Center for Biological Sequence Analysis

  1. 2016
  2. Published

    Chemosensory perception, symptoms and autonomic responses during chemical exposure in multiple chemical sensitivity. / Andersson, Linus; Claeson, Anna Sara; Dantoft, Thomas Meinertz; Skovbjerg, Sine; Lind, Nina; Nordin, Steven.

    In: International Archives of Occupational and Environmental Health, Vol. 89, No. 1, 2016, p. 79-88.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  3. E-pub ahead of print

    Control of lysosomal biogenesis and Notch-dependent tissue patterning by components of the TFEB-V-ATPase axis in Drosophila melanogaster. / Tognon, Emiliana; Kobia, Francis; Busi, Ilaria; Fumagalli, Arianna; De Masi, Federico; Vaccari, Thomas.

    In: Autophagy, 2016.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  4. Published

    Effect of Vitamin D3 Supplementation During Pregnancy on Risk of Persistent Wheeze in the Offspring A Randomized Clinical Trial : A Randomized Clinical Trial. / Chawes, Bo L.; Bonnelykke, Klaus; Stokholm, Jakob; Vissing, Nadja H.; Bjarnadottir, Elin; Schoos, Ann-Marie M.; Wolsk, Helene M.; Pedersen, Tine Marie; Vinding, Rebecca K.; Thorsteinsdottir, Sunna; Arianto, Lambang; Hallas, Henrik W.; Heickendorff, Lene; Pedersen, Susanne Brix; Rasmussen, Morten A.; Bisgaard, Hans Flinker.

    In: J A M A: The Journal of the American Medical Association, Vol. 315, No. 4, 2016, p. 353-361.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  5. E-pub ahead of print

    Fish oil supplementation from 9 to 18 months of age affects the insulin-like growth factor axis in a sex-specific manner in Danish infants. / Damsgaard, Camilla T.; Harsløf, Laurine B. S.; Andersen, Anders D.; Hellgren, Lars; Michaelsen, Kim F.; Lauritzen, Lotte.

    In: British Journal of Nutrition, 2016.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  6. Published

    Gapped sequence alignment using artificial neural networks: application to the MHC class I system. / Andreatta, Massimo; Nielsen, Morten.

    In: Bioinformatics (Online), Vol. 32, No. 4, btv639, 2016, p. 511-517.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  7. Published

    Immunogenicity of HLA Class I and II Double Restricted Influenza A-Derived Peptides. / Pedersen, Sara Ram; Christensen, Jan Pravsgaard; Buus, Søren; Rasmussen, Michael; Korsholm, Karen Smith; Nielsen, Morten; Claesson, Mogens Helweg.

    In: P L o S One, Vol. 11, No. 1, e0145629, 2016.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  8. Accepted/In press

    Propionibacterium acnes – disease causing agent or common contaminant? Detection in diverse patient samples by next generation sequencing. / Mollerup, Sarah; Friis-Nielsen, Jens; Vinner, Lasse; Richter, Stine Raith; Fridholm, Helena; Herrera, Jose Romero; Lund, Ole; Brunak, Søren; Gonzalez-Izarzugaza, Jose Maria; Mourier, Tobias; Nielsen, Lars Peter; Hansen, Anders Johannes.

    In: Journal of Clinical Microbiology, 2016.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  9. Published

    LOX1 inhibition with small molecules. / Gousiadou, Chryssoula; Kouskoumvekaki, Irene.

    In: Journal of Molecular Graphics and Modelling, Vol. 63, 2016, p. 99-109.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  10. Published

    MECP2 Is a Frequently Amplified Oncogene with a Novel Epigenetic Mechanism That Mimics the Role of Activated RAS in Malignancy. / Neupane, Manish; Clark, Allison P.; Landini, Serena; Birkbak, Nicolai Juul; Eklund, Aron Charles; Lim, Elgene; Culhane, Aedin C.; Barry, William T.; Schumacher, Steven E.; Beroukhim, Rameen; Szallasi, Zoltan Imre; Vidal, Marc; Hill, David E.; Silver, Daniel P.

    In: Cancer Discovery, Vol. 6, No. 1, 2016, p. 45-58.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  11. E-pub ahead of print

    Predicting Subcellular Localization of Proteins by Bioinformatic Algorithms. / Nielsen, Henrik.

    Protein Export in Gram-positive Bacteria. ed. / F. Bagnoli; R. Rappuoli. 2016. (Current Topics in Microbiology and Immunology).

    Publication: Research - peer-reviewBook chapter – Annual report year: 2016

  12. Published

    Quantification of oxidative stress phenotypes based on high-throughput growth profiling of protein kinase and phosphatase knockouts. / Altıntaş, Ali; Martini, Jacopo; Mortensen, Uffe Hasbro; Workman, Christopher T.

    In: Fems Yeast Research, Vol. 16, No. 1, fov101, 2016.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  13. Accepted/In press

    Siblings Promote a Type 1/Type 17-oriented immune response in the airways of asymptomatic neonates. / Wolsk, Helene Mygind; Chawes, Bo L.; Følsgaard, Nilofar V.; Rasmussen, Morten A.; Pedersen, Susanne Brix; Bisgaard, Hans Flinker.

    In: Allergy, 2016.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  14. Accepted/In press

    T cell recognition is shaped by epitope sequence conservation in the host proteome and microbiome. / Bresciani, Anne Gøther; Paul, Sinu; Schommer, Nina; Dillon, Myles B.; Bancroft, Tara; Greenbaum, Jason; Sette, Alessandro; Nielsen, Morten; Peters, Bjoern.

    In: Immunology, 2016.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  15. Published

    The elusive endogenous adipogenic PPARγ agonists: Lining up the suspects. / Hallenborg, Philip; Petersen, Rasmus K.; Kouskoumvekaki, Irene; Newman, John W.; Madsen, Lise; Kristiansen, Karsten.

    In: Progress in Lipid Research, Vol. 61, 2016, p. 149-162.

