-induced hepatic and placental inflammation are absent in obese gestating mice compared to control fed dams. / Ingvorsen, Camilla; Thysen, Anna Hammerich; Fernandez-Twinn, Denise; Ozanne, Susan E.; Pedersen, Susanne Brix; Hellgren, Lars.

    2013. Abstract from 15th European Congress of Endocrinology 2013, Copenhagen, Denmark.

    Publication: Research - peer-reviewConference abstract for conference – Annual report year: 2013

  326. Published

    Offspring from rat mothers fed a high-fat/high-sucrose diet during gestation and lactation accumulate free fatty acids in the liver when exposed to high fat diet as adults.. / Hellgren, Lars; Ingvorsen, Camilla.

    2013. Abstract from 11th Euro Fed Lipid Congress, Antalya, Turkey.

    Publication: Research - peer-reviewConference abstract for conference – Annual report year: 2013

  327. Published

    Parallel evolution of tumor subclones mimics diversity between tumors. / Martinez, Pierre; Birkbak, Nicolai Juul; Gerlinger, Marco; McGranahan, Nicholas; Burrell, Rebecca; Rowan, Andrew; Joshi, Tejal; Fisher, Rosalie; Larkin, James; Szallasi, Zoltan Imre; Swanton, Charles.

    In: Journal of Pathology, Vol. 230, No. 4, 2013, p. 356-364.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  328. Published

    PathogenFinder - Distinguishing Friend from Foe Using Bacterial Whole Genome Sequence Data.. / Cosentino, Salvatore; Larsen, Mette Voldby; Aarestrup, Frank Møller; Lund, Ole.

    In: PloS one., Vol. 8, No. 10, 2013, p. e77302.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  329. Published

    Pathogenic bacteria colonizing the airways in asymptomatic neonates stimulates topical inflammatory mediator release.. / Følsgaard, Nilofar Vahman; Schjørring, Susanne; Chawes, Bo Lund Krogsgaard; Rasmussen, Morten; Krogfelt, Karen Angeliki; Pedersen, Susanne Brix; Bisgaard, Hans Flinker.

    In: American Journal of Respiratory and Critical Care Medicine, Vol. 187, No. 6, 2013, p. 589-595.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  330. Published

    Patterns of prokaryotic lateral gene transfers affecting parasitic microbial eukaryotes. / Alsmark, Cecilia; Foster, Peter G; Sicheritz-Pontén, Thomas; Nakjang, Sirintra; Martin Embley, T; Hirt, Robert P.

    In: Genome Biology, Vol. 14, No. 2, 2013, p. R19.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  331. Published

    Peptide-binding motifs associated with MHC molecules common in Chinese rhesus macaques are analogous to those of human HLA supertypes and include HLA-B27-like alleles. / Mothé, Bianca R.; Southwood, Scott; Sidney, John; English, A. Michelle; Wriston, Amanda; Hoof, Ilka; Shabanowitz, Jeffrey; Hunt, Donald F.; Sette, Alessandro.

    In: Immunogenetics, Vol. 65, No. 5, 2013, p. 371-386.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  332. Published

    Perinatal programming of metabolic dysfunction and obesity-induced inflammation. / Ingvorsen, Camilla; Hellgren, Lars; Pedersen, Susanne Brix.

    Kgs. Lyngby : Technical University of Denmark, 2013. 184 p.

    Publication: ResearchPh.D. thesis – Annual report year: 2013

  333. Published

    Personalized Network-Based Treatments in Oncology. / Robin, Xavier; Creixell, Pau; Radetskaya, Oxana; Santina, Cristina Costa; Longden, James; Linding, Rune.

    In: Clinical Pharmacology and Therapeutics, Vol. 94, No. 6, 2013, p. 646-650.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  334. Published

    PHAISTOS : A framework for Markov chain Monte Carlo simulation and inference of protein structure. / Boomsma, Wouter; Frellsen, Jes; Harder, Tim; Bottaro, Sandro; Johansson, Kristoffer E.; Tian, Pengfei; Stovgaard, Kasper; Andreetta, Christian; Olsson, Simon; Valentin, Jan B.; Antonov, Lubomir D.; Christensen, Anders; Borg, Mikael; Jensen, Jan H.; Lindorff‐Larsen, Kresten; Ferkinghoff-Borg, Jesper; Hamelryck, Thomas.

    In: Journal of Computational Chemistry, Vol. 34, No. 19, 2013, p. 1697-1705.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  335. Published

    Pharmacological profiling of drugs by linking chemoinformatics and bioinformatics data. / Taboureau, Olivier .

    In: Abstracts of Papers of the American Chemical Society, Vol. 245, 71-CINF, 2013.

    Publication: Research - peer-reviewConference abstract in journal – Annual report year: 2013

  336. Published

    Phytanic acid stimulates glucose uptake in a model of skeletal muscles, the primary porcine myotubes. / Che, Brita Ngum; Oksbjerg, Niels; Hellgren, Lars; Nielsen, Jacob H; Young, Jette F.

    In: Lipids in Health and Disease, Vol. 12, No. 1, 2013, p. 14.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  337. Published

    Polychlorinated dibenzo-p-dioxins, furans, and biphenyls (PCDDs/PCDFs and PCBs) in breast milk and early childhood growth and IGF1.. / Wohlfahrt-Veje, Christine; Audouze, Karine Marie Laure; Brunak, Søren; Antignac, Jean Philippe; le Bizec, Bruno; Juul, Anders ; Skakkebæk, Niels E.; Main, Katharina Maria.

    In: Reproduction, Vol. 147, No. 4, 2013, p. 391-399.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  338. Published

    Polymorphism in the fatty acid desaturase genes and diet are important determinants of infant n-3 fatty acid status.. / Harsløf, L.B.S.; Larsen, L.H.; Ritz, C.; Hellgren, Lars; Michaelsen, K. F.; Vogel, U.; Lauritzen, L.

    2013. Abstract from IUNS 20th International Congress of Nutrition, Granada, Spain.

    Publication: Research - peer-reviewConference abstract for conference – Annual report year: 2013

  339. Published

    Polymorphisms in the fatty acid desaturase genes and diet are important determinants of infant docosahexaenoic acid status. / Lauritzen, L.; Harsløf, L.; Larsen, L.H.; Ritz, C.; Hellgren, Lars; Michaelsen, K. F.; Vogel, U.

    In: Annals of Nutrition and Metabolism, Vol. 63, No. Suppl. 1, PO133, 2013, p. 320-321.

    Publication: Research - peer-reviewConference abstract in journal – Annual report year: 2013

  340. Published

    Postnatal amniotic fluid intake reduces gut inflammatory responses and necrotizing enterocolitis in preterm neonates. / Siggers, Jayda; Østergaard, Mette V.; Siggers, Richard H.; Skovgaard, Kerstin; Mølbak, Lars; Thymann, Thomas; Schmidt, Mette; Møller, Hanne Kristine; Purup, Stig; Fink, Lisbeth Nielsen; Frøkiær, Hanne; Boye, Mette; Sangild, Per T.; Bering, Stine B.

    In: American Journal of Physiology: Gastrointestinal and Liver Physiology, Vol. 304, No. 10, 2013, p. G864-G875.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  341. Published

    Pre- and early-postnatal nutrition modify gene and protein expressions of muscle energy metabolism markers and phospholipid fatty acid composition in a muscle type specific manner in sheep.. / Hou, Lei; Kongsted, Alice; Ghoreishi, S. M.; Takhtsabzy, T. K.; Friedrichsen, Martin; Hellgren, Lars; Kadarmideen, Haja; Vaag, Allan; Nielsen, Mette O.

    In: PLoS ONE, Vol. 8, No. 6, 2013, p. e65452 .

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  342. Published

    Precision mapping of the human O-GalNAc glycoproteome through SimpleCell technology. / Steentoft, Catharina; Vakhrushev, Sergey; Joshi, Hiren Jitendra; Kong, Yun; Vester-Christensen, Malene B; Schjoldager, Katrine T-BG; Lavrsen, Kirstine; Dabelsteen, Sally Anne Malene; Pedersen, Nis Borbye; Marcos-Silva, Lara; Gupta, Ramneek; Paul Bennett, Eric; Mandel, Ulla; Brunak, Søren; Wandall, Hans H.; Levery, Steven Bruce; Clausen, Henrik.

    In: EMBO Journal, Vol. 32, No. 10, 2013, p. 1478-1488.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  343. Published
  344. Published

    Predictions of Phase Separation in Three-Component Lipid Membranes by the MARTINI Force Field. / Davis, Ryan S.; Sunil Kumar, P. B.; Sperotto, Maria Maddalena; Laradji, Mohamed.

    In: Journal of Physical Chemistry Part B: Condensed Matter, Materials, Surfaces, Interfaces & Biophysical, Vol. 117, No. 15, 2013, p. 4072-4080.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  345. Published

    Prognostic and Predictive Markers in Metastatic Renal Cell Carcinoma. / Khattak, Muhammad A.; Bakr, Farrah; Krzystanek, Marcin; Szallasi, Zoltan Imre; Gerlinger, Marco; Santos, Claudio; Swanton, Charles; Pickering, Lisa M.; Gore, Martin E.; Larkin, James M.G.

    In: Journal of Clinical Oncology, Vol. 31, No. 7, 2013, p. 20971-972.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  346. Published

    PROTEINCHALLENGE: Crowd sourcing in proteomics analysis and software development. / Martin, Sarah F.; Falkenberg, Heiner; Dyrlund, Thomas Franck; Khoudoli, Guennadi A.; Mageean, Craig J.; Linding, Rune.

    In: Journal of Proteomics, Vol. 88, 2013, p. 41-46.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  347. Published

    Real-Time WGS-based Typing of VTEC Isolates for Surveillance and Outbreak Detection. / Joensen, Katrine Grimstrup; Hasman, Henrik; Scheutz, F.; Nielsen, E. M.; Lund, Ole; Aarestrup, Frank Møller.

