Center for Biological Sequence Analysis

  1. 2015
  2. Published

    Bioinformatics prediction of swine MHC class I epitopes from Porcine Reproductive and Respiratory Syndrome Virus. / Welner, Simon; Nielsen, Morten; Lund, Ole; Jungersen, Gregers; Larsen, Lars Erik.

    2015. Abstract from Keystone Symposia on Molecular and Cellular Biology: Accelerating life science discovery, Keystone, United States.

    Publication: Research - peer-reviewConference abstract for conference – Annual report year: 2015

  3. 2014
  4. Published
  5. Published

    Acute and perinatal-programming effects of a fat-rich diet on rat muscle mitochondrial function and hepatic lipid accumulation.. / Hellgren, Lars; Jensen, Runa I.; Waterstradt, Michelle S. G. ; Quistorff, Bjørn; Lauritzen, Lotte.

    In: Acta Obstetricia et Gynecologica Scandinavica, Vol. 93, 2014, p. 1170-1180.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  6. Published

    Adipose tissue trans fatty acids and changes in body weight and waist circumference. / Hansen, Camilla P.; Berentzen, Tina L.; Østergaard, Jane N.; Dahm, Christina C.; Hellgren, Lars; Schmidt, Erik B.; Tjønneland, Anne; Sørensen, Thorkild I. A.; Overvad, Kim; Jakobsen, Marianne U.

    In: The British Journal of Nutrition, Vol. 111, No. 7, 2014, p. 1283-1291.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  7. Published

    A DNA-binding-site landscape and regulatory network analysis for NAC transcription factors in Arabidopsis thaliana.. / Lindemose, Søren; Jensen, Michael Krogh; de Velde, Jan Van; O'Shea, Charlotte; Heyndrickx, Ken S.; Workman, Christopher; Vandepoele, Klaas; Skriver, Karen; De Masi, Federico.

    In: Nucleic Acids Research, Vol. 42, No. 12, 2014, p. 7681-7693.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  8. Published

    Ageing of atrazine in manure amended soils assessed by bioavailability to Pseudomonas sp. strain ADP. / Glæsner, Nadia; Bælum, Jacob; Strobel, Bjarne W.; Jacobsen, Carsten S.

    In: Biodegradation, Vol. 25, No. 2, 2014, p. 217-225.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  9. Published

    A Generally Applicable Translational Strategy Identifies S100A4 as a Candidate Gene in Allergy. / Bruhn, Sören; Fang, Yu; Barrenäs, Fredrik; Gustafsson, Mika; Zhang, Huan; Konstantinell, Aelita; Krönke, Andrea; Sönnichsen, Birte; Bresnick, Anne; Dulyaninova, Natalya; Wang, Hui; Zhao, Yelin; Klingelhöfer, Jörg; Ambartsumian, Noona; Beck, Mette Kristina; Nestor, Colm; Bona, Elsa; Xiang, Zou; Benson, Mikael.

    In: Science Translational Medicine, Vol. 6, No. 218, 2014, p. 20218ra4-218ra4.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  10. Published

    A genome-wide association study identifies CDHR3 as a susceptibility locus for early childhood asthma with severe exacerbations.. / Bønnelykke, Klaus; Sleiman, Patrick; Nielsen, Kasper; Kreiner-Møller, Eskil; Mercader, Josep M; Belgrave, Danielle; den Dekker, Herman T; Husby, Anders; Sevelsted, Astrid; Faura-Tellez, Grissel; Mortensen, Li Juel; Paternoster, Lavinia; Flaaten, Richard; Mølgaard, Anne; Smart, David E; Thomsen, Philip Francis; Rasmussen, Morten; Bonàs-Guarch, Silvia; Holst, Claus; Nohr, Ellen A; Yadav, Rachita; March, Michael E; Blicher, Thomas Holberg; Lackie, Peter M; Jaddoe, Vincent W V; Simpson, Angela; Holloway, John W; Duijts, Liesbeth; Custovic, Adnan; Davies, Donna E; Torrents, David; Gupta, Ramneek; Hollegaard, Mads Vilhelm; Hougaard, David M; Hakonarson, Hakon; Bisgaard, Hans Flinker.

    In: Nature Genetics, Vol. 46, 2014, p. 51-55.

    Publication: Research - peer-reviewLetter – Annual report year: 2013

  11. Published
  12. Published

    An elevated pro-inflammatory cytokine profile in multiple chemical sensitivity. / Dantoft, Thomas Meinertz; Elberling, J.; Pedersen, Susanne Brix; Szecsi, P.B.; Vesterhauge, S.; Skovbjerg, S.

    In: Psychoneuroendocrinology, Vol. 40, 2014, p. 140-150.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  13. Published

    An integrated catalog of reference genes in the human gut microbiome. / Li, Junhua; Jia, Huijue; Cai, Xianghang; Zhong, Huanzi; Feng, Qiang; Sunagawa, Shinichi; Arumugam, Manimozhiyan; Kultima, Jens Roat; Prifti, Edi; Nielsen, Trine; Juncker, Agnieszka; Nielsen, Henrik Bjørn; Brunak, Søren.

    In: Nature Biotechnology, Vol. 32, No. 8, 2014, p. 834-841.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  14. Published

    An international effort towards developing standards for best practices in analysis, interpretation and reporting of clinical genome sequencing results in the CLARITY Challenge. / Brownstein, Catherine A ; Beggs, Alan H ; Homer, Nils ; Merriman, Barry ; Yu, Timothy W; Flannery, Katherine C ; DeChene, Elizabeth T ; Towne, Meghan C ; Savage, Sarah K ; Price, Emily N ; Dworzynski, Piotr.

    In: Genome Biology (Online Edition), Vol. 15, R53, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  15. Published

    Annotation of loci from genome-wide association studies using tissue-specific quantitative interaction proteomics. / Lundby, Alicia; Rossin, Elizabeth J.; Steffensen, Annette B.; Acha, Moshe Ray; Newton-Cheh, Christopher; Pfeufer, Arne; Lyneh, Stacey N.; Olesen, Søren-Peter; Brunak, Søren; Ellinor, Patrick T.; Jukema, J. Wouter; Trompet, Stella; Ford, Ian; Macfarlane, Peter W.; Krijthe, Bouwe P.; Hofman, Albert; Uitterlinden, Andre G.; Stricker, Bruno H.; Nathoe, Hendrik M.; Spiering, Wilko; Daly, Mark J.; Asselbergs, Folkert W.; van der Harst, Pim; Milan, David J.; de Bakker, Paul I. W.; Lage, Kasper; Olsen, Jesper V.