    Publication: Research - peer-reviewReview – Annual report year: 2016

  16. E-pub ahead of print

    The Length Distribution of Class I-Restricted T Cell Epitopes Is Determined by Both Peptide Supply and MHC Allele-Specific Binding Preference. / Trolle, Thomas; McMurtrey, Curtis P.; Sidney, John; Bardet, Wilfried; Osborn, Sean C.; Kaever, Thomas; Sette, Alessandro; Hildebrand, William H.; Nielsen, Morten; Peters, Bjoern.

    In: Journal of Immunology, 2016, p. 1480-1487.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  17. Published

    wKinMut-2: Identification and Interpretation of Pathogenic Variants in Human Protein Kinases. / Vazquez, Miguel; Pons, Tirso; Brunak, Søren; Valencia, Alfonso; Gonzalez-Izarzugaza, Jose Maria.

    In: Human Mutation, Vol. 37, No. 1, 2016, p. 36-42.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  18. 2015
  19. Published

    A catalog of the mouse gut metagenome. / Xiao, Liang; Feng, Qiang; Liang, Suisha; Sonne, Si Brask; Xia, Zhongkui; Qiu, Xinmin; Li, Xiaoping; Long, Hua; Zhang, Jianfeng; Zhang, Dongya; Liu, Chuan; Fang, Zhiwei; Chou, Joyce; Glanville, Jacob; Hao, Qin; Kotowska, Dorota; Colding, Camilla; Licht, Tine Rask; Wu, Donghai; Yu, Jun; Sung, Joseph Jao Yiu; Liang, Qiaoyi; Li, Junhua; Jia, Huijue; Lan, Zhou; Tremaroli, Valentina; Dworzynski, Piotr; Nielsen, H Bjørn; Bäckhed, Fredrik; Doré, Joël; Le Chatelier, Emmanuelle; Ehrlich, S. Dusko; Lin, John C.; Arumugam, Manimozhiyan; Wang, Jun; Madsen, Lise; Kristiansen, Karsten.

    In: Nature Biotechnology, Vol. 33, No. 10, 2015, p. 1103-1108.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  20. Published

    Accurate pan-specific prediction of peptide-MHC class II binding affinity with improved binding core identification. / Andreatta, Massimo; Karosiene, Edita; Rasmussen, Michael; Stryhn, Anette; Buus, Søren; Nielsen, Morten.

    In: Immunogenetics, Vol. 67, No. 11-12, 2015, p. 641-650.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  21. E-pub ahead of print
  22. Published

    Acquisition of docetaxel resistance in breast cancer cells reveals upregulation of ABCB1 expression as a key mediator of resistance accompanied by discrete upregulation of other specific genes and pathways.. / Ninel Hansen, Stine; Westergaard, David ; Borg Houlberg Thomsen, Mathilde; Vistesen, Mette; Nguyen Do, Khoa; Fogh, Louise; Belling, Kirstine C.; Wang, Jun; Yang, Huanming; Gupta, Ramneek; Ditzel, Henrik Jørn; Moreira, José ; Brünner, Nils; Stenvang, Jan; Schrohl, Anne-Sofie.

    In: Tumor Biology, Vol. 36, No. 6, 2015, p. 4327-4338.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  23. Published

    A global reference for human genetic variation. / Auton, Adam; Abecasis, Goncalo R.; M. Altshuler, David; M. Durbin, Richard; R. Bentley, David; Chakravarti, Aravinda; G. Clark, Andrew; Donnelly, Peter; E. Eichler, Evan; Flicek, Paul; Wang, Jun; Feng, Qiang; Fang, Xiaodong; Guo, Xiaosen; Jian, Min; Jiang, Hui; Liu, Xiao; Fang, Lin; Cao, Hongzhi; Jespersen, Jakob Berg.

    In: Nature, Vol. 526, 2015, p. 68-74.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  24. Published

    Airway Mucosal Immune-suppression in Neonates of Mothers Receiving A(H1N1)pnd09 Vaccination During Pregnancy. / Pedersen, Susanne Brix; Bischoff, Anne L.; Folsgaard, Nilofar V.; Vissing, Nadja H.; Birch, Sune; Bisgaard, Hans .

    In: Pediatric Infectious Disease Journal, Vol. 34, No. 1, 2015, p. 84-90.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  25. Published

    AllelicImbalance: An R/ bioconductor package for detecting, managing, and visualizing allele expression imbalance data from RNA sequencing. / Gådin, Jesper R.; van't Hooft, Ferdinand M.; Eriksson, Per; Folkersen, Lasse.

    In: BMC Bioinformatics, Vol. 16, No. 194, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  26. Published

    A modern approach for epitope prediction: identification of foot-and-mouth disease virus peptides binding bovine leukocyte antigen (BoLA) class I molecules. / Pandya, Mital; Rasmussen, Michael; Hansen, Andreas; Nielsen, Morten; Buus, Søren; Golde, William; Barlow, John.

    In: Immunogenetics, Vol. 67, No. 11-12, 2015, p. 691-703.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  27. Published

    Analysis artefacts of the INS-IGF2 fusion transcript. / Wernersson, Rasmus; Frogne, Thomas; Rescan, Claude; Hansson, Lena; Bruun, Christine; Grønborg, Mads; Jensen, Jan Nygaard; Madsen, Ole Dragsbæk.

    In: B M C Molecular Biology, Vol. 16, No. 13, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  28. Published

    A novel genomic alteration of LSAMP associates with aggressive prostate cancer in African American men. / Petrovics, Gyorgy; Li, Hua; Stümpel, Tanja; Tan, Shyh-Han; Young, Denise; Katta, Shilpa; Li, Qiyuan; Ying, Kai; Klocke, Bernward; Ravindranath, Lakshmi; Kohaar, Indu; Chen, Yongmei; Ribli, Dezső; Grote, Korbinian; Zou, Hua; Cheng, Joseph; Dalgard, Clifton L.; Zhang, Shimin; Csabai, Istvan; Kagan, Jacob; Takeda, David; Loda, Massimo; Scherf, Matthias; Seifert, Martin; Gaiser, Timo; McLeod, David G.; Szallasi, Zoltan Imre; Ebner, Reinhard; Werner, Thomas; Sesterhenn, Isabell A; Freedman, Matthew; Dobi, Albert; Srivastava, Shiv.