    10th International Meeting on Microbial Epidemiological Markers (IMMEM-10) - Abstract Book. Paris, France, 2013. p. 209.

    Publication: Research - peer-reviewConference abstract in proceedings – Annual report year: 2013

  348. Published

    Recalibrating Equus evolution using the genome sequence of an early Middle Pleistocene horse.. / Orlando, Ludovic Antoine Alexandre; Ginolhac, Aurélien; Zhang, Guojie; Froese, Duane; Albrechtsen, Anders; Stiller, Mathias; Schubert, Mikkel; Cappellini, Enrico; Petersen, Bent; Moltke, Ida; Johnson, Philip L F; Fumagalli, Matteo; Vilstrup, Julia T; Raghavan, Maanasa; Korneliussen, Thorfinn Sand; Malaspinas, Anna Sapfo; Vogt, Josef Korbinian; Szklarczyk, Damian; Kelstrup, Christian; Vinther, Jakob; Dolocan, Andrei; Stenderup, Jesper; Velazquez, Amhed M. V.; Cahill, James; Rasmussen, Morten; Wang, Xiaoli; Min, Jiumeng; Zazula, Grant D; Seguin-Orlando, Andaine; Mortensen, Cecilie; Magnussen, Kim; Thompson, John F; Weinstock, Jacobo; Gregersen, Magnus Kristian; Røed, Knut H; Eisenmann, Véra; Rubin, Carl J; Miller, Donald C; Antczak, Douglas F; Bertelsen, Mads; Brunak, Søren; Al-Rasheid, Khaled A S; Ryder, Oliver; Andersson, Leif; Mundy, John; Krogh, Anders; Gilbert, Marcus Thomas Pius; Kjær, Kurt H.; Sicheritz-Pontén, Thomas; Jensen, Lars Juhl; Olsen, Jesper; Hofreiter, Michael; Nielsen, Rasmus; Shapiro, Beth; Wang, Jun; Willerslev, Eske.

    In: Nature, Vol. 499, 2013, p. 74-78.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  349. Published

    Reconstructing the highly virulent Classical Swine Fever Virus strain Koslov. / Fahnøe, Ulrik; Pedersen, Anders Gorm; Nielsen, Jens; Höper, Dirk; Beer, Martin; Rasmussen, Thomas Bruun.

    2013. Abstract from SMBE 2013 – Annual Meeting of the Society for Molecular Biology and Evolution, Chicago, IL, United States.

    Publication: Research - peer-reviewConference abstract for conference – Annual report year: 2013

  350. Published

    Regulatory Coordination between Two Major Intracellular Homeostatic Systems : Heat shock response and autophagy. / Dokladny, Karol; Zuhl, Micah Nathaniel; Mandell, Michael; Bhattacharya, Dhruva; Schneider, Suzanne; Deretic, Vojo; Moseley, Pope.

    In: Journal of Biological Chemistry, Vol. 288, No. 21, 2013, p. 14959-14972.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  351. Published

    Reply to 'Mining electronic health records: an additional perspective'. / Jensen, Peter B.; Jensen, Lars J.; Brunak, Søren.

    In: Nature Reviews. Genetics, Vol. 14, No. 1, 2013, p. -.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  352. Published

    Richness of human gut microbiome correlates with metabolic markers.. / Le Chatelier, Emmanuelle; Nielsen, Trine; Qin, Junjie; Prifti, Edi; Hildebrand, Falk; Falony, Gwen; Almeida, Mathieu; Arumugam, Manimozhiyan; Batto, Jean-Michel; Kennedy, Sean; Leonard, Pierre; Li, Junhua; Burgdorf, Kristoffer; Grarup, Niels; Jørgensen, Torben; Brandslund, Ivan; Nielsen, Henrik Bjørn; Juncker, Agnieszka; dos Santos, Marcelo Bertalan Quintanilha; Levenez, Florence; Pons, Nicolas; Rasmussen, Simon; Sunagawa, Shinichi; Tap, Julien; Tims, Sebastian; Zoetendal, Erwin G; Brunak, Søren; Clément, Karine; Doré, Joël; Kleerebezem, Michiel; Kristiansen, Karsten; Renault, Pierre; Sicheritz-Pontén, Thomas; de Vos, Willem M.; Zucker, Jean-Daniel; Raes, Jeroen; Hansen, Torben; Bork, Peer; Wang, Jun; Ehrlich, S Dusko; Pedersen, Oluf.

    In: Nature, Vol. 500, No. 7464, 2013, p. 541-546.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  353. Published

    Scientific competency questions as the basis for semantically enriched open pharmacological space development. / Azzaoui, Kamal; Jacoby, Edgar; Senger, Stefan; Rodríguez, Emiliano Cuadrado; Loza, Mabel; Zdrazil, Barbara; Pinto, Marta; Williams, Antony J.; de la Torre, Victor; Mestres, Jordi; Pastor, Manuel; Taboureau, Olivier ; Rarey, Matthias; Chichester, Christine; Pettifer, Steve; Blomberg, Niklas; Harland, Lee; Williams-Jones, Bryn; Ecker, Gerhard F.

    In: Drug Discovery Today, Vol. 18, No. 17-18, 2013, p. 843-852.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  354. Published

    Sigma factors in a thousand E. coli genomes. / Cook, Helen Victoria; Ussery, David.

    In: Environmental Microbiology, Vol. 15, No. 12, 2013, p. 3121-3129.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  355. Published

    SigniSite: Identification of residue-level genotype-phenotype correlations in protein multiple sequence alignments. / Jessen, Leon Ivar; Hoof, Ilka; Lund, Ole; Nielsen, Morten.

    In: Nucleic Acids Research, Vol. 41, No. W1, 2013, p. 20W286-W291.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  356. Published

    Simultaneous alignment and clustering of peptide data using a Gibbs sampling approach. / Andreatta, Massimo; Lund, Ole; Nielsen, Morten.

    In: Bioinformatics, Vol. 29, No. 1, 2013, p. 8-14.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  357. Published

    Structural analysis of B-cell epitopes in antibody:protein complexes. / Kringelum, Jens Vindahl; Nielsen, Morten; Padkjær, Søren Berg; Lund, Ole.

    In: Molecular Immunology, Vol. 53, No. 1-2, 2013, p. 24-34.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  358. Published

    Targeted Metabolic Engineering Guided by Computational Analysis of Single-Nucleotide Polymorphisms (SNPs). / Udatha, D B R K Gupta; Rasmussen, Simon; Sicheritz-Pontén, Thomas; Panagiotou, Gianni.

    Systems Metabolic Engineering : Methods and Protocols. Springer, 2013. p. 409-428 (Methods in Molecular Biology, Vol. 985).

    Publication: Research - peer-reviewBook chapter – Annual report year: 2013

  359. Published

    Targeting of conserved gag-epitopes in early HIV infection is associated with lower plasma viral load and slower CD4+ T cell depletion.. / Perez, Carina L. ; Milush, Jeffrey M. ; Buggert, Marcus; Eriksson, Emily M. ; Larsen, Mette Voldby; Liegler, Teri; Hartogensis, Wendy; Bacchetti, Peter; Lund, Ole; Hecht, Frederick M. ; Nixon, Douglas F. ; Karlsson, Annika C. .

    In: AIDS Research and Human Retroviruses, Vol. 29, No. 3, 2013, p. 602-612.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  360. Published

    Temporal variability in urinary phthalate metabolite excretion based on spot, morning, and 24-h urine samples: Considerations for epidemiological studies. / Frederiksen, Hanne; Kranich, Selma K.; Jørgensen, Niels; Taboureau, Olivier ; Petersen, Jørgen H.; Andersson, Anna-Maria.

    In: Environmental Science and Technology, Vol. 47, No. 2, 2013, p. 958-967.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  361. Published
  362. Published

    The CIN4 chromosomal instability qPCR classifier defines tumor aneuploidy and stratifies outcome in grade 2 breast cancer.. / Szász, Attila Marcell; Li, Qiyuan; Eklund, Aron Charles; Sztupinszki, Zsófia; Rowan, Andrew; Tőkés, Anna-Mária; Székely, Borbála; Kiss, András; Szendrői, Miklós; Győrffy, Balázs; Szallasi, Zoltan Imre; Swanton, Charles; Kulka, Janina.

    In: PloS one., Vol. 8, No. 2, 2013, p. e56707.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  363. Published

    The effect of network biology on drug toxicology.. / Gautier, Laurent; Taboureau, Olivier ; Audouze, Karine Marie Laure.

    In: Expert Opinion on Drug Metabolism & Toxicology, Vol. 9, No. 11, 2013, p. 1409-1418.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  364. Published

    The piRNAs forge an immune system for the genome. / Muller, Sébastian; Pandey, R.R.; Pillai, R.S.

    In: Medecine Sciences, Vol. 29, No. 5, 2013, p. 487-494.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  365. Published

    The SH2 Domain Interaction Landscape. / Tinti, Michele; Kiemer, Lars; Costa, Stefano; Miller, Martin Lee; Sacco, Francesca; Olsen, Jesper; Carducci, Martina; Paoluzi, Serena; Langone, Francesca; Workman, Christopher; Blom, Nikolaj; Machida, Kazuya; Thompson, Christopher M.; Schutkowski, Mike; Brunak, Søren; Mann, Matthias; Mayer, Bruce J.; Castagnoli, Luisa; Cesareni, Gianni.

    In: Cell Reports, Vol. 3, No. 4, 2013, p. 1293-1305.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  366. Published

    Time dependent physiological characterization of yeast oxidative stress response and growth modulation of protein kinase/phosphatase mutants. / Altintas, Ali; Workman, Christopher.

    In: Yeast, Vol. 30, No. S1, 2013, p. 156-156.