    In: Nature Methods, Vol. 11, No. 8, 2014, p. 868-874.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  16. Published
  17. Published

    Antibody informatics for drug discovery. / Shirai, Hiroki; Prades, Catherine; Vita, Randi; Marcatili, Paolo; Popovic, Bojana; Xu, Jianqing; Overington, John P.; Hirayama, Kazunori; Soga, Shinji; Tsunoyama, Kazuhisa; Clark, Dominic; Lefranc, Marie-Paule; Ikeda, Kazuyoshi.

    In: B B A - Proteins and Proteomics, Vol. 1844, No. 11, 2014, p. 2002-2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  18. Published

    Antibody structural modeling with prediction of immunoglobulin structure (PIGS).. / Marcatili, Paolo; Olimpieri, Pier Paolo; Chailyan, Anna; Tramontano, Anna.

    In: Nature Protocols, Vol. 9, No. 12, 2014, p. 2771-2783.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  19. Published
  20. Published
  21. Published

    A random set scoring model for prioritization of disease candidate genes using protein complexes and data-mining of GeneRIF, OMIM and PubMed records.. / Jiang, Li; Edwards, Stefan M.; Thomsen, Bo; Workman, Christopher; Guldbrandtsen, Bernt; Sørensen, Peter.

    In: BMC Bioinformatics, Vol. 15, No. 315, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  22. Published

    A Selective Sweep on a Deleterious Mutation in CPT1A in Arctic Populations. / Clemente, Florian J. ; Cardona, Alexia; Inchley, Charlotte E. ; Peter, Benjamin M. ; Jacobs, Guy; Pagani, Luca ; Lawson, Daniel J. ; Antão, Tiago ; Vicente, Mário ; Mitt, Mario ; Rasmussen, Simon.

    In: American Journal of Human Genetics, Vol. 95, No. 5, 2014, p. 584–589.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  23. Published
  24. Published

    Bacterial diversity in snow on North Pole ice floes. / Hauptmann, Aviaja Zenia Edna Lyberth; Stibal, Marek ; Bælum, Jacob; Sicheritz-Pontén, Thomas; Brunak, Søren; Bowman, Jeff S.; Hansen, Lars H. ; Jacobsen, Carsten S.; Blom, Nikolaj.

    In: Extremophiles, Vol. 18, 2014, p. 945-951.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  25. Published
  26. Published

    Biological insights from 108 schizophrenia-associated genetic loci. / Ripke, Stephan; Neale, Benjamin M.; Corvin, Aiden ; Walters, James T. R. ; Farh, Kai-How ; Holmans, Peter A. ; Lee, Phil ; Bulik-Sullivan, Brendan ; Collier, David A. ; Huang, Hailiang ; Pers, Tune Hannes; Agerbo, Esben ; Demontis, Ditte ; Hansen, Thomas; Hollegaard, Mads Vilhelm; Hougaard, David M.; Mors, Ole; Werge, Thomas.

    In: Nature, Vol. 511, 2014, p. 421-427.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  27. Published

    Cesarean section imprints cord blood immune cell distributions. / Thysen, Anna Hammerich; Larsen, Jeppe Madura; Rasmussen, Mette Annelie; Stokholm, J.; Bønnelykke, K.; Pedersen, Susanne Brix; Bisgaard, Hans Flinker.

    In: ALLERGY, Vol. 69, No. Supplement s99, 438, 2014, p. 192-192.

    Publication: Research - peer-reviewConference abstract in journal – Annual report year: 2014

  28. Published

    Characterisation of the Ara h 1-specific IgE repertoire in peanut allergic patients using phage display technology and next generation sequencing. / Christiansen, Anders; Bøgh, Katrine Lindholm; Kringelum, Jens Vindahl; Hansen, Christian Skjødt; Rigby, N. M.; Eiwegger, T.; Szepfalusi, Z.; Lund, Ole; Dufva, Martin.

    In: ALLERGY, Vol. 69, No. Supplement, 297, 2014, p. 140-140.

    Publication: Research - peer-reviewConference abstract in journal – Annual report year: 2014

  29. Published

    Characterization of binding specificities of bovine leucocyte class I molecules: impacts for rational epitope discovery.. / Hansen, Andreas M.; Rasmussen, Michael; Svitek, Nicholas; Harndahl, Mikkel; Golde, William T.; Barlow, John; Nene, Vishvanath; Buus, Søren; Nielsen, Morten.

    In: Immunogenetics, Vol. 66, No. 12, 2014, p. 705-718.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  30. Published

    Children developing asthma by school-age display aberrant immune responses to pathogenic airway bacteria as infants. / Larsen, Jeppe Madura; Pedersen, Susanne Brix; Thysen, Anna Hammerich; Birch, S.; Rasmussen, M.A.; Bisgaard, H.

    In: ALLERGY, Vol. 69, No. s99, 404, 2014, p. 179-179.

    Publication: Research - peer-reviewConference abstract in journal – Annual report year: 2014

  31. Published

    Children with asthma by school age display aberrant immune responses to pathogenic airway bacteria as infants. / Larsen, Jeppe Madura; Pedersen, Susanne Brix; Thysen, Anna Hammerich; Birch, Sune; Rasmussen, Morten Arendt; Bisgaard, Hans Flinker.

    In: Journal of Allergy and Clinical Immunology, Vol. 133, No. 4, 2014, p. 1008-1013.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  32. Published
  33. Published

    Cofactory: Sequence-based prediction of cofactor specificity of Rossmann folds. / Geertz-Hansen, Henrik Marcus; Blom, Nikolaj; Feist, Adam; Brunak, Søren; Petersen, Thomas Nordahl.

    In: Proteins, Vol. 82, No. 9, 2014, p. 1819-1828.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  34. Published
  35. Published

    Combining Experiments and Simulations Using the Maximum Entropy Principle. / Boomsma, Wouter; Ferkinghoff-Borg, Jesper; Lindorff-Larsen, Kresten.