    In: EBioMedicine, Vol. 2, No. 12, 2015, p. 1957-1964.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  29. Published

    A novel in vitro wound biofilm model used to evaluate low-frequency ultrasonic-assisted wound debridement. / Crone, S.; Garde, Christian; Bjarnsholt, T.; Alhede, Morten.

    In: Journal of Wound Care, Vol. 24, No. 2, 2015, p. 64-72.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  30. Published

    Applying genetics in inflammatory disease drug discovery. / Folkersen, Lasse; Biswas, Shameek; Frederiksen, Klaus Stensgaard; Keller, Pernille; Fox, Brian; Fleckner, Jan.

    In: Drug Discovery Today, Vol. 20, No. 10, 2015, p. 1176-1181.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  31. Published

    A proteomic study of the regulatory role for STAT-1 in cytokine-induced beta-cell death. / Rondas, Dieter; Gudmundsdottir, Valborg; D’Hertog, Wannes; Crèvecoeur, Inne; Waelkens, Etienne; Brunak, Søren; Mathieu, Chantal; Overbergh, Lut.

    In: Proteomics - Clinical Applications, Vol. 9, No. 9-10, 2015, p. 938-952.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  32. Published

    Archival Bone Marrow Samples: Suitable for Multiple Biomarker Analysis?. / Lund, Bendik; Najmi, A. Laeya; Wesolowska, Agata; Landsem, Veslemoy M.; Rasmussen, Kirsten K.; Borst, Louise; Gupta, Ramneek; Schmiegelow, Kjeld; Klungland, Helge.

    In: Applied Immunohistochemistry & Molecular Morphology, Vol. 23, No. 1, 2015, p. 71-77.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  33. Published
  34. Published

    A retrospective metagenomics approach to studying Blastocystis. / Andersen, Lee O'Brien; Bonde, Ida; Nielsen, Henrik Bjørn; Stensvold, Christen Rune.

    In: F E M S Microbiology Reviews, Vol. 91, No. 7, fiv072, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  35. Published

    Automated benchmarking of peptide-MHC class I binding predictions. / Trolle, Thomas; Metushi, Imir G.; Greenbaum, Jason; Kim, Yohan; Sidney, John; Lund, Ole; Sette, Alessandro; Peters, Bjoern; Nielsen, Morten.

    In: Bioinformatics, Vol. 31, No. 13, 2015, p. 2174-2181.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  36. Published

    Bioinformatics prediction of swine MHC class I epitopes from Porcine Reproductive and Respiratory Syndrome Virus. / Welner, Simon; Nielsen, Morten; Lund, Ole; Jungersen, Gregers; Larsen, Lars Erik.

    2015. Abstract from Keystone Symposia on Molecular and Cellular Biology: Accelerating life science discovery, Keystone, United States.

    Publication: Research - peer-reviewConference abstract for conference – Annual report year: 2015

  37. Published

    CAUSEL: an epigenome- and genome-editing pipeline for establishing function of noncoding GWAS variants.. / Spisák, Sándor; Lawrenson, Kate; Fu, Yanfang; Csabai, Istvan; Cottman, Rebecca T.; Seo, Ji-Heui; Haiman, Christopher; Han, Ying; Lenci, Romina; Li, Qiyuan; Tisza, Viktória; Szallasi, Zoltan Imre; Herbert, Zachery T.; Chabot, Matthew; Pomerantz, Mark; Solymosi, Norbert; Gayther, Simon A.; Joung, J. Keith; Freedman, Matthew L.

    In: Nature Medicine, Vol. 21, No. 11, 2015, p. 1357-1363.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  38. Published
  39. Published

    Clonal status of actionable driver events and the timing of mutational processes in cancer evolution. / McGranahan, Nicholas; Favero, Francesco; de Bruin, Elza C.; Birkbak, Nicolai Juul; Szallasi, Zoltan Imre; Swanton, Charles.

    In: Science Translational Medicine, Vol. 7, No. 283, 283ra54, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  40. Published

    Convolutional LSTM Networks for Subcellular Localization of Proteins. / Sønderby, Søren Kaae; Sønderby, Casper Kaae; Nielsen, Henrik; Winther, Ole.

    Algorithms for Computational Biology: Second International Conference, AlCoB 2015, Mexico City, Mexico, August 4-5, 2015, Proceedings. ed. / Adrian-Horia Dediu; Francisco Hernández-Quiroz; Carlos Martín-Vide; David A. Rosenblueth. Vol. 9199 Springer International Publishing, 2015. p. 68-80 (Lecture Notes in Computer Science).

    Publication: Research - peer-reviewArticle in proceedings – Annual report year: 2015

  41. Published

    Convolutional LSTM Networks for Subcellular Localization of Proteins. / Nielsen, Henrik; Sønderby, Søren Kaae; Sønderby, Casper Kaae; Winther, Ole.

    2015. Abstract from First Annual Danish Bioinformatics Conference, Odense, Denmark.

    Publication: Research - peer-reviewConference abstract for conference – Annual report year: 2015

  42. Published

    Creation of Functional Viruses from Non-Functional cDNA Clones Obtained from an RNA Virus Population by the Use of Ancestral Reconstruction. / Fahnøe, Ulrik; Pedersen, Anders Gorm; Dräger, Carolin; Orton, Richard J; Blome, Sandra; Höper, Dirk; Beer, Martin; Rasmussen, Thomas Bruun.

    In: P L o S One, Vol. 10, No. 10, e0140912, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  43. Published

    Cyclebase 3.0: a multi-organism database on cell-cycle regulation and phenotypes. / Santos Delgado, Alberto; Wernersson, Rasmus; Jensen, Lars Juhl.

    In: Nucleic Acids Research, Vol. 43, No. D1, gku1092, 2015, p. D1140-D1144.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  44. Published

    Danger in the reef : proteome, toxicity, and neutralization of the venom of the olive sea snake, Aipysurus laevis. / Laustens, Andreas H.; Gutiérrez, José Maria; Redsted Rasmussen, Arne; Engmark, Mikael; Gravlund, Peter; Sanders, Kate L.; Lohse, Brian; Lomonte, Bruno.