    Publication: Research - peer-reviewConference abstract in journal – Annual report year: 2013

  367. Published

    TIMP-1 increases expression and phosphorylation of proteins associated with drug resistance in breast cancer cells. / Hekmat, Omid; Munk, Stephanie; Fogh, Louise; Yadav, Rachita; Francavilla, Chiara; Horn, Heiko; Wurtz, Sidse Ornbjerg; Schrohl, Anne-Sofie; Damsgaard, Britt; Romer, Maria Unni; Belling, Kirstine C.; Jensen, Niels Frank; Gromova, Irina; Bekker-Jensen, Dorte B; Moreira, Jose Manuel Matos; Jensen, Lars Juhl; Gupta, Ramneek; Lademann, Ulrik; Brunner, Nils; Olsen, Jesper; Stenvang, Jan.

    In: Journal of Proteome Research, Vol. 12, No. 9, 2013, p. 4136–4151.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  368. Published

    TIMP1 overexpression mediates resistance of MCF-7 human breast cancer cells to fulvestrant and down-regulates progesterone receptor expression. / Bjerre, Christina; Vinther, Lena; Belling, Kirstine C.; Würtz, Sidse Ø.; Yadav, Rachita; Lademan, Ulrik; Rigina, Olga; Nguyen Do, Khoa; Ditzel, Henrik Jørn; Lykkesfeldt, Anne Elisabeth; Wang, Jun; Nielsen, Henrik Bjørn; Brünner, Nils; Gupta, Ramneek; Schrohl, Anne-Sofie; Stenvang, Jan.

    In: Tumor Biology, Vol. 34, 2013, p. 3839-3851.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  369. Published

    Transcriptome profiling of mice testes following low dose irradiation. / Belling, Kirstine C.; Tanaka, Masami; Dalgaard, Marlene Danner; Nielsen, John Erik; Nielsen, Henrik Bjørn; Brunak, Søren; Almstrup, Kristian; Leffers, Henrik.

    In: Reproductive Biology and Endocrinology, Vol. 11, No. 1, 2013.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  370. Published

    Transcriptome Responses to Combinations of Stresses in Arabidopsis. / Rasmussen, Simon; Barah, Pankaj; Suarez-Rodriguez, Maria Cristina; Bressendorff, Simon; Friis, Pia; Costantino, Paolo; Bones, Atle M.; Nielsen, Henrik Bjørn; Mundy, John.

    In: Plant Physiology, Vol. 161, No. 4, 2013, p. 1783-1794.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  371. Published

    Tumor Mutation Burden Forecasts Outcome in Ovarian Cancer with BRCA1 or BRCA2 Mutations. / Birkbak, Nicolai Juul; Kochupurakkal, Bose; Gonzalez-Izarzugaza, Jose Maria; Eklund, Aron Charles; Li, Yang; Liu, Joyce; Szallasi, Zoltan Imre; Matulonis, Ursula A. ; Richardson, Andrea L. ; Iglehart, J. Dirk ; Wang, Zhigang C.

    In: P L o S One, Vol. 8, No. 11, e80023, 2013.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  372. Published

    VAR2CSA Epitope Identification - Finding All the Needles in All the Haystacks. / Jessen, L. E.; Ditlev, S. B.; Schafer-Nielsen, C.; Buus, S.; Salanti, A.; Lund, Ole.

    In: Scandinavian Journal of Immunology, Vol. 77, No. 4, 2013, p. 318-319.

    Publication: Research - peer-reviewConference abstract in journal – Annual report year: 2013

  373. Published

    Veillonella, Firmicutes: Microbes disguised as Gram negatives. / Vesth, Tammi Camilla; Ozen, Asli; Andersen, Sandra Christine; Kaas, Rolf Sommer; Lukjancenko, Oksana; Bohlin, Jon; Nookaew, Intawat; Wassenaar, Trudy M.; Ussery, David.

    In: Standards in Genomic Sciences, Vol. 9, No. 2, 2013, p. 431-448.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  374. Published

    Whey protein reduces early life weight gain in mice fed a high-fat diet.. / Tranberg, Britt; Hellgren, Lars; Lykkesfeldt, Jens; Sejrsen, Kristen; Jeamet, Aymeric; Rune, Ida; Ellekilde, Merete; Nielsen, Dennis Sandris; Hansen, Axel Kornerup.

    In: PloS one., Vol. 8, No. 8, e71439, 2013.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  375. Published

    Whole-Exome Sequencing of 2,000 Danish Individuals and the Role of Rare Coding Variants in Type 2 Diabetes. / Lohmueller, Kirk E. ; Sparsø, Thomas; Li, Qibin; Andersson, Ehm; Korneliussen, Thorfinn; Albrechtsen, Anders; Banasik, Karina; Grarup, Niels; Hallgrimsdottir, Ingileif; Kiil, Kristoffer; O. Kilpeläinen, Tuomas; T. Krarup, Nikolaj; Pers, Tune Hannes; Sanchez, Gaston; Hu, Youna; DeGiorgio, Michael; Jørgensen, Torben; Sandbæk, Annelli; Lauritzen, Torsten; Brunak, Søren; Kristiansen, Karsten; Li, Yingrui; Hansen, Torben; Wang, Jun; Nielsen, Rasmus; Pedersen, Oluf.

    In: American Journal of Human Genetics, Vol. 93, No. 6, 2013, p. 1072–1086.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  376. Published

    wKinMut: An integrated tool for the analysis and interpretation of mutations in human protein kinases. / Gonzalez-Izarzugaza, Jose Maria; Vazquez, Miguel; del Pozo, Angela; Valencia, Alfonso.

    In: B M C Bioinformatics, Vol. 14, 345, 2013.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  377. 2012
  378. Published

    Absorption difference between diacylglycerol oil and butter blend containing diacylglycerol oil. / Kristensen, Janni Brogaard; Jørgensen, Henry; Mu, Huiling.

    In: European Journal of Lipid Science and Technology, Vol. 114, No. 2, 2012, p. 146-152.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  379. Published

    A comparative analysis of the intestinal metagenomes present in guinea pigs (Cavia porcellus) and humans (Homo sapiens). / Hildebrand, Falk; Ebersbach, Tine; Nielsen, Henrik Bjørn; Li, Xiaoping; Sonne, Si Brask; dos Santos, Marcelo Bertalan Quintanilha; Dimitrov, Peter; Madsen, Lise; Qin, Junjie; Wang, Jun; Raes, Jeroen; Kristiansen, Karsten; Licht, Tine Rask.

    In: B M C Genomics, Vol. 13, No. 514, 2012.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  380. Published

    A genome-wide association study of men with symptoms of testicular dysgenesis syndrome and its network biology interpretation.. / Dalgaard, Marlene D; Weinhold, Nils; Edsgard, Stefan Daniel; Silver, Jeremy D; Pers, Tune Hannes; Nielsen, John E.; Jørgensen, Niels; Juul, Anders; Gerds, Thomas A.; Giwercman, Aleksander; Giwercman, Yvonne L.; Cohn-Cedermark, Gabriella; Virtanen, Helena E.; Toppari, Jorma; Daugaard, Gedske; Jensen, Thomas Skøt; Brunak, Søren; Rajpert-De Meyts, Ewa; Skakkebæk, Niels E; Leffers, Henrik; Gupta, Ramneek.

    In: Journal of Medical Genetics, Vol. 49, No. 1, 2012, p. 58-65.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  381. Published

    Analysis of cytotoxic T cell epitopes in relation to cancer. / Stranzl, Thomas; Brunak, Søren (Main supervisor); Larsen, Mette Voldby (Supervisor).

    Kgs. Lyngby : Technical University of Denmark, 2012. 97 p.

    Publication: ResearchPh.D. thesis – Annual report year: 2012

  382. Published
  383. Published

    Androgen receptor signalling in peritubular myoid cells is essential for normal differentiation and function of adult Leydig cells. / Welsh, M.; Moffat, L.; Belling, Kirstine Christensen; de Franca, L. R.; Segatelli, T. M.; Saunders, P. T. K.; Sharpe, R. M.; Smith, L. B.

    In: International Journal of Andrology, Vol. 35, No. 1, 2012, p. 25-40.

    Publication: Research - peer-reviewJournal article – Annual report year: 2011

  384. Published

    Applied systems biology - vanillin production in Saccharomyces cerevisiae. / Strucko, Tomas; Eriksen, Carsten; Nielsen, J.; Mortensen, Uffe Hasbro.

    In: The F E B S Journal (Online), Vol. 279, No. Supplement s1, 2012, p. 525-525.

    Publication: Research - peer-reviewConference abstract in journal – Annual report year: 2012

  385. Published

    Association between chemical pattern in breast milk and congenital cryptorchidism: modelling of complex human exposures. / Krysiak-Baltyn, Konrad; Toppari, J.; Skakkebaek, N. E.; Jensen, Thomas Skøt; Virtanen, H. E.; Schramm, K.‐W.; Shen, Hao; Vartiainen, T.; Kiviranta, H.; Taboureau, Olivier ; Audouze, Karine Marie Laure; Brunak, S.; Main, K. M.

    In: International Journal of Andrology, Vol. 35, No. 3, 2012, p. 294-302.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  386. Published

    A Steered Molecular Dynamics Study of Binding and Translocation Processes in the GABA Transporter. / Skovstrup, Soren; David, Laurent; Taboureau, Olivier; Jorgensen, Flemming Steen.

    In: P L o S One, Vol. 7, No. 6, 2012, p. -.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  387. Published

    Bacterial adaptive response to changing herbicide discharge rates in the streambed sediments impacted by a landfill. / Pazarbasi, Meric Batioglu; Bælum, Jacob; Pilloni, Giovanni; Larentis, Micheal; Jacobsen, Carsten S.; Lueders, Tillmann; Hansen, Lars H.; Aamand, Jens .

