Center for Biological Sequence Analysis

  1. 2016
  2. Published

    Molecular characterization of irinotecan (SN-38) resistant human breast cancer cell lines. / Jandu, Haatisha; Aluzaite, Kristina; Fogh, Louise; Thrane, Sebastian Wingaard; Noer, Julie B.; Proszek, Joanna; Nguyen Do, Khoa; Hansen, Stine Ninel; Damsgaard, Britt; Nielsen, Signe Lykke; Stougaard, Magnus; Knudsen, Birgitta R.; Moreira, Jose; Hamerlik, Petra; Gajjar, Madhavsai; Smid, Marcel; Martens, John; Foekens, John; Pommier, Yves; Brunner, Nils; Schrohl, Anne-Sofie; Stenvang, Jan.

    In: B M C Cancer, Vol. 16, No. 1, 34, 2016.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  3. Published

    Molecular markers for tracking the origin and worldwide distribution of invasive strains of Puccinia striiformis. / Walter, Stephanie; Ali, Sajid; Kemen, Eric; Nazari, Kumarse; Bahri, Bochra A.; Enjalbert, Jérôme; Hansen, Jens G.; Brown, James K.M.; Sicheritz-Pontén, Thomas; Jones, Jonathan; de Vallavieille-Pope, Claude; Hovmøller, Mogens S.; Justesen, Annemarie Fejer.

    In: Ecology and Evolution, Vol. 6, No. 9, 2016, p. 2790-2804.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  4. Published

    Multi-omic profiling of EPO-producing CHO cell panel reveals metabolic adaptation to heterologous protein production. / Ley, Daniel; Kazemi Seresht, Ali; Engmark, Mikael; Magdenoska, Olivera; Nielsen, Kristian Fog; Kildegaard, Helene Faustrup; Andersen, Mikael Rørdam.

    2016. Abstract from Cell Culture Engineering XV, La Quinta, CA, United States.

    Publication: Research - peer-reviewConference abstract for conference – Annual report year: 2016

  5. Published

    Neil3-dependent base excision repair regulates lipid metabolism and prevents atherosclerosis in Apoe-deficient mice. / Skarpengland, Tonje; Holm, Sverre; Scheffler, Katja; Gregersen, Ida; Dahl, Tuva B.; Suganthan, Rajikala; Segers, Filip M.; Østlie, Ingunn; Otten, Jeroen J. T.; Luna, Luisa; Ketelhuth, Daniel F. J.; Lundberg, Anna M.; Neurauter, Christine G.; Hildrestrand, Gunn; Skjelland, Mona; Bjørndal, Bodil; Svardal, Asbjørn M.; Iversen, Per O.; Hedin, Ulf; Nygård, Ståle; Olstad, Ole K.; Krohg-Sorensen, Kirsten; Slupphaug, Geir; Eide, Lars; Kusnierczyk, Anna; Folkersen, Lasse; Ueland, Thor; Berge, Rolf K.; Hansson, Göran K.; Biessen, Erik A. L.; Halvorsen, Bente; Bjørås, Magnar; Aukrust, Pål.

    In: Scientific Reports, Vol. 6, 28337, 2016.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  6. Published

    NetMHCpan-3.0; improved prediction of binding to MHC class I molecules integrating information from multiple receptor and peptide length datasets. / Nielsen, Morten; Andreatta, Massimo.

    In: Genome Medicine, Vol. 8, No. 1, 33, 2016.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  7. Published
  8. Published

    Nutritional Stress Induced by Tryptophan-Degrading Enzymes Results in ATF4-Dependent Reprogramming of the Amino Acid Transporter Profile in Tumor Cells. / Timosenko, Elina; Ghadbane, Hemza; Silk, Jonathan D; Shepherd, Dawn; Gileadi, Uzi; Howson, Lauren J.; Laynes, Robert; Zhao, Qi; Strausberg, Robert L.; Olsen, Lars Rønn; Taylor, Stephen; Buffa, Francesca M.; Boyd, Richard; Cerundolo, Vincenzo.

    In: Cancer Research, Vol. 76, No. 21, 2016, p. 6193-6204.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  9. Published

    Obesity and Bariatric Surgery Drive Epigenetic Variation of Spermatozoa in Humans. / Donkin, Ida; Versteyhe, Soetkin; Ingerslev, Lars R.; Qian, Kui; Mechta, Mie; Nordkap, Loa; Mortensen, Brynjulf; Appel, Emil Vincent R; Jørgensen, Niels; Kristiansen, Viggo B.; Hansen, Torben; Workman, Christopher; Zierath, Juleen R.; Barrès, Romain.

    In: Cell Metabolism, Vol. 23, No. 2, 2016, p. 369–378.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  10. Published

    Opposite prognostic roles of HIF1β and HIF2β expressions in bone metastatic clear cell renal cell cancer. / Szendroi, Attila; Szász, A. Marcell; Kardos, Magdolna; Tőkés, Anna-Mária; Idan, Roni; Szűcs, Miklós; Kulka, Janina; Nyirady, Péter; Szendrői, Miklós; Szallasi, Zoltan Imre; Győrffy, Balázs; Tímár, József.

    In: OncoTarget, Vol. 7, No. 27, 2016, p. 42086-42098.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  11. Published

    Outbreaks of Aleutian mink disease in farmed mink (Neovison vison) in Denmark: molecular characterization by partial NS1 gene sequencing. / Hjulsager, Charlotte Kristiane; Ryt-Hansen, Pia; Hagberg, E. E.; Chriél, Mariann; Struve, T.; Krarup, A.; Pedersen, Anders Gorm; Larsen, Lars Erik.

    Proceedings of the XIth International Scientific Congress in Fur Animal Production. ed. / Aske Mäki-Tanila; Jarmo Valaja; Jaakko Mononen; Tarja Sironen; Olli Vapalahti. Helsinki, Finland : Libris, 2016. p. 85-87 (Scientifur; No. 3/4, Vol. 40).

    Publication: Research - peer-reviewConference abstract in proceedings – Annual report year: 2016

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