    In: Toxicon, Vol. 107, No. Part B, 2015, p. 187-196.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  45. Published

    Defining the HLA class I-associated viral antigen repertoire from HIV-1-infected human cells. / Ternette, Nicola; Yang, Hongbing; Partridge, Thomas; Llano, Anuska; Cedeño, Samandhy; Fischer, Roman; Charles, Philip D.; Dudek, Nadine L.; Mothe, Beatriz; Crespo, Manuel; Fischer, William M.; Korber, Bette T. M.; Nielsen, Morten; Borrow, Persephone; Purcell, Anthony W.; Brander, Christian; Dorrell, Lucy; Kessler, Benedikt M.; Hanke, Tomáš.

    In: European Journal of Immunology, Vol. 46, No. 1, 2015, p. 60-69.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  46. Published

    Defining the microbial effluxome in the content of the host-microbiome interaction. / Ioannidis, Anastasios; Magana, Maria; Bologa, Cristian G.; Oprea, Tudor I.; Paulsen, Ian T.; Tegos, George P.

    In: Frontiers in Pharmacology, Vol. 6, 31, 2015.

    Publication: Research - peer-reviewComment/debate – Annual report year: 2015

  47. Published

    Determination of specificity influencing residues for key transcription factor families. / Patel, Ronak Y.; Garde, Christian; Stormo, Gary D.

    In: Quantitative Biology, Vol. 3, No. 3, 2015, p. 115-123.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  48. Published

    Developing a Molecular Roadmap of Drug-Food Interactions. / Jensen, Kasper; Ni, Yueqiong; Panagiotou, Gianni; Kouskoumvekaki, Irene.

    In: P L o S Computational Biology (Online), Vol. 11, No. 2, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  49. Published

    Discovery, genotyping and characterization of structural variation and novel sequence at single nucleotide resolution from de novo genome assemblies on a population scale. / Liu, Siyang; Huang, Shujia; Rao, Junhua; Ye, Weijian; Schierup, Mikkel H.; Villesen, Palle ; Xu, Xun; Li, Ning; Kristiansen, Karsten; Sørensen, Thorkild I. A.; Hansen, Torben; Pedersen, Oluf; Brunak, Søren; Gupta, Ramneek; Rasmussen, Simon; Lund, Ole; Bolund, Lars; Børglum, Anders D.; Eiberg, Hans; Nørgaard Flindt, Esben; Xu, Ruiqi; Sun, Jihua; Liu, Hao ; Jiang, Hui; Wang, Ou ; Cheng, Xiaofang ; Demontis, Ditte ; Besenbacher, Søren; Mailund, Thomas; Friborg, Rune M. ; Pedersen, Christian N. S.; Liu, Siyang; Chang, Yuqi; Li, Shengting; Guo, Xiaosen; Cao, Hongzhi; Ye, Chen; Maretty, Lasse; Andreas Sibbesen, Jonas; Albrechtsen, Anders; Bork-Jensen, Jette; Theil Have, Christian; Gonzalez-Izarzugaza, Jose Maria; Belling, Kirstine González-Izarzugaza; Yadav, Rachita; Grove, Jakob; Dam-Als, Thomas; Lescai, Francesco; Krogh, Anders; Wang, Jun.

    In: GigaScience, Vol. 4, No. 64, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  50. Published

    Disentangling type 2 diabetes and metformin treatment signatures in the human gut microbiota. / Forslund, Kristoffer; Hildebrand, Falk ; Nielsen, Trine N.; Falony, Gwen; Le Chatelier, Emmanuelle; Sunagawa, Shinichi; Prifti, Edi; Vieira-Silva, Sara ; Gudmundsdottir, Valborg; Pedersen, Helle Krogh; Arumugam, Manimozhiyan; Kristiansen, Karsten; Yvonne Voig, Anita; Vestergaard, Henrik; Hercog, Rajna; Costea, Paul Igor; Kultima, Jens Roat; Li, Junhua; Jørgensen, Torben; Levenez, Florence; Dore, Joël; Nielsen, Henrik Bjørn; Brunak, Søren; Raes, Jeroen; Hansen, Torben; Wang, Jun; Ehrlich, S. Dusko; Bork, Peer; Pedersen, Oluf.

    In: Nature, Vol. 528, No. 7581, 2015, p. 262-266.

    Publication: Research - peer-reviewLetter – Annual report year: 2015

  51. Published

    Distinct inflammatory and cytopathic characteristics of Escherichia coli isolates from inflammatory bowel disease patients. / Jensen, Stina Rikke; Mirsepasi-Lauridsen, Hengameh Chloé; Thysen, Anna Hammerich; Brynskov, Jørn; Krogfelt, Karen Angeliki; Petersen, Andreas Munk; Pedersen, Anders Elm; Brix, Susanne.

    In: International Journal of Medical Microbiology, Vol. 305, No. 8, 2015, p. 925-936.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  52. Published

    Distinct summer and winter bacterial communities in the active layer of Svalbard permafrost revealed by DNA- and RNA-based analyses. / Schostag, Morten; Stibal, Marek; Jacobsen, Carsten S.; Bælum, Jacob; Tas, Neslihan; Elberling, Bo; Jansson, Janet K.; Semenchuk, Philipp; Prieme, Anders.

    In: Frontiers in Microbiology, Vol. 6, 399, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  53. E-pub ahead of print

    Divergent Response Profile in Activated Cord Blood T cells from First-born Child Implies Birth-order-associated in Utero Immune Programming. / Kragh, Marie; Larsen, Jeppe Madura; Thysen, Anna Hammerich; Rasmussen, Morten Arendt; Wolsk, Helene Mygind; Bisgaard, Hans Flinker; Pedersen, Susanne Brix.

    In: Allergy, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  54. Published

    Dual Action of Lysophosphatidate-Functionalised Titanium: Interactions with Human (MG63) Osteoblasts and Methicillin Resistant Staphylococcus aureus. / Skindersø, Mette Elena; Krogfelt, Karen Angeliki; Blom, Ashley; Jiang, Guowei; Prestwich, Glenn D; Mansell, Jason Peter.