    2012. Poster session presented at 14th International Symposium on Microbial Ecology, Copenhagen, Denmark.

    Publication: Research - peer-reviewPoster – Annual report year: 2012

  388. Published

    Bayesian prediction of bacterial growth temperature range based on genome sequences. / Jensen, Dan Børge; Vesth, Tammi Camilla; Hallin, Peter Fischer; Pedersen, Anders Gorm; Ussery, David.

    Eleventh International Conference on Bioinformatics (InCoB2012): Computational Biology. Vol. 13 2012. (B M C Genomics).

    Publication: Research - peer-reviewArticle in proceedings – Annual report year: 2012

  389. Published

    BDDCS Class Prediction for New Molecular Entities. / Broccatelli, Fabio; Cruciani, Gabriele; Benet, Leslie Z.; Oprea, Tudor.

    In: Molecular Pharmaceutics, Vol. 9, No. 3, 2012, p. 570-580.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  390. Published

    Bioinformatics Training Network (BTN): a community resource for bioinformatics trainers. / Schneider, Maria V.; Walter, Peter; Blatter, Marie-Claude; Watson, James; Brazas, Michelle D.; Rother, Kristian; Budd, Aidan; Via, Allegra; van Gelder, Celia W. G.; Jacob, Joachim; Fernandes, Pedro; Nyrönen, Tommi H.; De Las Rivas, Javier; Holberg Blicher, Thomas; Jimenez, Rafael C.; Loveland, Jane; McDowall, Jennifer; Jones, Phil; Vaughan, Brendan W.; Lopez, Rodrigo; Attwood, Teresa K.; Brooksbank, Catherine.

    In: Briefings in Bioinformatics, Vol. 13, No. 3, 2012, p. 383-389.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  391. Published

    Campylobacter fetus subspecies: Comparative genomics and prediction of potential virulence targets. / Ali, Amjad; Soares, Siomar C.; Santos, Anderson R.; Guimarães, Luis C.; Barbosa, Eudes; Almeida, Sintia S.; Abreu, Vinícius A.C.; Carneiro, Adriana R.; Ramos, Rommel T.J.; Bakhtiar, Syeda Marriam; Hassan, Syed S.; Ussery, David W.; On, Stephen; Silva, Artur; Schneider, Maria P.; Lage, Andrey P.; Miyoshi, Anderson; Azevedo, Vasco.

    In: Gene, Vol. 508, No. 2, 2012, p. 145-156.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  392. Published

    Cells, shared memory and breaking the PTM code.. / Creixell, Pau; Linding, Rune.

    In: Molecular Systems Biology, Vol. 8, 2012.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  393. Published

    Ceramide profile in hypohidrotic ectodermal dysplasia. / Jungersted, J. M.; Høgh, Julie Kaae; Hellgren, Lars; Agnert, T.; Jemec, G. B. E.

    In: Clinical and Experimental Dermatology, Vol. 37, No. 2, 2012, p. 153-155.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  394. Published

    CERT depletion predicts chemotherapy benefit and mediates cytotoxic and polyploid‐specific cancer cell death through autophagy induction. / Lee, Alvin J. X.; Roylance, Rebecca; Sander, Jil; Gorman, Patricia; Endesfelder, David; Kschischo, Maik; Jones, Neil P.; East, Philip; Nicke, Barbara; Spassieva, Stefka; Obeid, Lina M.; Birkbak, Nicolai Juul; Szallasi, Zoltan; McKnight, Nicole C.; Rowan, Andrew J.; Speirs, Valerie; Hanby, Andrew M.; Downward, Julian; Tooze, Sharon A.; Swanton, Charles.

    In: Journal of Pathology, Vol. 226, No. 3, 2012, p. 482-494.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  395. Published

    Characterization of HIV-Specific CD4+T Cell Responses against Peptides Selected with Broad Population and Pathogen Coverage. / Buggert, Marcus; Norstrom, Melissa M.; Czarnecki, Chris; Tupin, Emmanuel; Luo, Ma; Gyllensten, Katarina; Sonnerborg, Anders; Lundegaard, Claus; Lund, Ole; Nielsen, Morten; Karlsson, Annika C.

    In: P L o S One, Vol. 7, No. 7, 2012.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  396. Published

    Characterizing the binding motifs of 11 common human HLA‐DP and HLA‐DQ molecules using NNAlign. / Andreatta, Massimo; Nielsen, Morten.

    In: Immunology, Vol. 136, No. 3, 2012, p. 306-311.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  397. Published

    Cometin is a novel neurotrophic factor that promotes neurite outgrowth and neuroblast migration in vitro and supports survival of spiral ganglion neurons in vivo. / Jørgensen, Jesper Roland; Fransson, Anette; Fjord-Larsen, Lone; Thompson, Lachlan H.; Houchins, Jeffrey P.; Andrade, Nuno; Torp, Malene; Kalkkinen, Nisse; Andersson, Elisabet; Lindvall, Olle; Ulfendahl, Mats; Brunak, Søren; Johansen, Teit E.; Wahlberg, Lars U.

    In: Experimental Neurology, Vol. 233, No. 1, 2012, p. 172-181.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  398. Published

    Common and Distant Structural Characteristics of Feruloyl Esterase Families from Aspergillus oryzae. / Udatha, D. B. R. K. Gupta; Mapelli, Valeria; Panagiotou, Gianni; Olsson, Lisbeth.

    In: P L o S One, Vol. 7, No. 6, 2012, p. e39473.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  399. Published

    Comparative genomics of bifidobacterium, lactobacillus and related probiotic genera.. / Lukjancenko, Oksana; Ussery, David; Wassenaar, Trudy M.

    In: Microbial Ecology, Vol. 63, No. 3, 2012, p. 651-673.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  400. Published

    Computational Methods for Conformational Sampling of Biomolecules. / Bottaro, Sandro; Ferkinghoff-Borg, Jesper (Main supervisor); Lindorff-Larsen, Kresten (Supervisor).

    Kgs. Lyngby : Technical University of Denmark, 2012. 147 p.

    Publication: ResearchPh.D. thesis – Annual report year: 2012

  401. Published

    Concepts in Mechanism Based Modeling. / Lund, Ole; Laugesen, Jakob Lund; Mosekilde, Erik.

    Biosimulation in Biomedical Research, Health Care and Drug Development. Springer, 2012. p. 19-41.

    Publication: Research - peer-reviewBook chapter – Annual report year: 2012

  402. Published

    Condition-dependent transcriptome reveals high-level regulatory architecture in Bacillus subtilis.. / Nicolas, Pierre; Mäder, Ulrike; Dervyn, Etienne; Rochat, Tatiana; Leduc, Aurélie; Pigeonneau, Nathalie; Bidnenko, Elena; Marchadier, Elodie; Hoebeke, Mark; Aymerich, Stéphane; Becher, Dörte; Bisicchia, Paola; Botella, Eric; Delumeau, Olivier; Doherty, Geoff; Denham, Emma L; Fogg, Mark J; Fromion, Vincent; Goelzer, Anne; Hansen, Annette; Härtig, Elisabeth; Harwood, Colin R; Homuth, Georg; Jarmer, Hanne; Jules, Matthieu; Klipp, Edda; Le Chat, Ludovic; Lecointe, François; Lewis, Peter; Liebermeister, Wolfram; March, Anika; Mars, Ruben A T; Nannapaneni, Priyanka; Noone, David; Pohl, Susanne; Rinn, Bernd; Rügheimer, Frank; Sappa, Praveen K; Samson, Franck; Schaffer, Marc; Schwikowski, Benno; Steil, Leif; Stülke, Jörg; Wiegert, Thomas; Devine, Kevin M; Wilkinson, Anthony J; van Dijl, Jan Maarten; Hecker, Michael; Völker, Uwe; Bessières, Philippe; Noirot, Philippe.

    In: Science, Vol. 335, No. 6072, 2012, p. 1103-1106.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  403. Published

    Congenital diaphragmatic hernia candidate genes derived from embryonic transcriptomes.. / Russell, Meaghan K; Longoni, Mauro; Wells, Julie; Maalouf, Faouzi I; Tracy, Adam A; Loscertales, Maria; Ackerman, Kate G; Pober, Barbara R; Hansen, Kasper Lage; Bult, Carol J; Donahoe, Patricia K.

    In: National Academy of Sciences. Proceedings, Vol. 109, No. 8, 2012, p. 2978-2983.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  404. Published

    Congenital diaphragmatic hernia interval on chromosome 8p23.1 characterized by genetics and protein interaction networks. / Longoni, Mauro; Hansen, Kasper Lage; Russell, Meaghan K.; Loscertales, Maria; Abdul‐Rahman, Omar A.; Baynam, Gareth; Bleyl, Steven B.; Brady, Paul D.; Breckpot, Jeroen; Chen, Chih P.; Devriendt, Koenraad; Gillessen‐Kaesbach, Gabriele; Grix, Arthur W.; Rope, Alan F.; Shimokawa, Osamu; Strauss, Bernarda; Wieczorek, Dagmar; Zackai, Elaine H.; Coletti, Caroline M.; Maalouf, Faouzi I.; Noonan, Kristin M.; Park, Ji H.; Tracy, Adam A.; Lee, Charles; Donahoe, Patricia K.; Pober, Barbara R.

    In: American Journal of Medical Genetics. Part A, Vol. 158A, No. 12, 2012, p. 3148-3158.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  405. Published

    Defining the Pseudomonas Genus: Where Do We Draw the Line with Azotobacter?. / Özen, Asli Ismihan; Ussery, David.

    In: Microbial Ecology in Health & Disease, Vol. 63, No. 2, 2012, p. 239-248.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  406. Published

    Describing the Peptide Binding Specificity of HLA-C. / Rasmussen, Michael; Harndahl, Mikkel Nors; Nielsen, Morten; Buus, Soren; Stryhn, Anette.

