Center for Biological Sequence Analysis

  1. 2016
  2. Published

    The limits and potential of paleogenomic techniques for reconstructing grapevine domestication. / Wales, Nathan; Ramos Madrigal, Jazmín; Cappellini, Enrico; Carmona Baez, Aldo; Samaniego Castruita, José Alfredo; Romero-Navarro, J. Alberto; Carøe, Christian; Ávila-Arcos, María C.; Peñaloza, Fernando; Moreno-Mayar, J. Víctor; Gasparyan, Boris; Zardaryan, Diana; Bagoyan, Tamara; Smith, Alexia; Pinhasi, Ron; Bosi, Giovanna; Fiorentino, Girolamo; Grasso, Anna Maria; Celant, Alessandra; Bar-Oz, Guy; Tepper, Yotam; Hall, Allan; Scalabrin, Simone; Miculan, Mara; Morgante, Michele; Di Gaspero, Gabriele; Gilbert, M. Thomas P.

    In: Journal of Archaeological Science, Vol. 72, 2016, p. 57-70.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  3. Published

    The stepwise evolution of the exome during acquisition of docetaxel resistance in breast cancer cells. / Hansen, Stine Ninel; Ehlers, Natasja Spring; Zhu, Shida; Thomsen, Mathilde Borg Houlberg; Nielsen, Rikke Linnemann; Liu, Dongbing; Wang, Guangbiao; Hou, Yong; Zhang, Xiuqing; Xu, Xun; Bolund, Lars; Yang, Huanming; Wang, Jun; Moreira, Jose; Ditzel, Henrik J.; Brünner, Nils; Schrohl, Anne-Sofie; Stenvang, Jan; Gupta, Ramneek.

    In: BMC Genomics, Vol. 17, 442, 2016.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  4. Published

    Tools and data services registry : a community effort to document bioinformatics resources. / Ison, Jon; Rapacki, Kristoffer; Ménager, Hervé; Kalaš, Matúš; Rydza, Emil Karol; Chmura, Piotr Jaroslaw; Anthon, Christian; Beard, Niall; Berka, Karel; Bolser, Dan; Booth, Tim ; Bretaudeau, Anthony; Brezovsky, Jan; Casadio, Rita; Cesareni, Gianni; Coppens, Frederik; Cornell, Michael; Cuccuru, Gianmauro; Davidsen, Kristian; Vedova, Gianluca Della; Dogan, Tunca; Doppelt-Azeroual, Olivia; Emery, Laura; Gasteiger, Elisabeth; Gatter, Thomas; Goldberg, Tatyana; Grosjean, Marie; Grüning, Björn; Helmer-Citterich, Manuela; Ienasescu, Hans; Ioannidis, Vassilios; Jespersen, Martin Closter; Jimenez, Rafael; Juty, Nick; Juvan, Peter; Koch, Maximilian; Laibe, Camille; Li, Jing-Woei; Licata, Luana; Mareuil, Fabien; Mičetić, Ivan; Friborg, Rune Møllegaard; Moretti, Sebastien; Morris, Chris; Möller, Steffen; Nenadic, Aleksandra; Peterson, Hedi; Profiti, Giuseppe; Rice, Peter; Romano, Paolo; Roncaglia, Paola; Saidi, Rabie; Schafferhans, Andrea; Schwämmle, Veit; Smith, Callum; Sperotto, Maria Maddalena; Stockinger, Heinz; Vařeková, Radka Svobodová; Tosatto, Silvio C. E.; de la Torre, Victor; Uva, Paolo; Via, Allegra; Yachdav, Guy; Zambelli, Federico; Vriend, Gert; Rost, Burkhard; Parkinson, Helen; Løngreen, Peter; Brunak, Søren.

    In: Nucleic Acids Research, Vol. 44, No. D1, gkv1116, 2016, p. D38-D47.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  5. Published

    Transcriptional interactions suggest niche segregation among microorganisms in the human gut. / Metagenomics of the Human Intestinal Tract (MetaHIT) Consortium.

    In: Nature Microbiology, Vol. 1, 16152, 2016.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  6. Published

    Tumor suppressor microRNAs are downregulated in myelodysplastic syndrome with spliceosome mutations. / Aslan, Derya; Garde, Christian; Nygaard, Mette Katrine; Helbo, Alexandra Søgaard; Dimopoulos, Konstantinos; Hansen, Jakob Werner; Severinsen, Marianne Tang; Treppendahl, Marianne Bach; Sjø, Lene Dissing; Grønbæk, Kirsten; Kristensen, Lasse Sommer.

    In: OncoTarget, Vol. 7, No. 9, 2016, p. 9951-9963.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  7. Published

    Using expected sequence features to improve basecalling accuracy of amplicon pyrosequencing data. / Rask, Thomas Salhøj; Petersen, Bent; Chen, Donald S.; Day, Karen P.; Pedersen, Anders Gorm.

    In: B M C Bioinformatics, Vol. 17, No. 1, 176, 2016.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  8. Published

    wKinMut-2: Identification and Interpretation of Pathogenic Variants in Human Protein Kinases. / Vazquez, Miguel; Pons, Tirso; Brunak, Søren; Valencia, Alfonso; Gonzalez-Izarzugaza, Jose Maria.

    In: Human Mutation, Vol. 37, No. 1, 2016, p. 36-42.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  9. 2015
  10. Published

    A catalog of the mouse gut metagenome. / Xiao, Liang; Feng, Qiang; Liang, Suisha; Sonne, Si Brask; Xia, Zhongkui; Qiu, Xinmin; Li, Xiaoping; Long, Hua; Zhang, Jianfeng; Zhang, Dongya; Liu, Chuan; Fang, Zhiwei; Chou, Joyce; Glanville, Jacob; Hao, Qin; Kotowska, Dorota; Colding, Camilla; Licht, Tine Rask; Wu, Donghai; Yu, Jun; Sung, Joseph Jao Yiu; Liang, Qiaoyi; Li, Junhua; Jia, Huijue; Lan, Zhou; Tremaroli, Valentina; Dworzynski, Piotr; Nielsen, H Bjørn; Bäckhed, Fredrik; Doré, Joël; Le Chatelier, Emmanuelle; Ehrlich, S. Dusko; Lin, John C.; Arumugam, Manimozhiyan; Wang, Jun; Madsen, Lise; Kristiansen, Karsten.

    In: Nature Biotechnology, Vol. 33, No. 10, 2015, p. 1103-1108.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  11. Published

    Accurate pan-specific prediction of peptide-MHC class II binding affinity with improved binding core identification. / Andreatta, Massimo; Karosiene, Edita; Rasmussen, Michael; Stryhn, Anette; Buus, Søren; Nielsen, Morten.

    In: Immunogenetics, Vol. 67, No. 11-12, 2015, p. 641-650.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  12. Published

    A computational method for identification of vaccine targets from protein regions of conserved human leukocyte antigen binding. / Olsen, Lars Rønn; Simon, Christian; Kudahl, Ulrich J.; Bagger, Frederik Otzen; Winther, Ole; Reinherz, Ellis L.; Zhang, Guang L.; Brusic, Vladimir.

    In: BMC Medical Genomics, Vol. 8, No. Suppl. 4, 2015, p. 566.

    Publication: Research - peer-reviewConference article – Annual report year: 2016

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