Center for Biological Sequence Analysis

  1. 2011
  2. Published

    Rational Discovery of T Helper Epitopes Specific for Bovine Infections with Mycobacterium avium ssp paratuberculosis. / Lundegaard, Claus; Aagaard, C.; Ussery, David; Andersen, P. L.; Jungersen, Gregers.

    In: Scandinavian Journal of Immunology, Vol. 73, No. 4, 2011, p. 392-393.

    Publication: Research - peer-reviewConference abstract in journal – Annual report year: 2011

  3. Published

    Recommendations for Mass Spectrometry Data Quality Metrics for Open Access Data (Corollary to the Amsterdam Principles). / Kinsinger, Christopher R.; Apffel, James; Baker, Mark; Bian, Xiaopeng; Borchers, Christoph H.; Bradshaw, Ralph; Brusniak, Mi-Youn; Chan, Daniel W.; Deutsch, Eric W.; Domon, Bruno; Gorman, Jeff; Grimm, Rudolf; Hancock, William; Hermjakob, Henning; Horn, David; Hunter, Christie; Kolar, Patrik; Kraus, Hans-Joachim; Langen, Hanno; Linding, Rune; Moritz, Robert L.; Omenn, Gilbert S.; Orlando, Ron; Pandey, Akhilesh; Ping, Peipei; Rahbar, Amir; Rivers, Robert; Seymour, Sean L.; Simpson, Richard J.; Slotta, Douglas; Smith, Richard D.; Stein, Stephen E.; Tabb, David L.; Tagle, Danilo; Yates, John R., III; Rodriguez, Henry.

    In: Molecular and Cellular Proteomics, Vol. 10, No. 12, 2011, p. O111.015446.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  4. Published

    Recommendations for Mass Spectrometry Data Quality Metrics for Open Access Data (Corollary to the Amsterdam Principles). / Kinsinger, Christopher R.; Apffel, James; Baker, Mark; Bian, Xiaopeng; Borchers, Christoph H.; Bradshaw, Ralph; Brusniak, Mi-Youn; Chan, Daniel W.; Deutsch, Eric W.; Domon, Bruno; Gorman, Jeff; Grimm, Rudolf; Hancock, William; Hermjakob, Henning; Horn, David; Hunter, Christie; Kolar, Patrik; Kraus, Hans-Joachim; Langen, Hanno; Linding, Rune; Moritz, Robert L.; Omenn, Gilbert S.; Orlando, Ron; Pandey, Akhilesh; Ping, Peipei; Rahbar, Amir; Rivers, Robert; Seymour, Sean L.; Simpson, Richard J.; Slotta, Douglas; Smith, Richard D.; Stein, Stephen E.; Tabb, David L.; Tagle, Danilo; Yates, John R., III; Rodriguez, Henry.

    In: Proteomics - Clinical Applications, Vol. 5, No. 11-12, 2011, p. 580-589.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  5. Published

    Response to Comment on "Positive Selection of Tyrosine Loss in Metazoan Evolution". / Tan, Chris Soon Heng; Schoof, Erwin; Creixell, Pau; Pasculescu, Adrian; Lim, Wendell A.; Pawson, Tony; Bader, Gary D.; Linding, Rune.

    In: Science, Vol. 332, No. 6032, 2011, p. 917.

    Publication: Research - peer-reviewJournal article – Annual report year: 2011

  6. Published
  7. Published

    Role of Natural Killer and Dendritic Cell Crosstalk in Immunomodulation by Commensal Bacteria Probiotics. / Rizzello, Valeria; Bonaccorsi, Irene; Dongarra, Maria Luisa; Fink, Lisbeth Nielsen; Ferlazzo, Guido.

    In: Journal of Biomedicine and Biotechnology, Vol. 2011, 473097, 2011.

    Publication: Research - peer-reviewJournal article – Annual report year: 2011

  8. Published

    SignalP 4.0: discriminating signal peptides from transmembrane regions. / Petersen, Thomas Nordahl; Brunak, Søren; von Heijne, Gunnar; Nielsen, Henrik.

    In: Nature Methods, Vol. 8, No. 10, 2011, p. 785-786.

    Publication: Research - peer-reviewLetter – Annual report year: 2011

  9. Published

    Temperature influences the expression profiling of immune response genes in rainbow trout following DNA vaccination and VHS virus infection. / Einer-Jensen, Katja; Gautier, Laurent; Rasmussen, Jesper Skou; Lorenzen, Ellen; Christensen, Mikkel Black; Villanueva, Sara A.; Martin, Samuel; Evensen, Øystein; Schyth, Brian Dall; Lorenzen, Niels.

    2011. Abstract from Joint Western Fish Disease Workshop & AFS fish Health Section meeting, Nanaimo, British Columbia, Canada, .

    Publication: Research - peer-reviewConference abstract for conference – Annual report year: 2011

  10. Published
  11. Published

    The Genomic Standards Consortium. / Field, Dawn; Amaral-Zettler, Linda; Cochrane, Guy; Cole, James R.; Dawyndt, Peter; Garrity, George M.; Gilbert, Jack; Glöckner, Frank Oliver; Hirschman, Lynette; Karsch-Mizrachi, Ilene; Klenk, Hans-Peter; Knight, Rob; Kottmann, Renzo; Kyrpides, Nikos; Meyer, Folker; San Gil, Inigo; Sansone, Susanna-Assunta; Schriml, Lynn M.; Sterk, Peter; Tatusova, Tatiana; Ussery, David; White, Owen; Wooley, John.

    In: P L o S Biology, Vol. 9, No. 6, 2011, p. e1001088.

    Publication: Research - peer-reviewJournal article – Annual report year: 2011

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