    2012. Abstract from 99th Annual Meeting of the American-Association-of-Immunologists, Boston MA, .

    Publication: Research - peer-reviewConference abstract for conference – Annual report year: 2012

  407. Published

    Designing bovine T cell vaccines via reverse immunology. / Nene, Vishvanath; Svitek, Nicholas; Toye, Philip; Golde, William T.; Barlow, John; Harndahl, Mikkel Nors; Buus, Soren; Nielsen, Morten.

    In: Ticks and Tick-borne Diseases, Vol. 3, No. 3, 2012, p. 188-192.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  408. Published

    Differential Protein Pathways in 1,25-Dihydroxyvitamin D-3 and Dexamethasone Modulated Tolerogenic Human Dendritic Cells. / Ferreira, Gabriela Bomfim; Kleijwegt, Fleur S.; Waelkens, Etienne; Hansen, Kasper Lage; Nikolic, Tatjana; Hansen, Daniel Aaen; Workman, Christopher; Roep, Bart O.; Overbergh, Lut; Mathieu, Chantal.

    In: Journal of Proteome Research, Vol. 11, No. 2, 2012, p. 941-971.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  409. Published

    Disentangling evolutionary signals: conservation, specificity determining positions and coevolution. Implication for catalytic residue prediction. / Teppa, Elin; Wilkins, Angela D.; Nielsen, Morten; Marino Buslje, Cristina.

    In: B M C Bioinformatics, Vol. 13, 2012, p. -.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  410. Published
  411. Published

    Drug Repurposing: Far Beyond New Targets for Old Drugs. / Oprea, Tudor; Mestres, J.

    In: A A P S Journal, Vol. 14, No. 4, 2012, p. 759-763.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  412. Published

    Effects of Butter and Phytanic acid intake on metabolic parameters and T-cell polarization. / Drachmann, Tue; Hellgren, Lars (Main supervisor); Pedersen, Susanne Brix (Supervisor).

    Kgs. Lyngby : Technical University of Denmark, 2012. 173 p.

    Publication: ResearchPh.D. thesis – Annual report year: 2012

  413. Published

    Enantioselective determination of methylphenidate and ritalinic acid in whole blood from forensic cases using automated solid-phase extraction and liquid chromatography-tandem mass spectrometry.. / Thomsen, Ragnar; B. Rasmussen, Henrik; Linnet, Kristian; Brunak, Søren; Taboureau, Olivier .

    In: Journal of Analytical Toxicology, Vol. 36, 2012, p. 560-568.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  414. Published

    Established and Emerging Trends in Computational Drug Discovery in the Structural Genomics Era. / Taboureau, Olivier; Baell, Jonathan B.; Fernández-Recio, Juan; Villoutreix, Bruno O.

    In: Chemistry & Biology, Vol. 19, No. 1, 2012, p. 29-41.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  415. Published
  416. Published
  417. Published

    Evolution and diversification of Pseudomonas aeruginosa in the paranasal sinuses of cystic fibrosis children have implications for chronic lung infection. / Hansen, Susse Kirkelund; Rau, Martin Holm; Johansen, Helle Krogh; Ciofu, Oana; Jelsbak, Lars; Yang, Lei; Folkesson, Anders; Jarmer, Hanne Østergaard; Aanæs, Kasper; von Buchwald, Christian; Høiby, Niels; Molin, Søren.

    In: I S M E Journal, Vol. 6, No. 1, 2012, p. 31.

    Publication: Research - peer-reviewJournal article – Annual report year: 2011

  418. Published

    Fish intake, erythrocyte n-3 fatty acid status and metabolic health in Danish adolescent girls and boys. / Lauritzen, Lotte; Harsløf, Laurine B. S.; Hellgren, Lars; Pedersen, Maiken Højgaard; Mølgaard, Christian; Michaelsen, Kim F.

    In: British Journal of Nutrition, Vol. 107, 2012, p. 697-704.

    Publication: Research - peer-reviewJournal article – Annual report year: 2011

  419. Published

    Fitting the complexity of GPCRs modulation into simple hypotheses of ligand design. / Custodi, Chiara; Nuti, Roberto; Oprea, Tudor; Macchiarulo, Antonio.

    In: Journal of Molecular Graphics and Modelling, Vol. 38, 2012, p. 70-81.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  420. Published

    Flip-Flop of Steroids in Phospholipid Bilayers: Effects of the Chemical Structure on Transbilayer Diffusion. / Parisio, Giulia; Sperotto, Maria Maddalena; Ferrarini, Alberta.

    In: American Chemical Society. Journal, Vol. 134, No. 29, 2012, p. 12198-12208.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  421. Published

    From Genome Sequence to Taxonomy - A Skeptic’s View. / Özen, Asli Ismihan; Vesth, Tammi Camilla; Ussery, David.

    The Prokaryotes. ed. / Rosenberg E.2012 : Springer, 2012.

    Publication: Research - peer-reviewBook chapter – Annual report year: 2012

  422. Published

    From genomic variation to personalized medicine. / Wesolowska, Agata; Gupta, Ramneek (Supervisor); Brunak, Søren (Supervisor); Schmiegelow, Kjeld .

    Department of Systems Biology, DTU, 2012. 151 p.

    Publication: ResearchPh.D. thesis – Annual report year: 2013

  423. Published

    From Viral genome to specific peptide epitopes - Methods for identifying porcine T cell epitopes based on in silico predictions, in vitro identification and ex vivo verification. / Pedersen, Lasse Eggers; Rasmussen, Michael ; Harndahl, Mikkel ; Nielsen, Morten; Buus, Søren; Jungersen, Gregers.

    2012. Abstract from 4th European Veterinary Immunology Workshop (EVIW), Edinburgh, United Kingdom.

    Publication: Research - peer-reviewConference abstract for conference – Annual report year: 2012

  424. Published

    Functional and phenotypic profiling of innate immunity during Salmonella infection. / Sørensen, Rikke Brandt; Pedersen, Susanne Brix.

    Kgs. Lyngby : Technical University of Denmark, 2012. 128 p.

    Publication: ResearchPh.D. thesis – Annual report year: 2012

  425. Published

    Gene expression dynamics in the oxidative stress response of fission yeast. / Papadakis, Emmanouil; Workman, Christopher (Main supervisor).

    Kgs. Lyngby : Technical University of Denmark (DTU), 2012. 221 p.

    Publication: ResearchPh.D. thesis – Annual report year: 2013

  426. Published

    Gene prioritization for livestock diseases by data integration. / Jiang, Li; Sørensen, Peter; Thomsen, Bo Stjerne; Edwards, Stefan McKinnon; Skarman, Axel; Røntved, Christine Maria; Lund, Mogens Sandø; Workman, Christopher T.

    In: Physiological Genomics, Vol. 44, No. 5, 2012, p. 305-317.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  427. Published

    Genetic and environmental risk factors in congenital heart disease functionally converge in protein networks driving heart development. / Hansen, Kasper Lage; Greenway, Steven C.; Rosenfeld, Jill A.; Wakimoto, Hiroko; Gorham, Joshua M.; Segrè, Ayellet V.; Roberts, Amy E.; Smoot, Leslie B.; Pu, William T.; C. Pereira, Alexandre; Mesquita, Sonia M.; Tommerup, Niels; Brunak, Søren; Ballif, Blake C.; Shaffer, Lisa G.; Donahoe, Patricia K.; Daly, Mark J.; Seidman, Jonathan G.; Seidman, Christine E.; Larsen, Lars.

    In: National Academy of Sciences. Proceedings, Vol. 109, No. 35, 2012, p. 14035-14040.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  428. Published

    Genome‐wide analysis of cytogenetic aberrations in ETV6/RUNX1‐positive childhood acute lymphoblastic leukaemia. / Borst, Louise; Wesolowska, Agata; Joshi, Tejal; Borup, Rehannah; Nielsen, Finn; Andersen, Mette K.; Jonsson, Olafur G.; Wehner, Peder Skov; Wesenberg, Finn; Frost, Britt‐Marie; Gupta, Ramneek; Schmiegelow, Kjeld.

    In: British Journal of Haematology, Vol. 157, No. 4, 2012, p. 476-482.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  429. Published
  430. Published

    Global network reorganization during dynamic adaptations of Bacillus subtilis metabolism.. / Buescher, Joerg Martin; Liebermeister, Wolfram; Jules, Matthieu; Uhr, Markus; Muntel, Jan; Botella, Eric; Hessling, Bernd; Kleijn, Roelco Jacobus; Le Chat, Ludovic; Lecointe, François; Mäder, Ulrike; Nicolas, Pierre; Piersma, Sjouke; Rügheimer, Frank; Becher, Dörte; Bessieres, Philippe; Bidnenko, Elena; Denham, Emma L; Dervyn, Etienne; Devine, Kevin M; Doherty, Geoff; Drulhe, Samuel; Felicori, Liza; Fogg, Mark J; Goelzer, Anne; Hansen, Annette; Harwood, Colin R; Hecker, Michael; Hubner, Sebastian; Hultschig, Claus; Jarmer, Hanne; Klipp, Edda; Leduc, Aurélie; Lewis, Peter; Molina, Frank; Noirot, Philippe; Peres, Sabine; Pigeonneau, Nathalie; Pohl, Susanne; Rasmussen, Simon; Rinn, Bernd; Schaffer, Marc; Schnidder, Julian; Schwikowski, Benno; Van Dijl, Jan Maarten; Veiga, Patrick; Walsh, Sean; Wilkinson, Anthony J; Stelling, Jörg; Aymerich, Stéphane; Sauer, Uwe.

    In: Science, Vol. 335, No. 6072, 2012, p. 1099-1103.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  431. Published

    Group a Pfemp1 functional domains bind icam1 and induce cross-reactive and adhesion inhibitory antibodies during malaria infections. / Bengtsson, A.; Jørgensen, L.; Rask, Thomas Salhøj; Olsen, R. W.; Andersen, M. A.; Turner, L.; Theander, T. G. ; Higins, M. K.; Craig, A.; Brown, A.; Christoffersen, S.; Jensen, A. T. R.

