Center for Biological Sequence Analysis

  1. 2011
  2. Published

    Proteins Encoded in Genomic Regions Associated with Immune-Mediated Disease Physically Interact and Suggest Underlying Biology. / Rossin, Elizabeth J.; Hansen, Kasper Lage; Raychaudhuri, Soumya; Xavier, Ramnik J.; Tatar, Diana; Benita, Yair; Cotsapas, Chris; Daly, Mark J.

    In: P L o S Genetics, Vol. 7, No. 1, 2011, p. e1001273.

    Publication: Research - peer-reviewJournal article – Annual report year: 2011

  3. Published

    PSICQUIC and PSISCORE: accessing and scoring molecular interactions. / Aranda, Bruno; Blankenburg, Hagen; Kerrien, Samuel; Brinkman, Fiona S. L.; Ceol, Arnaud; Chautard, Emilie; Dana, Jose M.; De Las Rivas, Javier; Dumousseau, Marine; Galeota, Eugenia; Gaulton, Anna; Goll, Johannes; Hancock, Robert E. W.; Isserlin, Ruth; Jimenez, Rafael C.; Kerssemakers, Jules; Khadake, Jyoti; Lynn, David J.; Michaut, Magali; O'Kelly, Gavin; Ono, Keiichiro; Orchard, Sandra; Prieto, Carlos; Razick, Sabry; Rigina, Olga; Salwinski, Lukasz; Simonovic, Milan; Velankar, Sameer; Winter, Andrew; Wu, Guanming; Bader, Gary D.; Cesareni, Gianni; Donaldson, Ian M.; Eisenberg, David; Kleywegt, Gerard J.; Overington, John; Ricard-Blum, Sylvie; Tyers, Mike; Albrecht, Mario; Hermjakob, Henning.

    In: Nature Methods, Vol. 8, No. 7, 2011, p. 528-529.

    Publication: Research - peer-reviewJournal article – Annual report year: 2011

  4. Published

    Quantification of specific E. coli in gut mucosa from Crohn's disease patients. / Jensen, Stina Rikke; Fink, Lisbeth Nielsen; Struve, Carsten; Sternberg, Claus; Andersen, Jens Bo; Brynskov, Jørn; Nielsen, Ole Haagen; Pedersen, Susanne Brix.

    In: Journal of Microbiological Methods, Vol. 86, No. 1, 2011, p. 111-114.

    Publication: Research - peer-reviewJournal article – Annual report year: 2011

  5. Published

    Rational Discovery of T Helper Epitopes Specific for Bovine Infections with Mycobacterium avium ssp paratuberculosis. / Lundegaard, Claus; Aagaard, C.; Ussery, David; Andersen, P. L.; Jungersen, Gregers.

    In: Scandinavian Journal of Immunology, Vol. 73, No. 4, 2011, p. 392-393.

    Publication: Research - peer-reviewConference abstract in journal – Annual report year: 2011

  6. Published

    Recommendations for Mass Spectrometry Data Quality Metrics for Open Access Data (Corollary to the Amsterdam Principles). / Kinsinger, Christopher R.; Apffel, James; Baker, Mark; Bian, Xiaopeng; Borchers, Christoph H.; Bradshaw, Ralph; Brusniak, Mi-Youn; Chan, Daniel W.; Deutsch, Eric W.; Domon, Bruno; Gorman, Jeff; Grimm, Rudolf; Hancock, William; Hermjakob, Henning; Horn, David; Hunter, Christie; Kolar, Patrik; Kraus, Hans-Joachim; Langen, Hanno; Linding, Rune; Moritz, Robert L.; Omenn, Gilbert S.; Orlando, Ron; Pandey, Akhilesh; Ping, Peipei; Rahbar, Amir; Rivers, Robert; Seymour, Sean L.; Simpson, Richard J.; Slotta, Douglas; Smith, Richard D.; Stein, Stephen E.; Tabb, David L.; Tagle, Danilo; Yates, John R., III; Rodriguez, Henry.

    In: Molecular and Cellular Proteomics, Vol. 10, No. 12, 2011, p. O111.015446.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  7. Published

    Recommendations for Mass Spectrometry Data Quality Metrics for Open Access Data (Corollary to the Amsterdam Principles). / Kinsinger, Christopher R.; Apffel, James; Baker, Mark; Bian, Xiaopeng; Borchers, Christoph H.; Bradshaw, Ralph; Brusniak, Mi-Youn; Chan, Daniel W.; Deutsch, Eric W.; Domon, Bruno; Gorman, Jeff; Grimm, Rudolf; Hancock, William; Hermjakob, Henning; Horn, David; Hunter, Christie; Kolar, Patrik; Kraus, Hans-Joachim; Langen, Hanno; Linding, Rune; Moritz, Robert L.; Omenn, Gilbert S.; Orlando, Ron; Pandey, Akhilesh; Ping, Peipei; Rahbar, Amir; Rivers, Robert; Seymour, Sean L.; Simpson, Richard J.; Slotta, Douglas; Smith, Richard D.; Stein, Stephen E.; Tabb, David L.; Tagle, Danilo; Yates, John R., III; Rodriguez, Henry.

    In: Proteomics - Clinical Applications, Vol. 5, No. 11-12, 2011, p. 580-589.

    Publication: Research - peer-reviewJournal article – Annual report year: 2012

  8. Published

    Response to Comment on "Positive Selection of Tyrosine Loss in Metazoan Evolution". / Tan, Chris Soon Heng; Schoof, Erwin; Creixell, Pau; Pasculescu, Adrian; Lim, Wendell A.; Pawson, Tony; Bader, Gary D.; Linding, Rune.

    In: Science, Vol. 332, No. 6032, 2011, p. 917.

    Publication: Research - peer-reviewJournal article – Annual report year: 2011

  9. Published
  10. Published

    Role of Natural Killer and Dendritic Cell Crosstalk in Immunomodulation by Commensal Bacteria Probiotics. / Rizzello, Valeria; Bonaccorsi, Irene; Dongarra, Maria Luisa; Fink, Lisbeth Nielsen; Ferlazzo, Guido.

    In: Journal of Biomedicine and Biotechnology, Vol. 2011, 473097, 2011.

    Publication: Research - peer-reviewJournal article – Annual report year: 2011

  11. Published

    SignalP 4.0: discriminating signal peptides from transmembrane regions. / Petersen, Thomas Nordahl; Brunak, Søren; von Heijne, Gunnar; Nielsen, Henrik.

    In: Nature Methods, Vol. 8, No. 10, 2011, p. 785-786.

    Publication: Research - peer-reviewLetter – Annual report year: 2011

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