Center for Biological Sequence Analysis

  1. 2012
  2. Published

    Recommendations for Mass Spectrometry Data Quality Metrics for Open Access Data (Corollary to the Amsterdam Principles). / Kinsinger, Christopher R.; Apffel, James; Baker, Mark; Bian, Xiaopeng; Borchers, Christoph H.; Bradshaw, Ralph; Brusniak, Mi-Youn; Chan, Daniel W.; Deutsch, Eric W.; Domon, Bruno; Gorman, Jeff; Grimm, Rudolf; Hancock, William; Hermjakob, Henning; Horn, David; Hunter, Christie; Kolar, Patrik; Kraus, Hans-Joachim; Langen, Hanno; Linding, Rune; Moritz, Robert L.; Omenn, Gilbert S.; Orlando, Ron; Pandey, Akhilesh; Ping, Peipei; Rahbar, Amir; Rivers, Robert; Seymour, Sean L.; Simpson, Richard J.; Slotta, Douglas; Smith, Richard D.; Stein, Stephen E.; Tabb, David L.; Tagle, Danilo; Yates, John R., III; Rodriguez, Henry.

    In: Proteomics, Vol. 12, No. 1, 2012, p. 11-20.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  3. Published

    Recommendations for Mass Spectrometry Data Quality Metrics for Open Access Data (Corollary to the Amsterdam Principles). / Kinsinger, Christopher R.; Apffel, James; Baker, Mark; Bian, Xiaopeng; Borchers, Christoph H.; Bradshaw, Ralph; Brusniak, Mi-Youn; Chan, Daniel W.; Deutsch, Eric W.; Domon, Bruno; Gorman, Jeff; Grimm, Rudolf; Hancock, William; Hermjakob, Henning; Horn, David; Hunter, Christie; Kolar, Patrik; Kraus, Hans-Joachim; Langen, Hanno; Linding, Rune; Moritz, Robert L.; Omenn, Gilbert S.; Orlando, Ron; Pandey, Akhilesh; Ping, Peipei; Rahbar, Amir; Rivers, Robert; Seymour, Sean L.; Simpson, Richard J.; Slotta, Douglas; Smith, Richard D.; Stein, Stephen E.; Tabb, David L.; Tagle, Danilo; Yates, John R., III; Rodriguez, Henry.

    In: Journal of Proteome Research, Vol. 11, No. 2, 2012, p. 1412-1419.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  4. Published

    Relative entropy differences in bacterial chromosomes, plasmids, phages and genomic islands. / Bohlin, Jon; van Passel, Mark W. J.; Snipen, Lars; Kristoffersen, Anja B.; Ussery, David; Hardy, Simon P.

    In: B M C Genomics, Vol. 13, No. 66, 2012.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  5. Published
  6. Published

    Scale-free behaviour of amino acid pair interactions in folded proteins. / Petersen, Steffen B. ; Neves-Petersen, Maria Teresa; Mortensen, Rasmus J. ; Henriksen, Svend B. ; Geertz-Hansen, Henrik Marcus.

    In: P L o S One, Vol. 7, No. 7, 2012, p. e41322-e41322.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  7. Published
  8. Published

    Sequencing Chromosomal Abnormalities Reveals Neurodevelopmental Loci that Confer Risk across Diagnostic Boundaries. / Talkowski, Michael E.; Rosenfeld, Jill A.; Blumenthal, Ian; Pillalamarri, Vamsee; Chiang, Colby; Heilbut, Adrian; Ernst, Carl; Hanscom, Carrie; Rossin, Elizabeth; Lindgren, Amelia M.; Pereira, Shahrin; Ruderfer, Douglas; Kirby, Andrew; Ripke, Stephan; Harris, David J.; Lee, Ji-Hyun; Ha, Kyungsoo; Kim, Hyung-Goo; Solomon, Benjamin D.; Gropman, Andrea L.; Lucente, Diane; Sims, Katherine; Ohsumi, Toshiro K.; Borowsky, Mark L.; Loranger, Stephanie; Quade, Bradley; Hansen, Kasper Lage; Miles, Judith; Wu, Bai-Lin; Shen, Yiping; Neale, Benjamin; Shaffer, Lisa G.; Daly, Mark J.; Morton, Cynthia C.; Gusella, James F.

    In: Cell, Vol. 149, No. 3, 2012, p. 525-537.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  9. Published

    Sharing programming resources between Bio* projects through remote procedure call and native call stack strategies. / Prins, Pjotr; Goto, Naohisa; Yates, Andrew; Gautier, Laurent; Willis, Scooter; Fields, Christopher; Katayama, Toshiaki.

    In: Methods in Molecular Biology, Vol. 856, 2012, p. 513-527.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  10. Published
  11. Published

    System chemical biology studies of endocrine disruptors. / Taboureau, Olivier; Oprea, Tudor I.

    2012. Abstract from 242nd National Meeting of the American-Chemical-Society (ACS), Denver, CO, United States.

    Publication: Research - peer-reviewConference abstract for conference – Annual report year: 2012

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