    In: P L o S Computational Biology (Online), Vol. 10, No. 2, e1003406, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  36. Published

    Comparison of the Web Tools ARG-ANNOT and ResFinder for Detection of Resistance Genes in Bacteria. / Zankari, Ea.

    In: Antimicrobial Agents and Chemotherapy, Vol. 58, No. 8, 2014, p. 4986-4986.

    Publication: Research - peer-reviewLetter – Annual report year: 2014

  37. Published

    Compass: A hybrid method for clinical and biobank data mining. / Krysiak-Baltyn, Konrad; Petersen, Thomas Nordahl; Audouze, Karine Marie Laure; Jørgensen, Niels; Ängquist, L.; Brunak, Søren.

    In: Journal of Biomedical Informatics, Vol. 47, 2014, p. 160-170.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  38. Published

    Complete Genome Sequence of Border Disease Virus Genotype 3 Strain Gifhorn. / Fahnøe, Ulrik; Höper, Dirk ; Beer, Martin; Rasmussen, Thomas Bruun.

    In: Genome Announcements, Vol. 2, No. 1, e01142-13, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  39. Published

    Complete Genome Sequence of Classical Swine Fever Virus Genotype 2.2 Strain Bergen. / Fahnøe, Ulrik; Lohse, Louise; Becher, Paul ; Rasmussen, Thomas Bruun.

    In: Genome Announcements, Vol. 2, No. 3, 2014, p. e00483-14.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  40. Published

    CoreFlow: A computational platform for integration, analysis and modeling of complex biological data. / Pasculescu, Adrian; Schoof, Erwin; Creixell, Pau; Zheng, Yong; Olhovsky, Marina; Tian, Ruijun; So, Jonathan; Vanderlaan, Rachel D.; Pawson, Tony; Linding, Rune; Colwill, Karen.

    In: Journal of Proteomics, Vol. 100, 2014, p. 167-173.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  41. E-pub ahead of print

    Cyclebase 3.0: a multi-organism database on cell-cycle regulation and phenotypes. / Santos Delgado, Alberto; Wernersson, Rasmus; Jensen, Lars Juhl.

    In: Nucleic Acids Research, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  42. Published

    Database-driven primary analysis of raw sequencing data. / Gautier, Laurent (Inventor); Lund, Ole (Inventor).

    IPC No.: G06F19/22. Patent No.: WO2014060305. Apr 24, 2014.

    Publication: ResearchPatent – Annual report year: 2014

  43. Published

    Dataset size and composition impact the reliability of performance benchmarks for peptide-MHC binding predictions. / Kim, Yohan; Sidney, John; Buus, Søren; Sette, Alessandro; Nielsen, Morten; Peters, Bjoern.

    In: B M C Bioinformatics, Vol. 15, No. 1, 241, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  44. Published

    Derived immune and ancestral pigmentation alleles in a 7,000-year-old Mesolithic European. / Olalde, Inigo; Allentoft, Morten E.; Sanchez-Quinto, Federico; Santpere, Gabriel; Chiang, Charleston W. K.; DeGiorgio, Michael; Prado-Martinez, Javier; Rodriguez, Juan Antonio; Rasmussen, Simon; Quilez, Javier; Ramirez, Oscar; Marigorta, Urko M.; Fernandez-Callejo, Marcos; Prada, Maria Encina; Encinas, Julio Manuel Vidal; Nielsen, Rasmus; Netea, Mihai G.; Novembre, John; Sturm, Richard A.; Sabeti, Pardis; Marques-Bonet, Tomas; Navarro, Arcadi; Willerslev, Eske; Lalueza-Fox, Carles.

    In: NATURE, Vol. 507, No. 7491, 2014, p. 225-228.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  45. Published

    Detection of a caspase-3 cleaved tau fragment in the serum of alzheimer's patients by using immunoprecipitation and lc-ms/ms. / Inekci, Dilek; Hägglund, Per; Linemann, Thomas; Jacobsen, Susanne; Svensson, Birte; Vilholm, Ole; Henriksen, Kim.

    In: Alzheimer's & Dementia, Vol. 10, No. 4, 2014, p. P272-P273.

    Publication: Research - peer-reviewConference abstract in journal – Annual report year: 2014

  46. Published

    Development of synchronous VHL syndrome tumors reveals contingencies and constraints to tumor evolution. / Fisher, Rosalie; Horswell, Stuart; Rowan, Andrew; Salm, Maximilian P.; de Bruin, Elza C.; Gulati, Sakshi; McGranahan, Nicholas; Stares, Mark; Gerlinger, Marco; Varela, Ignacio; Crockford, Andrew; Favero, Francesco; Quidville, Virginie; André, Fabrice; Navas, Carolina; Grönroos, Eva; Nicol, David; Hazell, Steve; Hrouda, David; O’Brien, Tim; Matthews, Nik; Phillimore, Ben; Begum, Sharmin; Rabinowitz, Adam; Biggs, Jennifer; Bates, Paul A.; McDonald, Neil Q.; Stamp, Gordon; Spencer-Dene, Bradley; Hsieh, James J.; Xu, Jianing; Pickering, Lisa; Gore, Martin; Larkin, James; Swanton, Charles.

    In: Genome Biology (Online Edition), Vol. 15, No. 8, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  47. Published

    Discovery of biomarkers for glycaemic deterioration before and after the onset of type 2 diabetes: rationale and design of the epidemiological studies within the IMI DIRECT Consortium. / Koivula, Robert W.; Heggie, Alison; Barnett, Anna; Cederberg, Henna; Hansen, Tue Haldor; Koopman, Anitra D.; Ridderstrale, Martin; Rutters, Femke; Vestergaard, Henrik; Gupta, Ramneek; Herrgard, Sanna; Heymans, Martijn W.; Perry, Mandy H.; Rauh, Simone; Siloaho, Maritta; Teare, Harriet J. A.; Thorand, Barbara; Bell, Jimmy; Brunak, Søren; Frost, Gary; Jablonka, Bernd; Mari, Andrea; McDonald, Tim J.; Dekker, Jacqueline M.; Hansen, Torben; Hattersley, Andrew; Laakso, Markku; Pedersen, Oluf; Koivisto, Veikko; Ruetten, Hartmut; Walker, Mark; Pearson, Ewan; Franks, Paul W.