    In: P L o S One, Vol. 10, No. 11, e0143509, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  55. Published

    Early Divergent Strains of Yersinia pestis in Eurasia 5,000 Years Ago. / Rasmussen, Simon; Allentoft, Morten Erik; Nielsen, Kasper; Orlando, Ludovic; Sikora, Martin; Sjögren, Karl-Göran; Pedersen, Anders Gorm; Schubert, Mikkel; Van Dam, Alex; Kapel, Christian Moliin Outzen; Nielsen, Henrik Bjørn; Brunak, Søren; Avetisyan, Pavel; Epimakhov, Andrey; Khalyapin, Mikhail Viktorovich; Gnuni, Artak; Kriiska, Aivar; Lasak, Irena; Metspalu, Mait; Moiseyev, Vyacheslav; Gromov, Andrei; Pokutta, Dalia; Saag, Lehti; Varul, Liivi; Yepiskoposyan, Levon; Sicheritz-Pontén, Thomas; Foley, Robert A; Lahr, Marta Mirazón; Nielsen, Rasmus; Kristiansen, Kristian; Willerslev, Eske.

    In: Cell, Vol. 163, No. 3, 2015, p. 571-582.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  56. Published

    Ebolavirus comparative genomics. / Jun, Se-Ran; Leuze, Michael R.; Nookaew, Intawat; Uberbacher, Edward C.; Land, Miriam; Zhang, Qian; Wanchai, Visanu; Chai, Juanjuan; Nielsen, Morten; Trolle, Thomas; Lund, Ole; Buzard, Gregory S.; Pedersen, Thomas Dybdal; Wassenaar, Trudy M.; Ussery, David W.

    In: F E M S Microbiology Reviews, Vol. 479, No. 1, fuv031, 2015, p. 764-778.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  57. Published

    Environmental genes and genomes: understanding the differences and challenges in the approaches and software for their analyses. / Mendoza, Marie Lisandra Zepeda; Sicheritz-Pontén, Thomas; Gilbert, M. Thomas P.

    In: Briefings in Bioinformatics, Vol. 16, No. 5, 2015, p. 745-758.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  58. Published

    Establishment and characterization of models of chemotherapy resistance in colorectal cancer: Towards a predictive signature of chemoresistance. / Jensen, Niels F.; Stenvang, Jan; Beck, Mette Kristina; Hanáková, Barbora; Belling, Kirstine C.; Nguyen Do, Khoa; Viuff, Birgitte; Nygård, Sune B.; Gupta, Ramneek; Rasmussen, Mads H.; Tarpgaard, Line S.; Hansen, Tine P.; Budinská, Eva; Pfeiffer, Per; Bosman, Fred; Tejpar, Sabine; Roth, Arnaud; Delorenzi, Mauro; Andersen, Claus L.; Rømer, Maria U.; Brünner, Nils; Moreira, José M.A.

    In: Molecular Oncology, Vol. 9, No. 6, 2015, p. 1169-1185.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  59. Published

    Evidence of interactions between aroma compounds and the CB1 receptor opens new routes for regulation of food intake. / Le Bon, Anne-Marie; Audouze, Karine Marie Laure; Taboureau, Olivier ; Burton, Kathryn; Belloir, Christine; Desmetz, Catherine; Brunak, Søren; Guichard, Elisabeth; Tromelin, Anne.

    In: Chemical Senses, Vol. 40, No. 3, 2015, p. 280-280.

    Publication: Research - peer-reviewConference abstract in journal – Annual report year: 2015

  60. Published

    Evolutionary Genomics and Conservation of the Endangered Przewalski’s Horse. / Der Sarkissian, Clio; Ermini, Luca; Schubert, Mikkel; Yang, Melinda A.; Librado, Pablo; Fumagalli, Matteo; Jónsson, Hákon; Bar-Gal, Gila Kahila; Albrechtsen, Anders; Vieira, Filipe G.; Petersen, Bent; Ginolhac, Aurélien; Seguin-Orlando, Andaine; Magnussen, Kim; Fages, Antoine; Gamba, Cristina; Lorente-Galdos, Belen; Polani, Sagi; Steiner, Cynthia; Neuditschko, Markus; Jagannathan, Vidhya; Feh, Claudia; Greenblatt, Charles L.; Ludwig, Arne; Abramson, Natalia I.; Zimmermann, Waltraut; Schafberg, Renate; Tikhonov, Alexei; Sicheritz-Pontén, Thomas; Willerslev, Eske; Marques-Bonet, Tomas; Ryder, Oliver A.; McCue, Molly; Rieder, Stefan; Leeb, Tosso; Slatkin, Montgomery; Orlando, Ludovic.

    In: Current Biology, Vol. 25, No. 19, 2015, p. 2577-2583.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  61. Published

    Evolution of substrate recognition sites (SRSs) in cytochromes P450 from Apiaceae exemplified by the CYP71AJ subfamily. / Dueholm, Bjørn; Krieger, Celia; Drew, Damian; Olry, Alexandre; Kamo, Tsunashi; Taboureau, Olivier ; Weitzel, Corinna; Bourgaud, Frederic; Hehn, Alain; Simonsen, Henrik Toft.

    In: B M C Evolutionary Biology, Vol. 15, No. 122, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  62. Published
  63. Published

    FluKB: A Knowledge-Based System for Influenza Vaccine Target Discovery and Analysis of the Immunological Properties of Influenza Viruses. / Simon, Christian; Kudahl, Ulrich Johan; Sun, Jing; Olsen, Lars Rønn; Zhang, Guang Lan; Reinherz, Ellis L.; Brusic, Vladimir.

    In: Journal of Immunology Research, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  64. Published

    Functional Analysis of a Carotid Intima-Media Thickness Locus Implicates BCAR1 and Suggests a Causal Variant. / Boardman-Pretty, Freya; Smith, Andrew J. P.; Cooper, Jackie; Palmen, Jutta; Folkersen, Lasse; Hamsten, Anders; Catapano, Alberico L.; Melander, Olle; Price, Jacqueline F.; Kumari, Meena; Deanfield, John E.; Kivimäki, Mika; Gertow, Karl; Baragetti, Andrea; Norata, Giuseppe Danilo; Humphries, Steve E.