    Joint Spring Symposium 2012 - Double burden of disease – how parasites interact with each other, their host and the society: Danish Society for Parasitology and Danish Society for Tropical Medicine & International Health. Danish Society for Parasitology, 2012. p. 9.

    Publication: Research - peer-reviewConference abstract in proceedings – Annual report year: 2012

  432. Published

    How well do the substrates KISS the enzyme? Molecular docking program selection for feruloyl esterases. / Udatha, D. B. R. K. Gupta; Sugaya, Nobuyoshi; Olsson, Lisbeth; Panagiotou, Gianni.

    In: Scientific Reports, Vol. 2, 2012.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  433. Published

    Hyperactivity of the Ero1α Oxidase Elicits Endoplasmic Reticulum Stress but No Broad Antioxidant Response. / Hansen, Henning Gram; Schmidt, Jonas Damgard; Soltoft, Cecilie Lutzen; Ramming, Thomas; Geertz-Hansen, Henrik Marcus; Christensen, Brian; Sorensen, Esben Skipper; Juncker, Agnieszka; Appenzeller-Herzog, Christian; Ellgaard, Lars.

    In: Journal of Biological Chemistry, Vol. 287, No. 47, 2012, p. 39513-39523.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  434. Published
  435. Published

    Identification of a Novel UTY‐Encoded Minor Histocompatibility Antigen. / Mortensen, B. K.; Rasmussen, A. H.; Larsen, Malene Erup; Larsen, Mette Voldby; Lund, Ole; Braendstrup, P.; Harndahl, Mikkel Nors; Rasmussen, M.; Buus, S.; Stryhn, A.; Vindeløv, Lars.

    In: Scandinavian Journal of Immunology, Vol. 76, No. 2, 2012, p. 141-150.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  436. Published
  437. Published

    Immune epitope database analysis resource. / Kim, Yohan; Ponomarenko, Julia; Zhu, Zhanyang; Tamang, Dorjee; Wang, Peng; Greenbaum, Jason; Lundegaard, Claus; Sette, Alessandro; Lund, Ole; Bourne, Philip E.; Nielsen, Morten; Peters, Bjoern.

    In: Nucleic Acids Research, Vol. 40, No. W1, 2012, p. W525-W530.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  438. Published

    Immune Recognition of Latency-insitigating Pathogens by Human Dendritic Cells. / Søndergaard, Jonas Nørskov; Pedersen, Susanne Brix (Main supervisor).

    Kgs. Lyngby : Technical University of Denmark, 2012. 106 p.

    Publication: ResearchPh.D. thesis – Annual report year: 2013

  439. Published

    Immunogenicity of Mycobacterium avium subsp. paratuberculosis specific peptides for inclusion in a subunit vaccine against paratuberculosis. / Mikkelsen, Heidi; Tollefsen, S.; Olsen, I.; Aagaard, C.; Lundegaard, Claus; Jungersen, Gregers.

    2012. Abstract from 4th European Veterinary Immunology Workshop (EVIW), Edinburgh, United Kingdom.

    Publication: Research - peer-reviewConference abstract for conference – Annual report year: 2012

  440. Published

    Improving the prediction of the brain disposition for orally administered drugs using BDDCS. / Broccatelli, Fabio; Larregieu, Caroline A.; Cruciani, Gabriele; Oprea, Tudor; Benet, Leslie Z.

    In: Advanced Drug Delivery Reviews, Vol. 64, No. 1, 2012, p. 95-109.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  441. Published

    Integrative data analysis of male reproductive disorders. / Edsgard, Stefan Daniel; Brunak, Søren (Main supervisor); Jensen, Thomas Skøt (Supervisor).

    Kgs. Lyngby : Technical University of Denmark, 2012. 186 p.

    Publication: ResearchPh.D. thesis – Annual report year: 2012

  442. Published

    Intratumor Heterogeneity and Branched Evolution Revealed by Multiregion Sequencing. / Gerlinger, Marco; Rowan, Andrew J.; Horswell, Stuart; Larkin, James; Endesfelder, David; Gronroos, Eva; Martinez, Pierre; Matthews, Nicholas; Stewart, Aengus; Tarpey, Patrick; Varela, Ignacio; Phillimore, Benjamin; Begum, Sharmin; McDonald, Neil Q.; Butler, Adam; Jones, David; Raine, Keiran; Latimer, Calli; Santos, Claudio R.; Nohadani, Mahrokh; Eklund, Aron Charles; Spencer-Dene, Bradley; Clark, Graham; Pickering, Lisa; Stamp, Gordon; Gore, Martin; Szallasi, Zoltan Imre; Downward, Julian; Futreal, P. Andrew; Swanton, Charles.

    In: New England Journal of Medicine, Vol. 366, No. 10, 2012, p. 883-892.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  443. Published

    Isolation of IL-12p70-competent human monocyte-derived dendritic cells. / Søndergaard, Jonas Nørskov; Pedersen, Susanne Brix.

    In: Journal of Immunological Methods, Vol. 386, No. 1-2, 2012, p. 112-116.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  444. Published

    Is the pan-genome also a pan-selectome?. / Ussery, David; Rodriguez-Valera, Francisco.

    In: F1000Research, Vol. 1, No. 16, 2012.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  445. Published

    Knowledge engineering for health: A new discipline required to bridge the “ICT gap” between research and healthcare. / Beck, Tim; Gollapudi, Sirisha; Brunak, Søren; Graf, Norbert; Lemke, Heinz U.; Dash, Debasis; Buchan, Iain; Díaz, Carlos; Sanz, Ferran; Brookes, Anthony J.

    In: Human Mutation, Vol. 33, No. 5, 2012, p. 797-802.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  446. Published

    LeuO is a global regulator of gene expression in Salmonella enterica serovar Typhimurium. / Dillon, Shane C.; Espinosa, Elena; Hokamp, Karsten; Ussery, David; Casadesús, Josep; Dorman, Charles J.

    In: Molecular Microbiology, Vol. 85, No. 6, 2012, p. 1072-1089.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  447. Published

    LocARNA-P: Accurate boundary prediction and improved detection of structural RNAs. / Will, Sebastian; Joshi, Tejal; Hofacker, Ivo L.; Stadler, Peter F.; Backofen, Rolf.

    In: R N A, Vol. 18, No. 5, 2012, p. 900-914.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  448. Published
  449. Published

    Maternal high-fat/high-sucrose diet during lactation results in increased adipose tissue mass, and altered hepatic fatty acid metabolism at weaning. / Ingvorsen, Camilla; Hellgren, Lars.

    2012. Abstract from Symposium for Biotech Research at DTU - Systems Biology, Lyngby, Denmark.

    Publication: Research - peer-reviewConference abstract for conference – Annual report year: 2013

  450. Published

    Maternal high-fat/high-sucrose diet during lactation results in increased adipose tissue mass, and altered hepatic fatty acid metabolism at weaning. / Ingvorsen, Camilla; Hellgren, Lars.

    2012. Abstract from Benzon Symposium No. 58 Adipose Tissue in Health and Disease, Copenhagen, Denmark.

    Publication: Research - peer-reviewConference abstract for conference – Annual report year: 2013

  451. Published

    Mechanisms of G Protein-Coupled Estrogen Receptor-Mediated Spinal Nociception. / Deliu, Elena; Brailoiu, G. Cristina; Arterburn, Jeffrey B.; Oprea, Tudor I.; Benamar, Khalid; Dun, Nae J.; Brailoiu, Eugen.

    In: Journal of Pain, Vol. 13, No. 8, 2012, p. 742-754.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  452. Published

    MicroRNA expression profiling of carcinoma in situ cells of the testis. / Novotny, Guy Wayne; Belling, Kirstine Christensen; Bramsen, Jesper Bertram; Nielsen, John E; Bork-Jensen, Jette; Almstrup, Kristian; Sonne, Si Brask; Kjems, Jørgen; Rajpert-De Meyts, Ewa; Leffers, Henrik.

    In: Endocrine - Related Cancer, Vol. 19, No. 3, 2012, p. 365-379.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  453. Published

    Mining electronic health records: towards better research applications and clinical care.. / Jensen, Peter B; Jensen, Lars Juhl; Brunak, Søren.

    In: Nature Reviews. Genetics, Vol. 13, No. 6, 2012, p. 395-405.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  454. Published

    Modeling of Phenoxy Acid Herbicide Mineralization and Growth of Microbial Degraders in 15 Soils Monitored by Quantitative Real-Time PCR of the Functional tfdA Gene. / Bælum, Jacob; Prestat, Emmanuel; David, Maude M.; Strobel, Bjarne W.; Jacobsen, Carsten Suhr.

    In: Applied and Environmental Microbiology, Vol. 78, No. 15, 2012, p. 5305-5312.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  455. Published

    Motion gør dig mere sund end et vægttab. / Hoffmann, Thomas Jøhnk; Nordby, Pernille.

    In: Videnskab.dk, 2012.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  456. Published
  457. Published

    Muscle ceramide content is similar after 3 weeks’ consumption of fat or carbohydrate diet in a crossover design in patients with type 2 diabetes. / Helge, J. W.; Tobin, L.; Drachmann, Tue; Hellgren, Lars; Dela, F.; Galbo, H.

    In: European Journal of Applied Physiology, Vol. 112, No. 3, 2012, p. 911-918.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  458. Published

    Mutational properties of amino acid residues: implications for evolvability of phosphorylatable residues. / Creixell, Pau; Schoof, Erwin M.; Tan, Chris Soon Heng; Linding, Rune.