    In: DIABETOLOGIA, Vol. 57, No. 6, 2014, p. 1132-1142.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  48. Published

    Discrepancies in listed adverse drug reactions in pharmaceutical product information supplied by the regulatory authorities in Denmark and the USA. / Eriksson, Robert; Aagaard, Lise; Jensen, Lars Juhl; Borisova, Liza; Hørlück, Dorte; Brunak, Søren; Hansen, Ebba Holme.

    In: Pharmacology Research & Perspectives, Vol. 2, No. 3, e00038, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  49. Published

    DNA secondary structures are associated with recombination in major Plasmodium falciparum variable surface antigen gene families. / Sander, Adam F.; Lavstsen, Thomas; Rask, Thomas Salhøj; Lisby, Michael; Salanti, Ali; Fordyce, Sarah L.; Jespersen, Jakob S.; Carter, Richard; Deitsch, Kirk W.; Theander, Thor G.; Pedersen, Anders Gorm; Arnot, David E.

    In: Nucleic Acids Research, Vol. 42, No. 4, 2014, p. 202270-2281.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  50. Published

    Dose-Specific Adverse Drug Reaction Identification in Electronic Patient Records: Temporal Data Mining in an Inpatient Psychiatric Population. / Eriksson, Robert; Werge, Thomas; Jensen, Lars Juhl; Brunak, Søren.

    In: Drug Safety, Vol. 37, No. 4, 2014, p. 237-247.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  51. Published

    Early immune response patterns to pathogenic bacteria are associated to increased risk of lower respiratory infections in children. / Vissing, N. H.; Larsen, Jeppe Madura; Rasmussen, Mette Annelie; Thysen, Anna Hammerich; Chawes, B. L.; Bønnelykke, K.; Pedersen, Susanne Brix; Bisgaard, Hans Flinker.

    In: ALLERGY, Vol. 69, No. Supplement s99, 84, 2014, p. 37-37.

    Publication: Research - peer-reviewConference abstract in journal – Annual report year: 2014

  52. Published

    Effect of subinhibitory concentrations of four commonly used biocides on the conjugative transfer of Tn916 in Bacillus subtilis. / Seier-Petersen, Maria Amalie; Jasni, A.; Aarestrup, Frank Møller; Vigre, Håkan; Mullany, P.; Roberts, A. P.; Agersø, Yvonne.

    In: Journal of Antimicrobial Chemotherapy, Vol. 69, No. 2, 2014, p. 343-348.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  53. Published

    Effects of pregnancy on obesity-induced inflammation in a mouse model of fetal programming. / Ingvorsen, Camilla; Thysen, Anna Hammerich; Fernandez-Twinn, D.; Nordby, Pernille; Nielsen, Kristian Fog; Ozanne, S. E.; Pedersen, Susanne Brix; Hellgren, Lars.

    In: International Journal of Obesity, Vol. 38, No. 10, 2014, p. 1282-1289.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  54. Published

    Effects on metabolic markers are modified by PPARG2 and COX2 polymorphisms in infants randomized to fish oil.. / Harsløf, Laurine B. S.; Damsgaard, Camilla T.; Hellgren, Lars I.; Andersen, Anders Daniel; Vogel, Ulla; Lauritzen, Lotte.

    In: Genes & Nutrition, Vol. 9, No. 3, 396, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  55. Published

    Enhancing Reproducibility in Cancer Drug Screening: How Do We Move Forward?. / Shi, Leming; Haibe-Kains, Benjamin; Birkbak, Nicolai Juul; Bedard, Philippe L.; Hatzis, Christos; Stern, David F.; Clarke, Robert; Quackenbush, John; Beck, Andrew H.; Aerts, Hugo J. W. L.

    In: Cancer Research, Vol. 74, No. 15, 2014, p. 4016-4023.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  56. Published

    Equilibrium simulations of proteins using molecular fragment replacement and NMR chemical shifts. / Boomsma, Wouter; Tian, Pengfei; Frellsen, J.; Ferkinghoff-Borg, Jesper; Hamelryck, T.; Lindorff-Larsen, K.; Vendruscolo, M.

    In: Proceedings of the National Academy of Sciences, Vol. 111, No. 38, 2014, p. 13852-13857.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  57. Published

    Erratum to: Dose-Specific Adverse Drug Reaction Identification in Electronic Patient Records: Temporal Data Mining in an Inpatient Psychiatric Population. / Eriksson, Robert; Werge, Thomas; Jensen, Lars Juhl; Brunak, Søren.

    In: Drug Safety, Vol. 37, 2014, p. 379.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  58. Published

    Evaluation of whole genome sequencing for outbreak detection of Salmonella enterica. / Leekitcharoenphon, Pimlapas; Nielsen, Eva M.; Kaas, Rolf Sommer; Lund, Ole; Aarestrup, Frank Møller.

    In: P L o S One, Vol. 9, No. 2, e87991, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  59. Published
  60. Published

    Expanding user’s query with tag-neighbors for effective medical information retrieval. / Durao, Frederico; Bayyapu, Karunakar Reddy; Xu, Guandong; Dolog, Peter; Lage, Ricardo.

    In: Multimedia Tools and Applications, Vol. 71, No. 2, 2014, p. 905-929.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  61. Published

    Experimental and computational tools for analysis of signaling networks in primary cells. / Schoof, Erwin M; Linding, Rune.

    In: Current Protocols in Immunology, Vol. 104, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  62. Published

    Exploring mechanisms of diet-colon cancer associations through candidate molecular interaction networks. / Westergaard, David; Li, Jun; Jensen, Kasper; Kouskoumvekaki, Irene; Panagiotou, Gianni.

    In: B M C Genomics, Vol. 15, No. 1, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  63. Published

    Expression of regulators of mitotic fidelity are associated with intercellular heterogeneity and chromosomal instability in primary breast cancer.. / Roylance, Rebecca; Endesfelder, David; Jamal-Hanjani, Mariam; Burrell, Rebecca A.; Gorman, Patricia; Sander, Jil; Murphy, Niamh; Birkbak, Nicolai Juul; Hanby, Andrew M.; Speirs, Valerie; Johnston, Stephen R. D.; Kschischo, Maik; Swanton, Charles.