    In: Circulation: Cardiovascular Genetics, Vol. 8, No. 5, 2015, p. 696-706.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  65. Published

    Gene expression analysis identifies global gene dosage sensitivity in cancer. / Fehrmann, Rudolf S. N.; Karjalainen, Juha M.; Krajewska, Malgorzata; Westra, Harm-Jan; Maloney, David; Simeonov, Anton; Pers, Tune Hannes; Hirschhorn, Joel N.; Jansen, Ritsert C.; Schultes, Erik A.; van Haagenl, Herman H. H. B. M.; de Vries, Elisabeth G. E.; Meerman, Gerard J. te; Wijmenga, Cisca; van Vugt, Marcel A. T. M.; Franke, Lude.

    In: Nature Genetics, Vol. 47, No. 2, 2015, p. 115-125.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  66. Published

    Genetic studies of body mass index yield new insights for obesity biology. / Locke, Adam E.; Kahali, Bratati; Berndt, Sonja I.; Justice, Anne E.; R. Day, Felix; Powell, Corey; Vedantam, Sailaja; L. Buchkovich, Martin; Yang, Jian; Croteau-Chonka, Damien C.; Pers, Tune Hannes; Feenstra, Bjarke; Boyd, Heather A.; Geller, Frank; Lyssenko, Valeriya; Melbye, Mads.

    In: Nature, Vol. 518, No. 7538, 2015, p. 197-206.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  67. Published

    Genomic Dissection of Travel-Associated Extended-Spectrum-Beta-Lactamase-Producing Salmonella enterica Serovar Typhi Isolates Originating from the Philippines: a One-Off Occurrence or a Threat to Effective Treatment of Typhoid Fever?. / Hendriksen, Rene S.; Leekitcharoenphon, Pimlapas; Mikoleit, Matthew; Jensen, Jacob Dyring; Kaas, Rolf Sommer; Roer, Louise; Joshi, Heena B.; Pornruangmong, Srirat; Pulsrikarn, Chaiwat; Gonzalez-Aviles, Gladys D.; Reuland, E. Ascelijn; Al Naiemi, Nashwan; Wester, Astrid Louise; Aarestrup, Frank Møller; Hasman, Henrik.

    In: Journal of Clinical Microbiology, Vol. 53, No. 2, 2015, p. 677-680.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  68. Published

    Genomic Epidemiology. / Lund, Ole; Thomsen, Martin; Bellod Cisneros, Jose Luis; Ahrenfeldt, Johanne; Tetzschner, Anna Maria Malberg; Leekitcharoenphon, Shinny; Kaas, Rolf Sommer; Lukjancenko, Oksana; Aarestrup, Frank.

    Book of Abstracts. DTU's Sustain Conference 2015. Lyngby : Technical University of Denmark, 2015. Q-7.

    Publication: Research - peer-reviewConference abstract in proceedings – Annual report year: 2015

  69. Published

    Genomic evidence for the Pleistocene and recent population history of Native Americans. / Raghavan, Maanasa; Steinruecken, Matthias; Harris, Kelley; Schiffels, Stephan; Rasmussen, Simon; DeGiorgio, Michael; Albrechtsen, Anders; Valdiosera, Cristina; Avila-Arcos, Maria C.; Malaspinas, Anna-Sapfo; Moreno-Mayar, J. Victor; Korneliussen, Thorfinn S.; Pierre, Tracey; Rasmussen, Morten; Campos, Paula F.; Damgaard, Peter De Barros; Allentoft, Morten E.; Seguin-Orlando, Andaine; Stafford, Thomas; Meltzer, David J.; Willerslev, Eske.

    In: Science, Vol. 349, No. 6250, aab3884, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  70. Published

    Genomic profiling of thousands of candidate polymorphisms predicts risk of relapse in 778 Danish and German childhood acute lymphoblastic leukemia patients. / Wesolowska, Agata; Borst, L.; Dalgaard, Marlene Danner; Yadav, Rachita; Rasmussen, K. K. ; Wehner, Peder Skov; Rasmussen, M.; Ørntoft, T.F.; Nordentoft, I.; Koehler, R.; Sicheritz-Pontén, Thomas; Gautier, Laurent; Brunak, Søren; Gupta, Ramneek.

    In: Leukemia, Vol. 29, 2015, p. 297-303.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  71. Published

    Genomic Signature of Multidrug-Resistant Salmonella enterica Serovar Typhi Isolates Related to a Massive Outbreak in Zambia between 2010 and 2012.. / Hendriksen, Rene S.; Leekitcharoenphon, Pimlapas; Lukjancenko, Oksana; Lukwesa-Musyani, Chileshe; Tambatamba, Bushimbwa; Mwaba, John; Kalonda, Annie; Nakazwe, Ruth; Kwenda, Geoffrey; Jensen, Jacob Dyring; Svendsen, Christina Aaby; Dittmann, Karen K.; Kaas, Rolf Sommer; Cavaco, Lina; Aarestrup, Frank Møller; Hasman, Henrik; Mwansa, James C. L.

    In: Journal of Clinical Microbiology, Vol. 53, No. 1, 2015, p. 262-272.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  72. Published

    Germ Cell Cancer and Multiple Relapses: Toxicity and Survival. / Lauritsen, Jakob; Kier, Maria G.G.; Mortensen, Mette S.; Bandak, Mikkel; Gupta, Ramneek; Holm, Niels V.; Agerbaek, Mads; Daugaard, Gedske.

    In: Journal of Clinical Oncology, Vol. 33, No. 28, 2015, p. 3116-3123.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  73. Published

    Gliadin affects glucose homeostasis and intestinal metagenome in C57BL6 mice fed a high-fat diet. / Zhang, Li; Hansen, Axel Kornerup; Bahl, Martin Iain; Hansen, Camilla Hartmann Friis; Andersen, Daniel; Pedersen, Susanne Brix; Hellgren, Lars; Licht, Tine Rask.

    2015. Abstract from Keystone Symposia - Gut Microbiota Modulation of Host Physiology: The Search for Mechanism, Keystone, Colorado, United States.