    In: Royal Society of London. Philosophical Transactions B. Biological Sciences, Vol. 367, No. 1602, 2012, p. 2584-2593.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  459. Published

    Mycobacterium leprae virulence-associated peptides are indicators of exposure to M. leprae in Brazil, Ethiopia and Nepal. / Bobosha, Kidist; Tang, Sheila Tuyet; van der Ploeg-van Schip, Jolien J.; Bekele, Yonas; Martins, Marcia V. S. B.; Lund, Ole; Franken, Kees L. M. C.; Khadge, Saraswoti; de Andrade Pontes, Maria Araci; Goncalves, Heitor de Sa; Hussien, Jemal; Thapa, Pratibha; Kunwar, Chhatra B.; Hagge, Deanna A.; Aseffa, Abraham; Vidal Pessolani, Maria Cristina; Pereira, Geraldo M. B.; Ottenhoff, Tom H. M.; Geluk, Annemieke.

    In: Instituto Oswaldo Cruz, Rio de Janeiro. Memorias, Vol. 107, 2012, p. 112-123.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  460. Published

    Nature of bacterial colonization influences transcription of mucin genes in mice during the first week of life. / Bergström, Anders; Kristensen, Matilde Bylov; Bahl, Martin Iain; Metzdorff, Stine B.; Fink, Lisbeth Nielsen; Frøkiær, Hanne; Licht, Tine Rask.

    In: B M C Research Notes, Vol. 5, No. 1, 2012, p. 402.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  461. Published

    Navigating cancer network attractors for tumor-specific therapy.. / Creixell, Pau; Schoof, Erwin; Erler, Janine Terra; Linding, Rune.

    In: Nature Biotechnology, Vol. 30, No. 9, 2012, p. 842-848.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  462. Published

    Neonatal Cytokine Profile in the Airway Mucosal Lining Fluid Is Skewed by Maternal Atopy. / Folsgaard, Nilofar V.; Chawes, Bo L.; Rasmussen, Morten A.; Bischoff, Anne L.; Carson, Charlotte G.; Stokholm, Jakob; Pedersen, Louise; Hansel, Trevor T.; Bonnelykke, Klaus; Pedersen, Susanne Brix; Bisgaard, Hans.

    In: American Journal of Respiratory and Critical Care Medicine, Vol. 185, No. 3, 2012, p. 275-280.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  463. Published

    NetMHCcons: a consensus method for the major histocompatibility complex class I predictions. / Karosiene, Edita; Lundegaard, Claus; Lund, Ole; Nielsen, Morten.

    In: Immunogenetics, Vol. 64, No. 3, 2012, p. 177-186.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  464. Published

    Network Medicine Strikes a Blow against Breast Cancer. / Erler, Janine Terra; Linding, Rune.

    In: Cell, Vol. 149, No. 4, 2012, p. 731-733.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  465. Published

    Non-O1 Vibrio cholerae unlinked to cholera in Haiti. / Mekalanos, John J.; Robins, William; Ussery, David; Davis, Brigid M.; Schadt, Eric; Waldor, Matthew K.

    In: National Academy of Sciences. Proceedings, Vol. 109, No. 47, 2012, p. E3206.

    Publication: Research - peer-reviewLetter – Annual report year: 2012

  466. Published

    Of possible cheminformatics futures. / Oprea, Tudor I.; Taboureau, Olivier; Bologa, Cristian G.

    In: Journal of Computer - Aided Molecular Design, Vol. 26, No. 1, 2012, p. 107-112.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  467. Published

    Partial migration in fishes: definitions, methodologies and taxonomic distribution.. / Chapman, B B; Skov, C; Hulthén, K; Brodersen, Jacob; Nilsson, P A; Hansson, L-A; Brönmark, C.

    In: Journal of Fish Biology, Vol. 81, No. 2, 2012, p. 479-499.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  468. Published

    Peptide‐MHC class I stability is a better predictor than peptide affinity of CTL immunogenicity. / Harndahl, Mikkel Nors; Rasmussen, Michael; Roder, Gustav; Dalgaard Pedersen, Ida; Sørensen, Mikael; Nielsen, Morten; Buus, Søren.

    In: European Journal of Immunology, Vol. 42, No. 6, 2012, p. 1405-1416.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  469. Published

    Peptide-MHC class I stability is a stronger predictor of CTL immunogenicity than peptide affinity. / Harndahl, Mikkel Nors; Rasmussen, Michael; Nielsen, Morten; Buus, Soren.

    Molecular Immunology. Vol. 51 Elsevier, 2012. p. 11.

    Publication: Research - peer-reviewConference abstract in proceedings – Annual report year: 2012

  470. Published

    Plasmodium falciparum erythrocyte membrane protein 1 domain cassettes 8 and 13 are associated with severe malaria in children. / Lavstsen, Thomas; Turner, Louise; Saguti, Fredy; Magistrado, Pamela Almeida; Rask, Thomas Salhøj; Jespersen, Jakob S.; Wang, Christian W.; Berger, Sanne Schou; Baraka, Vito; Marquard, Andrea M.; Seguin-Orlando, Andaine; Willerslev, Eske; Gilbert, Marcus Thomas Pius; Lusingu, John Peter Andrea; Theander, Thor Grundtvig.

    In: National Academy of Sciences. Proceedings, Vol. 109, No. 26, 2012, p. E1791-E1800.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  471. Published

    Polyclonality of Concurrent Natural Populations of Alteromonas macleodii. / Gonzaga, Aitor; Martin-Cuadrado, Ana-Belen; López-Pérez, Mario; Megumi Mizuno, Carolina; García-Heredia, Inmaculada; Kimes, Nikole E.; Lopez-García, Purificación; Moreira, David; Ussery, David; Zaballos, Mila; Ghai, Rohit; Rodriguez-Valera, Francisco.

    In: Genome Biology and Evolution, Vol. 4, No. 12, 2012, p. 201360-1374.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  472. Published
  473. Published

    Predictions versus high-throughput experiments in T-cell epitope discovery: competition or synergy?. / Lundegaard, Claus; Lund, Ole; Nielsen, Morten.

    In: Expert Review of Vaccines, Vol. 11, No. 1, 2012, p. 43.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  474. Published

    Profiles of Genomic Instability in High-Grade Serous Ovarian Cancer Predict Treatment Outcome. / Wang, Zhigang C.; Birkbak, Nicolai Juul; Culhane, Aedín C.; Drapkin, Ronny; Fatima, Aquila; Tian, Ruiyang; Schwede, Matthew; Alsop, Kathryn; Daniels, Kathryn E.; Piao, Huiying; Liu, Joyce; Etemadmoghadam, Dariush; Miron, Alexander; Salvesen, Helga B.; Mitchell, Gillian; DeFazio, Anna; Quackenbush, John; Berkowitz, Ross S.; Iglehart, J. Dirk; Bowtell, David D.L.; Matulonis, Ursula A.

    In: Clinical Cancer Research, Vol. 18, No. 20, 2012, p. 5806-5815.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  475. Published
  476. Published

    Recommendations for Mass Spectrometry Data Quality Metrics for Open Access Data (Corollary to the Amsterdam Principles). / Kinsinger, Christopher R.; Apffel, James; Baker, Mark; Bian, Xiaopeng; Borchers, Christoph H.; Bradshaw, Ralph; Brusniak, Mi-Youn; Chan, Daniel W.; Deutsch, Eric W.; Domon, Bruno; Gorman, Jeff; Grimm, Rudolf; Hancock, William; Hermjakob, Henning; Horn, David; Hunter, Christie; Kolar, Patrik; Kraus, Hans-Joachim; Langen, Hanno; Linding, Rune; Moritz, Robert L.; Omenn, Gilbert S.; Orlando, Ron; Pandey, Akhilesh; Ping, Peipei; Rahbar, Amir; Rivers, Robert; Seymour, Sean L.; Simpson, Richard J.; Slotta, Douglas; Smith, Richard D.; Stein, Stephen E.; Tabb, David L.; Tagle, Danilo; Yates, John R., III; Rodriguez, Henry.

    In: Proteomics, Vol. 12, No. 1, 2012, p. 11-20.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  477. Published

    Recommendations for Mass Spectrometry Data Quality Metrics for Open Access Data (Corollary to the Amsterdam Principles). / Kinsinger, Christopher R.; Apffel, James; Baker, Mark; Bian, Xiaopeng; Borchers, Christoph H.; Bradshaw, Ralph; Brusniak, Mi-Youn; Chan, Daniel W.; Deutsch, Eric W.; Domon, Bruno; Gorman, Jeff; Grimm, Rudolf; Hancock, William; Hermjakob, Henning; Horn, David; Hunter, Christie; Kolar, Patrik; Kraus, Hans-Joachim; Langen, Hanno; Linding, Rune; Moritz, Robert L.; Omenn, Gilbert S.; Orlando, Ron; Pandey, Akhilesh; Ping, Peipei; Rahbar, Amir; Rivers, Robert; Seymour, Sean L.; Simpson, Richard J.; Slotta, Douglas; Smith, Richard D.; Stein, Stephen E.; Tabb, David L.; Tagle, Danilo; Yates, John R., III; Rodriguez, Henry.

    In: Journal of Proteome Research, Vol. 11, No. 2, 2012, p. 1412-1419.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  478. Published

    Relative entropy differences in bacterial chromosomes, plasmids, phages and genomic islands. / Bohlin, Jon; van Passel, Mark W. J.; Snipen, Lars; Kristoffersen, Anja B.; Ussery, David; Hardy, Simon P.

    In: B M C Genomics, Vol. 13, No. 66, 2012.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  479. Published
  480. Published

    Scale-free behaviour of amino acid pair interactions in folded proteins. / Petersen, Steffen B. ; Neves-Petersen, Maria Teresa; Mortensen, Rasmus J. ; Henriksen, Svend B. ; Geertz-Hansen, Henrik Marcus.