    In: Breast Cancer Research and Treatment, Vol. 148, No. 1, 2014, p. 221-229.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  64. Published

    Facilitating the use of large-scale biological data and tools in the era of translational bioinformatics. / Kouskoumvekaki, Irene; Shublaq, Nour ; Brunak, Søren.

    In: Briefings in Bioinformatics, Vol. 15, No. 6, 2014, p. 942-952.

    Publication: Research - peer-reviewJournal article – Annual report year: 2013

  65. Published

    Genetic association study of QT interval highlights role for calcium signaling pathways in myocardial repolarization. / Arking, Dan E; Pulit, Sara L; Crotti, Lia; van der Harst, Pim; Munroe, Patricia B; Koopmann, Tamara T; Sotoodehnia, Nona; Rossin, Elizabeth J; Morley, Michael; Wang, Xinchen; Johnson, Andrew D; Lundby, Alicia; Gudbjartsson, Daniel F.; Noseworthy, Peter A; Eijgelsheim, Mark; Bradford, Yuki; Tarasov, Kirill V; Dörr, Marcus; Müller-Nurasyid, Martina; Lahtinen, Annukka M; Nolte, Ilja M; Smith, Albert Vernon; Bis, Joshua C; Isaacs, Aaron; Newhouse, Stephen J; Evans, Daniel S; Post, Wendy S; Waggott, Daryl; Lyytikäinen, Leo-Pekka; Hicks, Andrew A; Eisele, Lewin; Ellinghaus, David; Hayward, Caroline; Navarro, Pau; Ulivi, Sheila; Tanaka, Toshiko; Tester, David J; Chatel, Stephanie; Gustafsson, Stefan; Kumari, Meena; Morris, Richard W; Naluai, Asa T; Padmanabhan, Sandosh; Kluttig, Alexander; Strohmer, Bernhard; Panayiotou, Andrie G; Torres, Maria; Knoflach, Michael; Hubacek, Jaroslav A; Slowikowski, Kamil; Raychaudhuri, Soumya; Kumar, Runjun D; Harris, Tamara B; Launer, Lenore J; Shuldiner, Alan R; Alonso, Alvaro; Bader, Joel S; Ehret, Georg; Huang, Hailiang; Kao, W H Linda; Strait, James B; Macfarlane, Peter W; Brown, Morris; Caulfield, Mark J; Samani, Nilesh J; Kronenberg, Florian; Willeit, Johann; Smith, J Gustav; Greiser, Karin H; Meyer Zu Schwabedissen, Henriette; Werdan, Karl; Carella, Massimo; Zelante, Leopoldo; Heckbert, Susan R; Psaty, Bruce M; Rotter, Jerome I; Kolcic, Ivana; Polasek, Ozren; Wright, Alan F; Griffin, Maura; Daly, Mark J; Arnar, David O; H��lm, Hilma; Thorsteinsdottir, Unnur; Denny, Joshua C; Roden, Dan M; Zuvich, Rebecca L; Emilsson, Valur; Plump, Andrew S; Larson, Martin G; O'Donnell, Christopher J; Yin, Xiaoyan; Bobbo, Marco; D'Adamo, Adamo P; Iorio, Annamaria; Sinagra, Gianfranco; Carracedo, Angel; Cummings, Steven R; Nalls, Michael A; Jula, Antti; Kontula, Kimmo K; Marjamaa, Annukka; Oikarinen, Lasse; Perola, Markus; Porthan, Kimmo; Erbel, Raimund; Hoffmann, Per; Jöckel, Karl-Heinz; Kälsch, Hagen; Nöthen, Markus M; den Hoed, Marcel; Loos, Ruth J F; Thelle, Dag S; Gieger, Christian; Meitinger, Thomas; Perz, Siegfried; Peters, Annette; Prucha, Hanna; Sinner, Moritz F; Waldenberger, Melanie; de Boer, Rudolf A; Franke, Lude; van der Vleuten, Pieter A; Beckmann, Britt Maria; Martens, Eimo; Bardai, Abdennasser; Hofman, Nynke; Wilde, Arthur A M; Behr, Elijah R; Dalageorgou, Chrysoula; Giudicessi, John R; Medeiros-Domingo, Argelia; Barc, Julien; Kyndt, Florence; Probst, Vincent; Ghidoni, Alice; Insolia, Roberto; Hamilton, Robert M; Scherer, Stephen W; Brandimarto, Jeffrey; Margulies, Kenneth; Moravec, Christine E; Fabiola, no-firstname; Fuchsberger, Christian; O'Connell, Jeffrey R; Lee, Wai K; Watt, Graham C M; Campbell, Harry; Wild, Sarah H; El Mokhtari, Nour E; Frey, Norbert; Asselbergs, Folkert W; Leach, Irene Mateo; Navis, Gerjan; van den Berg, Maarten P; van Veldhuisen, Dirk J; Kellis, Manolis; Krijthe, Bouwe P; Franco, Oscar H; Hofman, Albert; Kors, Jan A; Uitterlinden, Andre G.; Witteman, Jacqueline C M; Kedenko, Lyudmyla; Lamina, Claudia; Oostra, Ben A; Abecasis, Goncalo R; Lakatta, Edward G; Mulas, Antonella; Orrú, Marco; Schlessinger, David; Uda, Manuela; Markus, Marcello R P; Völker, Uwe; Snieder, Harold; Spector, Timothy D; Arnlöv, Johan; Lind, Lars; Sundström, Johan; Syvänen, Ann-Christine; Kivimaki, Mika; Kähönen, Mika; Mononen, Nina; Raitakari, Olli T; Viikari, Jorma S; Adamkova, Vera; Kiechl, Stefan; Brion, Maria; Nicolaides, Andrew N; Paulweber, Bernhard; Haerting, Johannes; Dominiczak, Anna F; Nyberg, Fredrik; Whincup, Peter H; Hingorani, Aroon D; Schott, Jean-Jacques; Bezzina, Connie R; Ingelsson, Erik; Ferrucci, Luigi; Gasparini, Paolo; Wilson, James F; Rudan, Igor; Franke, Andre; Mühleisen, Thomas W; Pramstaller, Peter P; Lehtimäki, Terho J; Paterson, Andrew D; Parsa, Afshin; Liu, Yongmei; van Duijn, Cornelia M; Siscovick, David S; Gudnason, Vilmundur; Jamshidi, Yalda; Salomaa, Veikko; Felix, Stephan B; Sanna, Serena; Ritchie, Marylyn D; Stricker, Bruno H; Stefansson, Kari; Boyer, Laurie A; Cappola, Thomas P; Olsen, Jesper V; Hansen, Kasper Lage; Schwartz, Peter J; Kääb, Stefan; Chakravarti, Aravinda; Ackerman, Michael J; Pfeufer, Arne; de Bakker, Paul I W; Newton-Cheh, Christopher; no-lastname, no-firstname.