    Publication: Research - peer-reviewConference abstract for conference – Annual report year: 2015

  74. Published
  75. Published

    Glioblastoma adaptation traced through decline of an IDH1 clonal driver and macro-evolution of a double-minute chromosome. / Favero, Francesco; McGranahan, Nicholas; Salm, Maximilian P.; Birkbak, Nicolai Juul; Sanborn, J. Zachary ; Benz, Stephen C. ; Becq, Jennifer; Peden, John F. ; Kingsbury, Zoya ; Grocok, Russell J. ; Eklund, Aron Charles.

    In: Annals of Oncology, Vol. 26, No. 5, 2015, p. 880-887.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  76. Published

    Global gene expression profiling of brown to white adipose tissue transformation in sheep reveals novel transcriptional components linked to adipose remodeling. / Basse, Astrid L.; Dixen, Karen; Yadav, Rachita; Tygesen, Malin P.; Qvortrup, Klaus; Kristiansen, Karsten; Quistorff, Bjorn; Gupta, Ramneek; Wang, Jun; Hansen, Jacob B.

    In: B M C Genomics, Vol. 16, No. 215, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  77. Published

    Hand eczema and stratum corneum ceramides. / Jungersted, J. M.; Høgh, Julie Kaae; Hellgren, Lars; Wilkinson, S.; Jemec, G. B. E.; Agner, T.

    In: Clinical and Experimental Dermatology, Vol. 40, No. 3, 2015, p. 243-246.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  78. Published

    High-throughput epitope identification for snakebite antivenom. / Engmark, Mikael; De Masi, Federico; Laustsen, Andreas Hougaard; Gutiérrez, José María; Lomonte, Bruno; Andersen, Mikael Rørdam; Lund, Ole.

    2015. Poster session presented at The International Sustainability Conference 2015, Falmer, Brighton, United Kingdom.

    Publication: Research - peer-reviewPoster – Annual report year: 2015

  79. Published
  80. Published

    Identification of novel immune and barrier genes in atopic dermatitis by means of laser capture microdissection. / Esaki, Hitokazu; Ewald, David Adrian; Ungar, Benjamin; Rozenblit, Mariya; Zheng, Xiuzhong; Xu, Hui; Estrada, Yeriel D.; Peng, Xiangyu; Mitsui, Hiroshi; Litman, Thomas; Suarez-Farinas, Mayte; Krueger, James G.; Guttman-Yassky, Emma.

    In: Journal of Allergy and Clinical Immunology, Vol. 135, No. 1, 2015, p. 153-163.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  81. Published

    Identification of possible adverse drug reactions in clinical notes : the case of glucose-lowering medicines. / Warrer, Pernille; Jensen, Peter Bjødstrup; Aagaard, Lise; Jensen, Lars Juhl; Brunak, Søren; Krag, Malene Hammer; Rossing, Peter; Almdal, Thomas; Andersen, Henrik Ullits; Hansen, Ebba Holme.

    In: Journal of Research in Pharmacy Practice, Vol. 4, No. 2, 2015, p. 64-72.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  82. Published

    Identifying transcripts associated with aggressiveness in wheat yellow rust by transcriptomic sequencing. / Chen, Yan-Jun; Vogt, Josef Korbinian; Sørensen, Chris Khadgi; Rodriguez-Algaba, Julian; Sicheritz-Pontén, Thomas; Hovmøller, Mogens S.; Justesen, Annemarie Fejer.

    Abstracts : 14th International Cereal Rusts and Powdery Mildews Conference 2015. 2015. p. 106-106 (ARO Abstracts).

    Publication: Research - peer-reviewConference abstract in proceedings – Annual report year: 2015

  83. Published
  84. Published

    Individualization of treatments with drugs metabolized by CES1: combining genetics and metabolomics. / Rasmussen, Henrik B.; Bjerre, Ditte; Linnet, Kristian; Juergens, Gesche; Dalhoff, Kim; Stefansson, Hreinn; Hankemeier, Thomas; Kaddurah-Daouk, Rima; Taboureau, Olivier ; Brunak, Søren; Houmann, Tine; Jeppesen, Pia; Pagsberg, Anne Katrine; Plessen, Kerstin; Dyrborg, Jørgen; Hansen, Peter R.; Hansen, Poul Erik; Hughes, Tim; Werge, Thomas.

    In: Pharmacogenomics, Vol. 16, No. 6, 2015, p. 649-665.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  85. Published

    Inflammatory Mediator Profiling of n-butanol Exposed Upper Airways in Individuals with Multiple Chemical Sensitivity. / Dantoft, Thomas Meinertz; Skovbjerg, Sine; Andersson, Linus; Claeson, Anna-Sara; Lind, Nina; Nordin, Steven; Pedersen, Susanne Brix.

    In: P L o S One, Vol. 10, No. 11, e0143534, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  86. Published

    Inherited coding variants at the CDKN2A locus influence susceptibility to acute lymphoblastic leukaemia in children. / Xu, Heng; Zhang, Hui; Yang, Wenjian; Yadav, Rachita; Morrison, Alanna C.; Qian, Maoxiang; Devidas, Meenakshi; Liu, Yu; Perez-Andreu, Virginia; Zhao, Xujie; Hansen, Torben; Holm, Jens-Christian; Gupta, Ramneek.

    In: Nature Communications, Vol. 6, 7553, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  87. Published

    Insights from 20 years of bacterial genome sequencing. / Land, Miriam; Hauser, Loren; Jun, Se-Ran; Nookaew, Intawat; Leuze, Michael R.; Ahn, Tae-Hyuk; Karpinets, Tatiana; Lund, Ole; Kora, Guruprased; Wassenaar, Trudy; Poudel, Suresh; Ussery, David.

    In: Functional & Integrative Genomics, Vol. 15, No. 2, 2015, p. 141-161.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  88. Published

    Integration and visualization of non-coding RNA and protein interaction networks. / Junge, Alexander; Refsgaard, Jan Christian; Garde, Christian; Pan, Xiaoyong; Santos Delgado, Alberto; Anthon, Christian; Alkan, Ferhat; von Mering, Christian; Workman, Christopher; Jensen, Lars Juhl; Gorodkin, Jan.

