Center for Biological Sequence Analysis

  1. 2016
  2. Published

    Identification of differentially IgA-coated bacteria in inflammation-induced colorectal cancer. / Eriksen, Carsten; Holm, Jacob Bak; Yassin, Mohammad ; Olsen, Jørgen ; Pedersen, Anders Elm; Kristiansen, Karsten; Brix, Susanne .

    2016. Poster session presented at 10th European Mucosal Immunology Group meeting, Copenhagen, Denmark.

    Publication: ResearchPoster – Annual report year: 2016

  3. Published

    Identification of Known and Novel Recurrent Viral Sequences in Data from Multiple Patients and Multiple Cancers. / Friis-Nielsen, Jens; Kjartansdóttir, Kristín Rós ; Mollerup, Sarah ; Asplund, Maria ; Mourier, Tobias ; Holm Jensen, Randi ; Arn Hansen, Thomas; Rey-Iglesia, Alba ; Vinner, Lasse ; Fridholm, Helena ; Nielsen, Lars Peter; Willerslev, Eske; Sicheritz-Pontén, Thomas; Lund, Ole; Hansen, Anders Johannes ; Gonzalez-Izarzugaza, Jose Maria; Brunak, Søren.

    In: Viruses, Vol. 8, No. 53, 2016.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  4. Published

    Immunogenicity of HLA Class I and II Double Restricted Influenza A-Derived Peptides. / Pedersen, Sara Ram; Christensen, Jan Pravsgaard; Buus, Søren; Rasmussen, Michael; Korsholm, Karen Smith; Nielsen, Morten; Claesson, Mogens Helweg.

    In: P L o S One, Vol. 11, No. 1, e0145629, 2016.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  5. Published

    Impact Of Mutation-derived Antigens In Immune Recognition Of Hematological Malignancies, Specifically Myeloid Dysplastic Syndromes (MDS). / Saini, Sunil Kumar; Dorfmüller, S.; Bjerregaard, Anne-Mette; Bentzen, Amalie Kai; Eklund, Aron Charles; Medyouf, H.; Hadrup, Sine Reker.

    In: Haematologica, Vol. 101, No. S1, P237, 2016, p. 66-66.

    Publication: Research - peer-reviewConference abstract in journal – Annual report year: 2016

  6. Published

    Improved pan-specific prediction of MHC class I peptide binding using a novel receptor clustering data partitioning strategy. / Mattsson, Andreas Holm; Kringelum, Jens Vindahl; Garde, C.; Nielsen, Morten.

    In: Hla, Vol. 88, No. 6, 2016, p. 287–292.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  7. Published

    Integration of Known DNA, RNA and Protein Biomarkers Provides Prediction of Anti-TNF Response in Rheumatoid Arthritis : results from the COMBINE study. / Folkersen, Lasse; Brynedal, Boel; Marcela Diaz-Gallo, Lina; Ramsköld, Daniel; Shchetynsky, Klementy; Westerlind, Helga; Sundström, Yvonne; Schepis, Danika; Hensvold, Aase; Vivar, Nancy; Eloranta, Maija-Leena; Rönnblom, Lars; Brunak, Søren; Malmström, Vivianne; Catrina, Anca; G. W. Moerch, Ulrik; Klareskog, Lars; Padyukov, Leonid; Berg, Louise.

    In: Molecular Medicine, Vol. 22, 2016, p. 322-328.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  8. Published

    Integrative analysis of miRNA and gene expression reveals regulatory networks in tamoxifen-resistant breast cancer. / Joshi, Tejal; Elias, Daniel; Stenvang, Jan; Alves, Carla L.; Teng, Fei; Lyng, Maria B.; Lykkesfeldt, Anne E.; Brünner, Nils; Wang, Jun; Gupta, Ramneek; Workman, Christopher; Ditzel, Henrik J.

    In: OncoTarget, Vol. 7, No. 35, 2016, p. 57239-57253.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  9. Published

    Investigating the impact of missense mutations in hCES1 by in silico structure-based approaches. / Nzabonimpa, Grace Shema; Rasmussen, Henrik Berg; Brunak, Søren; Taboureau, Olivier .

    In: Drug Metabolism and Personalized Therapy, Vol. 31, No. 2, 2016, p. 97-106.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  10. Published

    Plasmodium falciparum var genes expressed in children with severe malaria encode CIDRα1 domains. / Jespersen, Jakob S.; Wang, Christian W.; Mkumbaye, Sixbert I. ; Minja, Daniel T R ; Petersen, Bent; Turner, Louise; Petersen, Jens E. V.; Lusingu, John P. A.; Theander, Thor G.; Lavstsen, Thomas.

    In: EMBO Molecular Medicine, Vol. 8, No. 7, 2016, p. 685-829.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  11. Published

    Propionibacterium acnes: disease-causing agent or common contaminant? Detection in diverse patient samples by next generation sequencing. / Mollerup, Sarah; Friis-Nielsen, Jens; Vinner, Lasse; Richter, Stine Raith; Fridholm, Helena; Herrera, Jose Romero; Lund, Ole; Brunak, Søren; Gonzalez-Izarzugaza, Jose Maria; Mourier, Tobias; Nielsen, Lars Peter; Hansen, Anders Johannes.

    In: Journal of Clinical Microbiology, Vol. 54, No. 4, 2016, p. 980-987.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

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