    In: Nature Genetics, Vol. 46, No. 8, 2014, p. 826-836.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  66. Published

    Genome-wide Ancestry Patterns in Rapanui Suggest Pre-European Admixture with Native Americans. / Moreno-Mayar, J. Víctor; Rasmussen, Simon; Seguin-Orlando, Andaine; Rasmussen, Morten; Liang, Mason; Flåm, Siri Tennebø; Lie, Benedicte Alexandra; Gilfillan, Gregor Duncan; Nielsen, Rasmus; Thorsby, Erik; Willerslev, Eske; Malaspinas, Anna-Sapfo.

    In: Current Biology, Vol. 24, No. 21, 2014, p. 2518-2525.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  67. Published

    Genome-wide association analyses identify variants in developmental genes associated with hypospadias. / Geller, Frank; Feenstra, Bjarke; Carstensen, Lisbeth; Pers, Tune H.; van Rooij, Iris A. L. M.; Korberg, Izabella Baranowska; Choudhry, Shweta; Karjalainen, Juha M.; Schnack, Tine H.; Hollegaard, Mads V.; Feitz, Wout F. J.; Roeleveld, Nel; Hougaard, David M.; Hirschhorn, Joel N.; Franke, Lude; Baskin, Laurence S.; Nordenskjold, Agneta; van der Zanden, Loes F. M.; Melbye, Mads.

    In: Nature Genetics, Vol. 46, No. 9, 2014, p. 957-967.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  68. Published
  69. E-pub ahead of print

    Genomic profiling of thousands of candidate polymorphisms predicts risk of relapse in 778 Danish and German childhood acute lymphoblastic leukemia patients. / Wesolowska, Agata; Borst, L.; Dalgaard, Marlene Danner; Yadav, Rachita; Rasmussen, K. K. ; Wehner, Peder Skov; Rasmussen, M.; Ørntoft, T.F.; Nordentoft, I.; Koehler, R.; Sicheritz-Pontén, Thomas; Gautier, Laurent; Brunak, Søren; Gupta, Ramneek.

    In: Leukemia, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  70. Published

    Gliadin affects glucose homeostasis and intestinal metagenome in C57BL/6 mice fed and high-fat diet. / Zhang, Li; Hansen, Axel Kornerup; Bahl, Martin Iain; Hansen, Camilla Hartmann Friis; Andersen, Daniel; Pedersen, Susanne Brix; Hellgren, Lars; Licht, Tine Rask.

    2014. Abstract from The Danish Microbiological Society Annual Congress 2014, Copenhagen, Denmark.

    Publication: Research - peer-reviewConference abstract for conference – Annual report year: 2014

  71. Published

    Hearing loss in relation to sound exposure of professional symphony orchestra musicians. / Schmidt, J. H. ; Pedersen, E. R.; Paarup, H. M.; Christensen-Dalsgaard, Jakob; Andersen, T; Poulsen, T.; Bælum, Jacob.

    In: Ear and Hearing, Vol. 35, No. 4, 2014, p. 448-460.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  72. Published

    High-Resolution Melt Analysis for Rapid Comparison of Bacterial Community Compositions. / Hjelmsø, Mathis Hjort; Hansen, Lars Hestbjerg; Bælum, Jacob; Feld, Louise; Holben, William E.; Jacobsen, Carsten Suhr.

    In: Applied and Environmental Microbiology, Vol. 80, No. 12, 2014, p. 3568-3575.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  73. Published

    Host genome variations and risk of infections during induction treatment for childhood acute lymphoblastic leukaemia. / Lund, Bendik; Wesolowska-Andersen, Agata; Lausen, Birgitte; Borst, Louise; Rasmussen, Kirsten Kørup; Müller, Klaus; Klungland, Helge; Gupta, Ramneek; Schmiegelow, Kjeld.

    In: European Journal of Haematology, Vol. 92, No. 4, 2014, p. 321-330.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  74. Published

    Hybridization Capture Using Short PCR Products Enriches Small Genomes by Capturing Flanking Sequences (CapFlank). / Tsangaras, Kyriakos; Wales, Nathan; Sicheritz-Pontén, Thomas; Rasmussen, Simon; Michaux, Johan; Ishida, Yasuko; Morand, Serge; Kampmann, Marie-Louise; Gilbert, M. Thomas P.; Greenwood, Alex D.

    In: PLOS ONE, Vol. 9, No. 10, e109101, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  75. Published

    Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes. / Nielsen, Henrik Bjørn; Almeida, Mathieu; Juncker, Agnieszka; Rasmussen, Simon; Li, Junhua; Sunagawa, Shinichi; Plichta, Damian Rafal; Gautier, Laurent; Pedersen, Anders Gorm; Emmanuelle, Le Chatelier; Pelletier, Eric; Bonde, Ida; Nielsen, Trine; Manichanh, Chaysavanh; Arumugam, Manimozhiyan; Batto, Jean-Michel; dos Santos, Marcelo Bertalan Quintanilha; Blom, Nikolaj; Borruel, Natalia; Burgdorf, Kristoffer S.; Boumezbeur, Fouad; Casellas, Francesc; Doré, Joël; Dworzynski, Piotr; Guarner, Francisco; Hansen, Torben; Hildebrand, Falk; Kaas, Rolf Sommer; Kennedy, Sean; Kristiansen, Karsten; Kultima, Jens Roat; Léonard, Pierre; Levenez, Florence; Lund, Ole; Moumen, Bouziane; Denis, Le Paslier; Pons, Nicolas; Pedersen, Oluf; Prifti, Edi; Qin, Junjie; Raes, Jeroen; Sørensen, Søren; Tap, Julien; Tims, Sebastian; Ussery, David; Yamada, Takuji; Renault, Pierre; Sicheritz-Pontén, Thomas; Bork, Peer; Wang, Jun; Brunak, Søren; Ehrlich, S. Dusko.