    2015. Abstract from First Annual Danish Bioinformatics Conference, Odense, Denmark.

    Publication: Research - peer-reviewConference abstract for conference – Annual report year: 2015

  89. Published

    Integrative analysis of kinase networks in TRAIL-induced apoptosis provides a source of potential targets for combination therapy. / So, Jonathan; Pasculescu, Adrian; Dai, Anna Y.; Williton, Kelly; James, Andrew; Nguyen, Vivian; Creixell, Pau; Schoof, Erwin M.; Sinclair, John; Barrios-Rodiles, Miriam; Gu, Jun; Krizus, Aldis; Williams, Ryan; Olhovsky, Marina; Dennis, James W.; Wrana, Jeffrey L.; Linding, Rune; Jørgensen, Claus; Pawson, Tony; Colwill, Karen.

    In: Science Signaling, Vol. 8, No. 371, rs3, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  90. Published

    Integrative Systems Biology Applied to Toxicology. / Kongsbak, Kristine Grønning; Vinggaard, Anne Marie (Main supervisor); Eklund, Aron Charles (Supervisor); Audouze, Karine Marie Laure (Supervisor).

    Kgs. Lyngby : Technical University of Denmark, 2015. 167 p.

    Publication: ResearchPh.D. thesis – Annual report year: 2015

  91. Published

    Investigation of Human Cancers for Retrovirus by Low-Stringency Target Enrichment and High-Throughput Sequencing. / Vinner, Lasse ; Mourier, Tobias ; Friis-Nielsen, Jens; Gniadecki, Robert; Dybkaer, Karen; Rosenberg, Jacob; Levin Langhof, Jill; Flores Santa Cruz, David; Fonager, Jannik; Gonzalez-Izarzugaza, Jose Maria; Gupta, Ramneek; Sicheritz-Pontén, Thomas; Brunak, Søren; Willerslev, Eske; Nielsen, Lars Peter; Hansen, Anders Johannes .

    In: Scientific Reports, Vol. 5, 13201, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  92. Published

    Kinome-wide Decoding of Network-Attacking Mutations Rewiring Cancer Signaling. / Creixell, Pau; Schoof, Erwin M; Simpson, Craig D.; Longden, James; Miller, Chad J.; Lou, Hua Jane; Perryman, Lara; Cox, Thomas R; Zivanovic, Nevena; Palmeri, Antonio; Wesolowska, Agata; Helmer-Citterich, Manuela; Ferkinghoff-Borg, Jesper; Itamochi, Hiroaki; Bodenmiller, Bernd; Erler, Janine T.; Turk, Benjamin E.; Linding, Rune.

    In: Cell, Vol. 163, No. 1, 2015, p. 202-217.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  93. Published

    Levels of circulating MMP-7 degraded elastin are elevated in pulmonary disorders. / Kristensen, J.H.; Larsen, L.; Dasgupta, B.; Brodmerkel, C.; Curran, M.; Karsdal, M.A.; Sand, J.M.B.; Willumsen, N.; Knox, A.J.; Bolton, C.E.; Johnson, S.R.; Hägglund, Per; Svensson, Birte; Leeming, D. J.

    In: Clinical Biochemistry, Vol. 48, No. 16-17, 2015, p. 1083-1088.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  94. Published
  95. Published

    Long-chain polyunsaturated fatty acids in breast-milk and erythrocytes and neurodevelopmental outcomes in Danish late-preterm infants. / Andersen, Stine Brøndum; Hellgren, Lars I; Larsen, Mette Krogh; Verder, Henrik; Lauritzen, Lotte.

    In: Journal of Pregnancy and Child Health, Vol. 2, No. 3, 160, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  96. Published

    Long-term risk of cardiovascular and cerebrovascular disease after removal of the colonic microbiota by colectomy: a cohort study based on the Danish National Patient Register from 1996 to 2014. / Jensen, Anders Boeck; Ajslev, Teresa Adeltoft; Brunak, Søren; Sørensen, Thorkild I A.

    In: Open Journal of Ecology, Vol. 5, No. 12, e008702, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  97. Published

    LYRA, a webserver for lymphocyte receptor structural modeling.. / Schantz Klausen, Michael; Anderson, Mads Valdemar; Jespersen, Martin Closter; Nielsen, Morten; Marcatili, Paolo.

    In: Nucleic Acids Research, Vol. 43, No. W1, 2015, p. W349-W355.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  98. Published

    Meta-analysis derived atopic dermatitis (MADAD) transcriptome defines a robust AD signature highlighting the involvement of atherosclerosis and lipid metabolism pathways. / Ewald, David Adrian; Malajian, Dana; Krueger, James G.; Workman, Christopher T; Wang, Tianjiao; Tian, Suyan; Litman, Thomas; Guttman-Yassky, Emma; Suárez-Fariñas, Mayte.

    In: B M C Medical Genomics, Vol. 8, No. 60, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  99. Published

    Metagenomic analysis of microbial communities in rapid sand filter treating groundwater. Community diversity and metabolic potential. / Palomo, Alejandro; Rasmussen, S.; Sicheritz-Pontén, Thomas; Smets, Barth F.

    6th Congress of European Microbiologists (FEMS 2015) abstracts. 2015. FEMS-2068.

    Publication: Research - peer-reviewConference abstract in proceedings – Annual report year: 2015

  100. Published
  101. Published

    Metagenomic heterogeneity explains dual immune effects of endotoxins. / Pedersen, Susanne Brix; Eriksen, Carsten; Larsen, Jeppe Madura; Bisgaard, Hans Flinker.

    In: Journal of Allergy and Clinical Immunology, Vol. 135, No. 1, 2015, p. 277-280.

    Publication: Research - peer-reviewComment/debate – Annual report year: 2015

  102. Published

    Microbial Biofilm as a Smart Material. / Garde, Christian; Welch, Martin; Ferkinghoff-Borg, Jesper; Sams, Thomas.

    In: Sensors, Vol. 15, No. 2, 2015, p. 4229-4241.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

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