    In: P L o S One, Vol. 7, No. 7, 2012, p. e41322-e41322.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  481. Published
  482. Published

    Sequencing Chromosomal Abnormalities Reveals Neurodevelopmental Loci that Confer Risk across Diagnostic Boundaries. / Talkowski, Michael E.; Rosenfeld, Jill A.; Blumenthal, Ian; Pillalamarri, Vamsee; Chiang, Colby; Heilbut, Adrian; Ernst, Carl; Hanscom, Carrie; Rossin, Elizabeth; Lindgren, Amelia M.; Pereira, Shahrin; Ruderfer, Douglas; Kirby, Andrew; Ripke, Stephan; Harris, David J.; Lee, Ji-Hyun; Ha, Kyungsoo; Kim, Hyung-Goo; Solomon, Benjamin D.; Gropman, Andrea L.; Lucente, Diane; Sims, Katherine; Ohsumi, Toshiro K.; Borowsky, Mark L.; Loranger, Stephanie; Quade, Bradley; Hansen, Kasper Lage; Miles, Judith; Wu, Bai-Lin; Shen, Yiping; Neale, Benjamin; Shaffer, Lisa G.; Daly, Mark J.; Morton, Cynthia C.; Gusella, James F.

    In: Cell, Vol. 149, No. 3, 2012, p. 525-537.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  483. Published

    Sharing programming resources between Bio* projects through remote procedure call and native call stack strategies.. / Prins, Pjotr; Goto, Naohisa; Yates, Andrew; Gautier, Laurent; Willis, Scooter; Fields, Christopher; Katayama, Toshiaki.

    In: Methods in Molecular Biology, Vol. 856, 2012, p. 513-527.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  484. Published
  485. Published

    System chemical biology studies of endocrine disruptors. / Taboureau, Olivier; Oprea, Tudor I.

    2012. Abstract from 242nd National Meeting of the American-Chemical-Society (ACS), Denver, CO, United States.

    Publication: Research - peer-reviewConference abstract for conference – Annual report year: 2012

  486. Published

    Telomeric Allelic Imbalance Indicates Defective DNA Repair and Sensitivity to DNA-Damaging Agents. / Birkbak, Nicolai J.; Wang, Zhigang C.; Kim, Ji-Young; Eklund, Aron C.; Li, Qiyuan; Tian, Ruiyang; Bowman-Colin, Christian; Li, Yang; Greene-Colozzi, April; Iglehart, J. Dirk; Tung, Nadine; Ryan, Paula D.; Garber, Judy E.; Silver, Daniel P.; Szallasi, Zoltan; Richardson, Andrea L.

    In: Cancer Drug Discovery and Development, Vol. 2, No. 4, 2012, p. 366-375.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  487. Published
  488. Published

    The Duffy-Binding-Like β domain (DBLβ) of the Plasmodium falciparum erythrocyte membrane protein 1 (PfEMP1) variant, PFD1235w, binds ICAM1. / Andersen, M. A.; Bengtsson, A.; Rask, Thomas Salhøj; Jørgensen, L.; Jensen, A. T. R.

    Joint Spring Symposium 2012 - Double burden of disease – how parasites interact with each other, their host and the society: Danish Society for Parasitology and Danish Society for Tropical Medicine & International Health. Danish Society for Parasitology, 2012. p. 10.

    Publication: Research - peer-reviewConference abstract in proceedings – Annual report year: 2012

  489. Published

    The impact of network biology in pharmacology and toxicology. / Panagiotou, Gianni; Taboureau, Olivier .

    In: S A R and Q S A R in Environmental Research, Vol. 23, No. 3-4, Sp. Iss. SI, 2012, p. 221-235.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  490. Published

    The role of miRNA regulation in cancer progression and drug resistance. / Joshi, Tejal; Workman, Christopher (Main supervisor).

    Technical University of Denmark (DTU), 2012. 106 p.

    Publication: ResearchPh.D. thesis – Annual report year: 2013

  491. Published

    The transcriptional landscape and small RNAs of Salmonella enterica serovar Typhimurium. / Kröger, Carsten; Dillon, Shane C.; Cameron, Andrew D. S.; Papenfort, Kai; Sivasankaran, Sathesh K.; Hokamp, Karsten; Chao, Yanjie; Sittka, Alexandra; Hébrard, Magali; Händler, Kristian; Colgan, Aoife; Leekitcharoenphon, Pimlapas; Langridge, Gemma C.; Lohan, Amanda J.; Loftus, Brendan; Lucchini, Sacha; Ussery, David; Dorman, Charles J.; Thomson, Nicholas R.; Vogel, Jörg; Hinton, Jay C. D.

    In: National Academy of Sciences. Proceedings, Vol. 109, No. 20, 2012, p. E1277-E1286.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  492. Published

    TLR2 Controls Intestinal Carcinogen Detoxication by CYP1A1.. / Do, Khoa; Fink, Lisbeth Nielsen; Jensen, Thomas Elbenhardt; Gautier, Laurent; Parlesak, Alexandr.

    In: P L o S One, Vol. 7, No. 3, 2012, p. e32309.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  493. Published

    Toxicogenomics Investigation Under the eTOX Project. / Taboureau, Olivier ; Hersey, Anne; Audouze, Karine Marie Laure; Gautier, Laurent; Jacobsen, Ulrik Plesner; Akhtar, Ruth; Atkinson, Francis; Overington, John P.; Brunak, Søren.

    In: Journal of Pharmacogenomics & Pharmacoproteomics, 2012.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  494. Published

    Transcriptome Dynamics of Pseudomonas putida KT2440 under Water Stress. / Gülez, Gamze; Dechesne, Arnaud; Workman, Christopher; Smets, Barth F.

    In: Applied and Environmental Microbiology, Vol. 78, No. 3, 2012, p. 676-683.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  495. Published

    Two novel methods for using genome sequences to infer taxonomy. / Ussery, David; Gordon, Stephen V.

    In: Microbiology, Vol. 158, No. Pt 6, 2012, p. 1414.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  496. Published

    Uncovering the Molecular Machinery of the Human Spindle-An Integration of Wet and Dry Systems Biology. / Rojas, Ana M.; Santamaria, Anna; Malik, Rainer; Jensen, Thomas Skot; Korner, Roman; Morilla, Ian; de Juan, David; Krallinger, Martin; Hansen, Daniel Aaen; Hoffmann, Robert Daniel; Lees, Jonathan; Reid, Adam; Yeats, Corin; Wehner, Anja; Elowe, Sabine; Clegg, Andrew B.; Brunak, Soren; Nigg, Erich A.; Orengo, Christine; Valencia, Alfonso; Ranea, Juan A. G.

    In: P L o S One, Vol. 7, No. 3, 2012, p. e31813.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  497. Published

    Upregulation of TGF-beta 1 in neonates of mothers receiving Influenza A (H1N1) vaccination during pregnancy. / Bischoff, Anne Louise; Folsgaard, N.; Bisgaard, H.; Rasmussen, M.; Pedersen, Susanne Brix.

    In: Allergy, Vol. 67, No. s96, 2012, p. 475.

    Publication: Research - peer-reviewConference abstract in journal – Annual report year: 2012

  498. Published

    Wide Distribution of Closely Related, Antibiotic-Producing Arthrobacter Strains throughout the Arctic Ocean. / Wietz, Matthias; Månsson, Maria; Bowman, Jeff S.; Blom, Nikolaj; Ng, Yin; Gram, Lone.

    In: Applied and Environmental Microbiology, Vol. 78, No. 6, 2012, p. 2039-2042.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  499. 2011
  500. Published

    Integrative Systems Biology: Elucidating Complex Traits. / Pers, Tune Hannes; Brunak, Søren (Supervisor).

    Kgs. Lyngby, Denmark : Technical University of Denmark (DTU), 2011. 161 p.

    Publication: ResearchPh.D. thesis – Annual report year: 2011

  501. Published

    Prediction of protein structural features by use of artificial neural networks. / Petersen, Bent; Lundegaard, Claus (Supervisor); Petersen, Thomas Nordahl (Supervisor).

    Kgs. Lyngby, Denmark : Technical University of Denmark (DTU), 2011. 122 p.

    Publication: ResearchPh.D. thesis – Annual report year: 2011

  502. Published

    Relationship of Extreme Chromosomal Instability with Long-term Survival in a Retrospective Analysis of Primary Breast Cancer. / Roylance, Rebecca; Endesfelder, David; Gorman, Patricia; Sander, Jil; Tomlinson, Ian; M. Hanby, Andrew; Speirs, Valerie; L. Richardson, Andrea; Birkbak, Nicolai Juul; Eklund, Aron Charles; Downward, Julian; Kschischo, Maik; Szallasi, Zoltan Imre; Swanton, Charles.

    In: Cancer Epidemiology, Biomarkers & Prevention, 22.07.2011, p. 2184-2197.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  503. Published

    Using Compound-Protein Interactions and Systems Biology to Study Environmental Effects on diseases development. / Weinhold, Nils; Brunak, Søren (Supervisor).

    Kgs. Lyngby, Denmark : Technical University of Denmark (DTU), 2011.

    Publication: ResearchPh.D. thesis – Annual report year: 2011

  504. Published

    Protein Interactions and Phenotype Association for Disease Finding. / Roque, francisco jose sousa simôes almeida; Brunak, Søren (Supervisor).

    Kgs. Lyngby, Denmark : Technical University of Denmark (DTU), 2011.

    Publication: ResearchPh.D. thesis – Annual report year: 2011

  505. Published

    A breast cancer meta-analysis of two expression measures of chromosomal instability reveals a relationship with younger age at diagnosis and high risk histopathological variables.. / Endesfelder, David; McGranahan, Nicholas; Birkbak, Nicolai Juul; Szallasi, Zoltan Imre; Kschischo, Maik; A. Graham, Trevor; Swanton, Charles.

    In: OncoTarget, 2011.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

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