    In: Nature Biotechnology, Vol. 32, No. 8, 2014, p. 822-828.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  76. Published

    Identification and HLA-Tetramer-Validation of Human CD4(+) and CD8(+) T Cell Responses against HCMV Proteins IE1 and IE2. / Braendstrup, Peter; Mortensen, Bo Kok; Justesen, Sune Frederik Lamdahl; Osterby, Thomas; Rasmussen, Michael; Hansen, Andreas Martin; Christiansen, Claus Bohn; Hansen, Morten Bagge; Nielsen, Morten; Vindelov, Lars; Buus, Søren; Stryhn, Anette.

    In: PLOS ONE, Vol. 9, No. 4, e94892, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  77. Published

    Identification of Hypoxia-Regulated Proteins Using MALDI-Mass Spectrometry Imaging Combined with Quantitative Proteomics. / Djidja, Marie-Claude; Chang, Joan; Hadjiprocopis, Andreas; Schmich, Fabian; Sinclair, John; Mršnik, Martina; Schoof, Erwin M.; Barker, Holly E.; Linding, Rune; Jørgensen, Claus; Erler, Janine T.

    In: Journal of Proteome Research, Vol. 13, 2014, p. 2297-2313.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  78. Published

    Identification of Odorant-Receptor Interactions by Global Mapping of the Human Odorome. / Audouze, Karine Marie Laure; Tromelin, Anne; Le Bon, Anne Marie; Belloir, Christine; Petersen, Rasmus Koefoed; Kristiansen, Karsten; Brunak, Søren; Taboureau, Olivier .

    In: PLOS ONE, Vol. 9, No. 4, e93037, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  79. Published

    Immunoinformatics of Placental Malaria Vaccine Development. / Jessen, Leon Eyrich; Lund, Ole (Main supervisor); Hviid, Lars (Supervisor); Nielsen, Morten (Supervisor).

    Technical University of Denmark, 2014. 239 p.

    Publication: ResearchPh.D. thesis – Annual report year: 2014

  80. Published

    Improved pan-specific MHC class I peptide-binding predictions using a novel representation of the MHC-binding cleft environment. / Carrasco Pro, S.; Zimic, M.; Nielsen, Morten.

    In: Tissue Antigens, Vol. 83, No. 2, 2014, p. 94-100.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  81. Published

    Improving biotech education through gamified laboratory simulations. / Bonde, Mads; Makransky, Guido; Wandall, Jakob; Larsen, Mette Voldby; Morsing, Mikkel; Jarmer, Hanne Østergaard; Sommer, Morten.

    In: Nature Biotechnology, Vol. 32, No. 7, 2014, p. 694-697.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  82. Published

    Improving the accuracy of the structure prediction of the third hypervariable loop of the heavy chains of antibodies. / Messih, M. A.; Lepore, R.; Marcatili, Paolo; Tramontano, A.

    In: Bioinformatics, Vol. 30, No. 19, 2014, p. 2733-2740.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  83. E-pub ahead of print

    In Silico Detection and Typing of Plasmids using PlasmidFinder and Plasmid Multilocus Sequence Typing. / Carattoli, Alessandra; Zankari, Ea; García-Fernández, Aurora; Larsen, Mette Voldby; Lund, Ole; Villa, Laura; Aarestrup, Frank Møller; Hasman, Henrik.

    In: Antimicrobial Agents and Chemotherapy, Vol. 58, No. 7, 2014, p. 3895-3903.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  84. Published

    In silico prediction of Gallibacterium anatis pan-immunogens. / Bager, Ragnhild J.; Kudirkiene, Egle; da Piedade, Isabelle; Seemann, Torsten; Nielsen, Tine K.; Pors, Susanne E.; Mattsson, Andreas Holm; Boyce, John D.; Adler, Ben; Bojesen, Anders M.

    In: Veterinary Research, Vol. 45, No. 1, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  85. Published

    Interaction of Lactobacillus acidophilus NCFM grown on different carbohydrates with human intestinal epithelial cells: Adhesion Properties and roles of S-layer Proteins. / Celebioglu, Hasan Ufuk; Lahtinen, Sampo J; Pedersen, Susanne Brix; Abou Hachem, Maher ; Svensson, Birte.

    2014. Abstract from 11th international Symposium on Lactic Acid Bacteria, Egmond aan Zee, Netherlands.

    Publication: Research - peer-reviewConference abstract for conference – Annual report year: 2014

  86. Published

    Intercorrelations of lipoprotein subfractions and their covariation with lifestyle factors in healthy men. / Parlesak, Alexandr; Eckoldt, Joachim; Winkler, Karl; Bode, Johann Christian.

    In: Journal of Clinical Biochemistry and Nutrition, Vol. 54, No. 3, 2014, p. 174-180.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  87. Published
  88. Published

    KinomeXplorer: an integrated platform for kinome biology studies. / Horn, Heiko; Schoof, Erwin; Kim, Jinho; Robin, Xavier; Miller, Martin Lee; Diella, Francesca; Palma, Anita; Cesareni, Gianni; Jensen, Lars Juhl; Linding, Rune.

    In: Nature Methods, Vol. 11, No. 6, 2014, p. 603-604.

    Publication: Research - peer-reviewLetter – Annual report year: 2014

  89. Published

    Large-scale analysis of B-cell epitopes on influenza virus hemagglutinin - implications for cross-reactivity of neutralizing antibodies.. / Sun, Jing; Kudahl, Ulrich J.; Simon, Christian; Cao, Zhiwei; Reinherz, Ellis L.; Brusic, Vladimir.

    In: Frontiers in Immunology, Vol. 5, 38, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  90. Published

    Library sequencing strategies for comparative analysis of stress resistance mechanisms in Escherichia coli strains. / Lennen, Rebecca; Bonde, Ida; Koza, Anna; Herrgard, Markus.

    In: New Biotechnology, Vol. 31, 2014, p. S86.

    Publication: Research - peer-reviewConference abstract in journal – Annual report year: 2014

  91. Published

    Lineage-specific interface proteins match up the cell cycle and differentiation in embryo stem cells.. / Re, Angela; Workman, Christopher T.; Waldron, Levi; Quattrone, Alessandro; Brunak, Søren.

