Center for Biological Sequence Analysis

  1. 2015
  2. Published

    A retrospective metagenomics approach to studying Blastocystis. / Andersen, Lee O'Brien; Bonde, Ida; Nielsen, Henrik Bjørn; Stensvold, Christen Rune.

    In: F E M S Microbiology Reviews, Vol. 91, No. 7, fiv072, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  3. Published

    Automated benchmarking of peptide-MHC class I binding predictions. / Trolle, Thomas; Metushi, Imir G.; Greenbaum, Jason; Kim, Yohan; Sidney, John; Lund, Ole; Sette, Alessandro; Peters, Bjoern; Nielsen, Morten.

    In: Bioinformatics, Vol. 31, No. 13, 2015, p. 2174-2181.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  4. Published

    Bioinformatics prediction of swine MHC class I epitopes from Porcine Reproductive and Respiratory Syndrome Virus. / Welner, Simon; Nielsen, Morten; Lund, Ole; Jungersen, Gregers; Larsen, Lars Erik.

    2015. Abstract from Keystone Symposia on Molecular and Cellular Biology: Accelerating life science discovery, Keystone, United States.

    Publication: Research - peer-reviewConference abstract for conference – Annual report year: 2015

  5. Published

    Breast milk IL-1β level associates with development of eczema during early childhood. / Jepsen, A. A.; Chawes, B. L. K.; Carson, C. G.; Malby-Schoos, A.-M.; Hammerich Thysen, A.; Waage, J.; Pedersen, Susanne Brix; Bisgaard, Hans Flinker.

    In: Allergy, Vol. 70, No. Suppl. 101, 1604, 2015, p. 405-405.

    Publication: Research - peer-reviewConference abstract in journal – Annual report year: 2016

  6. Published

    CAUSEL: an epigenome- and genome-editing pipeline for establishing function of noncoding GWAS variants. / Spisák, Sándor; Lawrenson, Kate; Fu, Yanfang; Csabai, Istvan; Cottman, Rebecca T.; Seo, Ji-Heui; Haiman, Christopher; Han, Ying; Lenci, Romina; Li, Qiyuan; Tisza, Viktória; Szallasi, Zoltan Imre; Herbert, Zachery T.; Chabot, Matthew; Pomerantz, Mark; Solymosi, Norbert; Gayther, Simon A.; Joung, J. Keith; Freedman, Matthew L.

    In: Nature Medicine, Vol. 21, No. 11, 2015, p. 1357-1363.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  7. Published

    Changing the way science is taught through gamified laboratories. / Bonde, Mads; Makransky, G.; Wandall, J.; Larsen, Mette Voldby; Morsing, M.; Jarmer, Hanne Østergaard; Lopez-Cordoba, A.; Sommer, Morten Otto Alexander.

    EDULEARN15 Proceedings. 2015. p. 6697-6703 (Edulearn).

    Publication: Research - peer-reviewArticle in proceedings – Annual report year: 2016

  8. Published
  9. Published

    Clonal status of actionable driver events and the timing of mutational processes in cancer evolution. / McGranahan, Nicholas; Favero, Francesco; de Bruin, Elza C.; Birkbak, Nicolai Juul; Szallasi, Zoltan Imre; Swanton, Charles.

    In: Science Translational Medicine, Vol. 7, No. 283, 283ra54, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  10. Published

    Convolutional LSTM Networks for Subcellular Localization of Proteins. / Nielsen, Henrik; Sønderby, Søren Kaae; Sønderby, Casper Kaae; Winther, Ole.

    2015. Abstract from First Annual Danish Bioinformatics Conference, Odense, Denmark.

    Publication: Research - peer-reviewConference abstract for conference – Annual report year: 2015

  11. Published

    Convolutional LSTM Networks for Subcellular Localization of Proteins. / Sønderby, Søren Kaae; Sønderby, Casper Kaae; Nielsen, Henrik; Winther, Ole.

    Algorithms for Computational Biology: Second International Conference, AlCoB 2015, Mexico City, Mexico, August 4-5, 2015, Proceedings. ed. / Adrian-Horia Dediu; Francisco Hernández-Quiroz; Carlos Martín-Vide; David A. Rosenblueth. Vol. 9199 Springer, 2015. p. 68-80 (Lecture Notes in Computer Science).

    Publication: Research - peer-reviewArticle in proceedings – Annual report year: 2015

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