Center for Biological Sequence Analysis

  1. 2015
  2. Published

    Convolutional LSTM Networks for Subcellular Localization of Proteins. / Sønderby, Søren Kaae; Sønderby, Casper Kaae; Nielsen, Henrik; Winther, Ole.

    Algorithms for Computational Biology: Second International Conference, AlCoB 2015, Mexico City, Mexico, August 4-5, 2015, Proceedings. ed. / Adrian-Horia Dediu; Francisco Hernández-Quiroz; Carlos Martín-Vide; David A. Rosenblueth. Vol. 9199 Springer, 2015. p. 68-80 (Lecture Notes in Computer Science).

    Publication: Research - peer-reviewArticle in proceedings – Annual report year: 2015

  3. Published

    Convolutional LSTM Networks for Subcellular Localization of Proteins. / Nielsen, Henrik; Sønderby, Søren Kaae; Sønderby, Casper Kaae; Winther, Ole.

    2015. Abstract from First Annual Danish Bioinformatics Conference, Odense, Denmark.

    Publication: Research - peer-reviewConference abstract for conference – Annual report year: 2015

  4. Published

    Creation of Functional Viruses from Non-Functional cDNA Clones Obtained from an RNA Virus Population by the Use of Ancestral Reconstruction. / Fahnøe, Ulrik; Pedersen, Anders Gorm; Dräger, Carolin; Orton, Richard J; Blome, Sandra; Höper, Dirk; Beer, Martin; Rasmussen, Thomas Bruun.

    In: P L o S One, Vol. 10, No. 10, e0140912, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  5. Published

    Cyclebase 3.0: a multi-organism database on cell-cycle regulation and phenotypes. / Santos Delgado, Alberto; Wernersson, Rasmus; Jensen, Lars Juhl.

    In: Nucleic Acids Research, Vol. 43, No. D1, gku1092, 2015, p. D1140-D1144.

    Publication: Research - peer-reviewJournal article – Annual report year: 2014

  6. Published

    Danger in the reef : proteome, toxicity, and neutralization of the venom of the olive sea snake, Aipysurus laevis. / Laustens, Andreas H.; Gutiérrez, José Maria; Redsted Rasmussen, Arne; Engmark, Mikael; Gravlund, Peter; Sanders, Kate L.; Lohse, Brian; Lomonte, Bruno.

    In: Toxicon, Vol. 107, No. Part B, 2015, p. 187-196.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  7. Published

    Defining the microbial effluxome in the content of the host-microbiome interaction. / Ioannidis, Anastasios; Magana, Maria; Bologa, Cristian G.; Oprea, Tudor I.; Paulsen, Ian T.; Tegos, George P.

    In: Frontiers in Pharmacology, Vol. 6, 31, 2015.

    Publication: Research - peer-reviewComment/debate – Annual report year: 2015

  8. Published

    Determination of specificity influencing residues for key transcription factor families. / Patel, Ronak Y.; Garde, Christian; Stormo, Gary D.

    In: Quantitative Biology, Vol. 3, No. 3, 2015, p. 115-123.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  9. Published

    Developing a Molecular Roadmap of Drug-Food Interactions. / Jensen, Kasper; Ni, Yueqiong; Panagiotou, Gianni; Kouskoumvekaki, Irene.

    In: P L o S Computational Biology (Online), Vol. 11, No. 2, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  10. Published

    Discovery, genotyping and characterization of structural variation and novel sequence at single nucleotide resolution from de novo genome assemblies on a population scale. / Liu, Siyang; Huang, Shujia; Rao, Junhua; Ye, Weijian; Schierup, Mikkel H.; Villesen, Palle ; Xu, Xun; Li, Ning; Kristiansen, Karsten; Sørensen, Thorkild I. A.; Hansen, Torben; Pedersen, Oluf; Brunak, Søren; Gupta, Ramneek; Rasmussen, Simon; Lund, Ole; Bolund, Lars; Børglum, Anders D.; Eiberg, Hans; Nørgaard Flindt, Esben; Xu, Ruiqi; Sun, Jihua; Liu, Hao ; Jiang, Hui; Wang, Ou ; Cheng, Xiaofang ; Demontis, Ditte ; Besenbacher, Søren; Mailund, Thomas; Friborg, Rune M. ; Pedersen, Christian N. S.; Liu, Siyang; Chang, Yuqi; Li, Shengting; Guo, Xiaosen; Cao, Hongzhi; Ye, Chen; Maretty, Lasse; Andreas Sibbesen, Jonas; Albrechtsen, Anders; Bork-Jensen, Jette; Theil Have, Christian; Gonzalez-Izarzugaza, Jose Maria; Belling, Kirstine González-Izarzugaza; Yadav, Rachita; Grove, Jakob; Dam-Als, Thomas; Lescai, Francesco; Krogh, Anders; Wang, Jun.

    In: GigaScience, Vol. 4, No. 64, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  11. Published

    Disentangling type 2 diabetes and metformin treatment signatures in the human gut microbiota. / Forslund, Kristoffer; Hildebrand, Falk ; Nielsen, Trine N.; Falony, Gwen; Le Chatelier, Emmanuelle; Sunagawa, Shinichi; Prifti, Edi; Vieira-Silva, Sara ; Gudmundsdottir, Valborg; Pedersen, Helle Krogh; Arumugam, Manimozhiyan; Kristiansen, Karsten; Yvonne Voig, Anita; Vestergaard, Henrik; Hercog, Rajna; Costea, Paul Igor; Kultima, Jens Roat; Li, Junhua; Jørgensen, Torben; Levenez, Florence; Dore, Joël; Nielsen, Henrik Bjørn; Brunak, Søren; Raes, Jeroen; Hansen, Torben; Wang, Jun; Ehrlich, S. Dusko; Bork, Peer; Pedersen, Oluf.

    In: Nature, Vol. 528, No. 7581, 2015, p. 262-266.

    Publication: Research - peer-reviewLetter – Annual report year: 2015

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