    In: Stem Cell Research, Vol. 13, No. 2, 2014, p. 316-328.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  92. Published

    LocTree3 prediction of localization. / Goldberg, T.; Hecht, M.; Hamp, T.; Karl, T.; Yachdav, G.; Ahmed, Nadeed; Altermann, U.; Angerer, P.; Ansorge, S.; Balasz, K.; Bernhofer, M.; Betz, A.; Cizmadija, L.; Do, K. T.; Gerke, J.; Greil, R.; Joerdens, V.; Hastreiter, M.; Hembach, K.; Herzog, M.; Kalemanov, M.; Kluge, M.; Meier, A.; Nasir, H.; Neumaier, U.; Prade, V.; Reeb, J.; Sorokoumov, A.; Troshani, I.; Vorberg, S.; Waldraff, S.; Zierer, J.; Nielsen, Henrik; Rost, B.

    In: Nucleic Acids Research, Vol. 42, No. W1, 2014, p. W350-W355.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  93. Published

    Lysine deacetylase inhibition prevents diabetes by chromatin-independent immunoregulation and β-cell protection.. / Christensen, Dan Ploug; Gysemans, Conny; Lundh, Morten; Dahllöf, Mattias Salling; Noesgaard, Daniel; Schmidt, Søren Fisker; Mandrup, Susanne; Birkbak, Nicolai Juul; Workman, Christopher; Piemonti, Lorenzo; Blaabjerg, Lykke; Monzani, Valmen; Fossati, Gianluca; Mascagni, Paolo; Paraskevas, Steven; Aikin, Reid A; Billestrup, Nils; Grunnet, Lars Groth; Dinarello, Charles A; Mathieu, Chantal; Mandrup-Poulsen, Thomas.

    In: Proceedings of the National Academy of Sciences of the United States of America, Vol. 111, No. 3, 2014, p. 1055-1059.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  94. Published

    Metagenomics reveals sediment microbial community response to Deepwater Horizon oil spill. / Mason, Olivia U.; Scott, Nicole M.; Gonzalez, Antonio; Robbins-Pianka, Adam; Bælum, Jacob; Kimbrel, Jeffrey; Bouskill, Nicholas J.; Prestat, Emmanuel; Borglin, Sharon; Joyner, Dominique C.; Fortney, Julian L.; Jurelevicius, Diogo; Stringfellow, William T.; Alvarez-Cohen, Lisa; Hazen, Terry C.; Knight, Rob; Gilbert, Jack A.; Jansson, Janet K.

    In: I S M E Journal, Vol. 8, No. 7, 2014, p. 1464-1475.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  95. Published

    Metagenomic Systems Biology of the Human Microbiome. / Bonde, Ida; Nielsen, Henrik Bjørn (Supervisor); Sicheritz-Pontén, Thomas (Main supervisor).

    Technical University of Denmark, 2014. 153 p.

    Publication: ResearchPh.D. thesis – Annual report year: 2014

  96. Published

    Modulation of the Chromatin Phosphoproteome by the Haspin Protein Kinase. / Schoof, Erwin M.; Linding, Rune; de Medina-Redondo, Maria; Toprak, Umut H.; Meraldi, Patrick; Herzog, Franz; Maiolica, Alessio; Novy, Karel; Hauri, Simon; Gatti, Marco; Penengo, Lorenza; Villa, Fabrizio; Chaikuad, Apirat; Knapp, Stefan; Lou, Hua Jane; Turk, Benjamin E.; Jeganathan, Siva; Aebersold, Ruedi.

    In: Molecular and Cellular Proteomics, Vol. 13, No. 7, 2014, p. 1724-1740.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  97. Published

    Modules, networks and systems medicine for understanding disease and aiding diagnosis. / Gustafsson, Mika; Nestor, Colm E.; Zhang, Huan; Barabasi, Albert-Laszlo; Baranzini, Sergio; Brunak, Søren; Chung, Kian Fan; Federoff, Howard J.; Gavin, Anne-Claude; Meehan, Richard R.; Picotti, Paola; Pujana, Miguel Angel; Rajewsky, Nikolaus; Smith, Kenneth G. C.; Sterk, Peter J.; Villoslada, Pablo; Benson, Mikael.

    In: Genome Medicine, Vol. 6, No. 10, 2014.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  98. Published

    MR1-restricted MAIT cells display ligand discrimination and pathogen selectivity through distinct T cell receptor usage.. / Gold, Marielle C.; McLaren, James E.; Reistetter, Joseph A.; Smyk-Pearson, Sue; Ladell, Kristin; Swarbrick, Gwendolyn M.; Yu, Yik Y. L.; Hansen, Ted H.; Lund, Ole; Nielsen, Morten; Gerritsen, Bram; Kesmir, Can; Miles, John J.; Lewinsohn, Deborah A.; Price, David A.; Lewinsohn, David M.

    In: Journal of Experimental Medicine, Vol. 211, No. 8, 2014, p. 1601-1610.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  99. Published

    Multiparametric Bioinformatics Distinguish the CD4/CD8 Ratio as a Suitable Laboratory Predictor of Combined T Cell Pathogenesis in HIV Infection. / Buggert, Marcus; Frederiksen, Juliet Wairimu; Noyan, Kajsa; Svärd, Jenny; Barqasho, Babilonia; Sönnerborg, Anders; Lund, Ole; Nowak, Piotr; Karlsson, Annika C.

    In: Journal of Immunology, Vol. 192, No. 5, 2014, p. 2099-2108.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  100. Published
  101. Published

    Natural mannosylation of HIV-1 gp120 imposes no immunoregulatory effects in primary human plasmacytoid dendritic cells. / Søndergaard, Jonas Nørskov; Vinner, Lasse; Pedersen, Susanne Brix.

    In: Molecular Immunology, Vol. 59, No. 2, 2014, p. 180-187.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  102. Published

    NetFCM: A Semi-Automated Web-Based Method for Flow Cytometry Data Analysis. / Frederiksen, Juliet Wairimu; Buggert, Marcus; Karlsson, Annika C.; Lund, Ole.

    In: Cytometry. Part A, Vol. 85, No. 11, 2014, p. 969-977.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

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