Center for Biological Sequence Analysis

  1. 2016
  2. Published

    KinMutRF: a random forest classifier of sequence variants in the human protein kinase superfamily. / Pons, Tirso; Vazquez, Miguel; Matey-Hernandez, María Luisa; Brunak, Søren; Valencia, Alfonso; Gonzalez-Izarzugaza, Jose Maria.

    In: BMC Genomics, Vol. 17, No. Suppl. 2, 396, 2016.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  3. Published

    Large-scale detection of antigen-specific T cells using peptide-MHC-I multimers labeled with DNA barcodes. / Bentzen, Amalie Kai; Marquard, Andrea Marion; Lyngaa, Rikke Birgitte; Saini, Sunil Kumar; Andersen, Sofie Ramskov; Donia, Marco; Such, Lina; Furness, Andrew J. S.; McGranahan, Nicholas; Rosenthal, Rachel; Straten, Per Thor; Szallasi, Zoltan Imre; Svane, Inge Marie; Swanton, Charles; Quezada, Sergio A.; Jakobsen, Søren Nyboe; Eklund, Aron Charles; Hadrup, Sine Reker.

    In: Nature Biotechnology, Vol. 34, No. 10, 2016, p. 1037-1045.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  4. Published

    Low TLR7 gene expression in atherosclerotic plaques is associated with major adverse cardio- and cerebrovascular events. / Karadimou, Glykeria; Folkersen, Lasse; Berg, Martin; Perisic, Ljubica; Discacciati, Andrea; Roy, Joy; Hansson, Göran K; Persson, Jonas; Paulsson-Berne, Gabrielle.

    In: Cardiovascular Research, Vol. 113, No. 1, 2016, p. 30-39.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  5. Published

    LOX1 inhibition with small molecules. / Gousiadou, Chryssoula; Kouskoumvekaki, Irene.

    In: Journal of Molecular Graphics and Modelling, Vol. 63, 2016, p. 99-109.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  6. E-pub ahead of print

    Major differences between human atopic dermatitis and murine models as determined by global transcriptomic profiling. / Ewald, David Adrian; Noda, Shinji; Oliva, Margeaux; Litman, Thomas; Nakajima, Saeko; Li, Xuan; Xu, Hui; Scheipers, Peter; Svitacheva, Naila; Labuda, Tord; Krueger, James G.; Suárez-Fariñas, Mayte; Kabashima, Kenji; Guttman-Yassky, Emma.

    In: Journal of Allergy and Clinical Immunology, 2016.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  7. Published

    Maximum-Entropy Models of Sequenced Immune Repertoires Predict Antigen-Antibody Affinity. / Asti, Lorenzo; Uguzzoni, Guido; Marcatili, Paolo; Pagnani, Andrea.

    In: P L o S Computational Biology (Online), Vol. 12, No. 4, e1004870, 2016.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  8. Published

    MECP2 Is a Frequently Amplified Oncogene with a Novel Epigenetic Mechanism That Mimics the Role of Activated RAS in Malignancy. / Neupane, Manish; Clark, Allison P.; Landini, Serena; Birkbak, Nicolai Juul; Eklund, Aron Charles; Lim, Elgene; Culhane, Aedin C.; Barry, William T.; Schumacher, Steven E.; Beroukhim, Rameen; Szallasi, Zoltan Imre; Vidal, Marc; Hill, David E.; Silver, Daniel P.

    In: Cancer Discovery, Vol. 6, No. 1, 2016, p. 45-58.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  9. Published

    Meta-analysis of proportion estimates of Extended-Spectrum-Beta-Lactamase-producing Enterobacteriaceae in East Africa hospitals. / Sonda, Tolbert; Kumburu, Happiness; van Zwetselaar, Marco; Alifrangis, Michael; Lund, Ole; Kibiki, Gibson; Aarestrup, Frank Møller.

    In: Antimicrobial Resistance and Infection Control, Vol. 5, 18, 2016.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  10. Published

    Metabolic syndrome and subsequent risk of type 2 diabetes and cardiovascular disease in elderly women Challenging the current definition : Challenging the current definition. / Møller, Katrine Dragsbæk; Neergaard, Jesper; Laursen, Janne Marie; Hansen, Henrik B.; Christiansen, Claus; Beck-Nielsen, Henning; Karsdal, Morten A.; Pedersen, Susanne Brix; Henriksen, Kim.

    In: Medicine (united States), Vol. 95, No. 36, e4806, 2016.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  11. Published
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