Center for Biological Sequence Analysis

  1. 2015
  2. Published

    Acquisition of docetaxel resistance in breast cancer cells reveals upregulation of ABCB1 expression as a key mediator of resistance accompanied by discrete upregulation of other specific genes and pathways. / Ninel Hansen, Stine; Westergaard, David ; Borg Houlberg Thomsen, Mathilde; Vistesen, Mette; Nguyen Do, Khoa; Fogh, Louise; Belling, Kirstine C.; Wang, Jun; Yang, Huanming; Gupta, Ramneek; Ditzel, Henrik Jørn; Moreira, José ; Brünner, Nils; Stenvang, Jan; Schrohl, Anne-Sofie.

    In: Tumor Biology, Vol. 36, No. 6, 2015, p. 4327-4338.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  3. Published

    A global reference for human genetic variation. / Auton, Adam; Abecasis, Goncalo R.; M. Altshuler, David; M. Durbin, Richard; R. Bentley, David; Chakravarti, Aravinda; G. Clark, Andrew; Donnelly, Peter; E. Eichler, Evan; Flicek, Paul; Wang, Jun; Feng, Qiang; Fang, Xiaodong; Guo, Xiaosen; Jian, Min; Jiang, Hui; Liu, Xiao; Fang, Lin; Cao, Hongzhi; Jespersen, Jakob Berg.

    In: Nature, Vol. 526, 2015, p. 68-74.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  4. Published

    Airway Mucosal Immune-suppression in Neonates of Mothers Receiving A(H1N1)pnd09 Vaccination During Pregnancy. / Pedersen, Susanne Brix; Bischoff, Anne L.; Folsgaard, Nilofar V.; Vissing, Nadja H.; Birch, Sune; Bisgaard, Hans .

    In: Pediatric Infectious Disease Journal, Vol. 34, No. 1, 2015, p. 84-90.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  5. Published

    AllelicImbalance: An R/ bioconductor package for detecting, managing, and visualizing allele expression imbalance data from RNA sequencing. / Gådin, Jesper R.; van't Hooft, Ferdinand M.; Eriksson, Per; Folkersen, Lasse.

    In: BMC Bioinformatics, Vol. 16, No. 194, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  6. Published

    Allergic sensitization at school age is a systemic low-grade inflammatory disorder. / Chawes, B. L. K.; Stokholm, J.; Malby-Schoos, A.-M.; Kreiner-Moller, L.; Pedersen, Susanne Brix; Bisgaard, Hans Flinker.

    In: Allergy, Vol. 70, No. Suppl. 101, 1632, 2015, p. 512-512.

    Publication: Research - peer-reviewConference abstract in journal – Annual report year: 2016

  7. Published

    A modern approach for epitope prediction: identification of foot-and-mouth disease virus peptides binding bovine leukocyte antigen (BoLA) class I molecules. / Pandya, Mital; Rasmussen, Michael; Hansen, Andreas; Nielsen, Morten; Buus, Søren; Golde, William; Barlow, John.

    In: Immunogenetics, Vol. 67, No. 11-12, 2015, p. 691-703.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  8. Published

    Analysis artefacts of the INS-IGF2 fusion transcript. / Wernersson, Rasmus; Frogne, Thomas; Rescan, Claude; Hansson, Lena; Bruun, Christine; Grønborg, Mads; Jensen, Jan Nygaard; Madsen, Ole Dragsbæk.

    In: B M C Molecular Biology, Vol. 16, No. 13, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  9. Published

    A novel genomic alteration of LSAMP associates with aggressive prostate cancer in African American men. / Petrovics, Gyorgy; Li, Hua; Stümpel, Tanja; Tan, Shyh-Han; Young, Denise; Katta, Shilpa; Li, Qiyuan; Ying, Kai; Klocke, Bernward; Ravindranath, Lakshmi; Kohaar, Indu; Chen, Yongmei; Ribli, Dezső; Grote, Korbinian; Zou, Hua; Cheng, Joseph; Dalgard, Clifton L.; Zhang, Shimin; Csabai, Istvan; Kagan, Jacob; Takeda, David; Loda, Massimo; Scherf, Matthias; Seifert, Martin; Gaiser, Timo; McLeod, David G.; Szallasi, Zoltan Imre; Ebner, Reinhard; Werner, Thomas; Sesterhenn, Isabell A; Freedman, Matthew; Dobi, Albert; Srivastava, Shiv.

    In: EBioMedicine, Vol. 2, No. 12, 2015, p. 1957-1964.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  10. Published

    A novel in vitro wound biofilm model used to evaluate low-frequency ultrasonic-assisted wound debridement. / Crone, S.; Garde, Christian; Bjarnsholt, T.; Alhede, Morten.

    In: Journal of Wound Care, Vol. 24, No. 2, 2015, p. 64-72.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  11. Published

    Applying genetics in inflammatory disease drug discovery. / Folkersen, Lasse; Biswas, Shameek; Frederiksen, Klaus Stensgaard; Keller, Pernille; Fox, Brian; Fleckner, Jan.

    In: Drug Discovery Today, Vol. 20, No. 10, 2015, p. 1176-1181.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

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