Center for Biological Sequence Analysis

  1. 2011
  2. Published

    Linking Genotype and Phenotype of Saccharomyces cerevisiae Strains Reveals Metabolic Engineering Targets and Leads to Triterpene Hyper-Producers. / Madsen, Karina Marie; Udatha, Gupta D. B. R. K.; Semba, Saori; Otero, Jose M.; Koetter, Peter; Nielsen, Jens; Ebizuka, Yutaka; Kushiro, Tetsuo; Panagiotou, Gianni.

    In: P L o S One, Vol. 6, No. 3, 2011, p. e14763.

    Publication: Research - peer-reviewJournal article – Annual report year: 2011

  3. Published

    Machine learning competition in immunology – Prediction of HLA class I binding peptides. / Zhang, Guang Lan; Ansari, Hifzur Rahman; Bradley, Phil; Cawley, Gavin C.; Hertz, Tomer; Hu, Xihao; Jojic, Nebojsa; Kim, Yohan; Kohlbacher, Oliver; Lund, Ole; Lundegaard, Claus; Magaret, Craig A.; Nielsen, Morten; Papadopoulos, Harris; Raghava, G.P.S.; Tal, Vider-Shalit; Xue, Li C.; Yanover, Chen; Zhu, Shanfeng; Rock, Michael T.; Crowe, James E.; Panayiotou, Christos; Polycarpou, Marios M.; Duch, Włodzisław; Brusic, Vladimir.

    In: Journal of Immunological Methods, Vol. 374, No. 1-2, 2011, p. 1-4.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  4. Published

    Many Putative Endocrine Disruptors Inhibit Prostaglandin Synthesis. / Kristensen, David M.; Skalkam, Maria L.; Audouze, Karine Marie Laure; Lesné, Laurianne; Desdoits-Lethimonier, Christele; Frederiksen, Hanne; Brunak, Søren; Skakkebæk, Niels E.; Jégou, Bernard; Hansen, Jacob B.; Junker, Steffen; Leffers, Henrik.

    In: Environmental Health Perspectives, Vol. 119, No. 4, 2011, p. 534-541.

    Publication: Research - peer-reviewJournal article – Annual report year: 2010

  5. Published

    Maternal energy intake during lactation and gestation has an effect on leptin levels in the young and adult pups. / Ingvorsen, Camilla; Hellgren, Lars.

    2011. Abstract from Symposium for Biotech Research at DTU - Systems Biology, Lyngby, Denmark.

    Publication: ResearchConference abstract for conference – Annual report year: 2011

  6. Published

    Meta-Analysis of Heterogeneous Data Sources for Genome-Scale Identification of Risk Genes in Complex Phenotypes. / Pers, Tune Hannes; Hansen, Niclas Tue; Hansen, Kasper Lage; Koefoed, Pernille; Dworzynski, Piotr; Miller, Martin Lee; Flint, Tracey J.; Mellerup, Erling; Dam, Henrik; Andreassen, Ole A.; Djurovic, Srdjan; Melle, Ingrid; Børglum, Anders D.; Werge, Thomas; Purcell, Shaun; Ferreira, Manuel A.; Kouskoumvekaki, Irene; Workman, Christopher; Hansen, Torben; Mors, Ole; Brunak, Søren.

    In: Genetic Epidemiology, Vol. 35, No. 5, 2011, p. 318-332.

    Publication: Research - peer-reviewJournal article – Annual report year: 2011

  7. Published

    Metatranscriptomics of the human gut microbiome. / Sicheritz-Pontén, Thomas (Invited author).

    In: Genome Biology (Online Edition), Vol. 12 Suppl 1, 2011, p. I15.

    Publication: ResearchConference abstract in journal – Annual report year: 2011

  8. Published

    Microbial community structure of Arctic multiyear sea ice and surface seawater by 454 sequencing of the 16S RNA gene. / Bowman, Jeff S.; Rasmussen, Simon; Blom, Nikolaj; Deming, Jody W; Rysgaard, Søren; Sicheritz-Pontén, Thomas.

    In: I S M E Journal, 2011, p. 1-10.

    Publication: Research - peer-reviewJournal article – Annual report year: 2011

  9. Published

    MicroRNA-130a–mediated down-regulation of Smad4 contributes to reduced sensitivity to TGF-β1 stimulation in granulocytic precursors. / Häger, Mattias; Pedersen, Corinna Cavan; Larsen, Maria Torp; Andersen, Mette Klarskov; Hother, Christoffer; Grønbæk, Kirsten; Jarmer, Hanne Østergaard; Borregaard, Niels; Cowland, Jack Bernard.

    In: Blood, Vol. 118, No. 25, 2011, p. 6649-6659.

    Publication: Research - peer-reviewJournal article – Annual report year: 2011

  10. Published

    Mir-130a-Mediated Downregulation of SMAD4 Contributes to Reduced Sensitivity to TGE beta Stimulation in Promyelocytic Cells. / Hager, Mattias; Pedersen, Corinna Cavan; Larsen, Maria Torp; Andersen, Mette Klarskov; Hother, Christoffer; Gronbaek, Kirsten; Jarmer, Hanne; Borregaard, Niels; Cowland, Jack B.

    In: Blood, Vol. 118, No. 21, 2011, p. 1450-1451.

    Publication: Research - peer-reviewConference abstract in journal – Annual report year: 2012

  11. Published

    MULTIPRED2: A computational system for large-scale identification of peptides predicted to bind to HLA supertypes and alleles. / Zhang, Guang Lan; DeLuca, David S.; Keskin, Derin B.; Chitkushev, Lou; Zlateva, Tanya; Lund, Ole; Reinherz, Ellis L.; Brusic, Vladimir.

    In: Journal of Immunological Methods, Vol. 374, No. 1-2, 2011, p. 53-61.

    Publication: Research - peer-reviewJournal article – Annual report year: 2011

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