Center for Biological Sequence Analysis

  1. 2015
  2. Published

    Defining the microbial effluxome in the content of the host-microbiome interaction. / Ioannidis, Anastasios; Magana, Maria; Bologa, Cristian G.; Oprea, Tudor I.; Paulsen, Ian T.; Tegos, George P.

    In: Frontiers in Pharmacology, Vol. 6, 31, 2015.

    Publication: Research - peer-reviewComment/debate – Annual report year: 2015

  3. Published

    Determination of specificity influencing residues for key transcription factor families. / Patel, Ronak Y.; Garde, Christian; Stormo, Gary D.

    In: Quantitative Biology, Vol. 3, No. 3, 2015, p. 115-123.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  4. Published

    Developing a Molecular Roadmap of Drug-Food Interactions. / Jensen, Kasper; Ni, Yueqiong; Panagiotou, Gianni; Kouskoumvekaki, Irene.

    In: P L o S Computational Biology (Online), Vol. 11, No. 2, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  5. Published

    Discovery, genotyping and characterization of structural variation and novel sequence at single nucleotide resolution from de novo genome assemblies on a population scale. / Liu, Siyang; Huang, Shujia; Rao, Junhua; Ye, Weijian; Schierup, Mikkel H.; Villesen, Palle ; Xu, Xun; Li, Ning; Kristiansen, Karsten; Sørensen, Thorkild I. A.; Hansen, Torben; Pedersen, Oluf; Brunak, Søren; Gupta, Ramneek; Rasmussen, Simon; Lund, Ole; Bolund, Lars; Børglum, Anders D.; Eiberg, Hans; Nørgaard Flindt, Esben; Xu, Ruiqi; Sun, Jihua; Liu, Hao ; Jiang, Hui; Wang, Ou ; Cheng, Xiaofang ; Demontis, Ditte ; Besenbacher, Søren; Mailund, Thomas; Friborg, Rune M. ; Pedersen, Christian N. S.; Liu, Siyang; Chang, Yuqi; Li, Shengting; Guo, Xiaosen; Cao, Hongzhi; Ye, Chen; Maretty, Lasse; Andreas Sibbesen, Jonas; Albrechtsen, Anders; Bork-Jensen, Jette; Theil Have, Christian; Gonzalez-Izarzugaza, Jose Maria; Belling, Kirstine González-Izarzugaza; Yadav, Rachita; Grove, Jakob; Dam-Als, Thomas; Lescai, Francesco; Krogh, Anders; Wang, Jun.

    In: GigaScience, Vol. 4, No. 64, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  6. Published

    Disentangling type 2 diabetes and metformin treatment signatures in the human gut microbiota. / Forslund, Kristoffer; Hildebrand, Falk ; Nielsen, Trine N.; Falony, Gwen; Le Chatelier, Emmanuelle; Sunagawa, Shinichi; Prifti, Edi; Vieira-Silva, Sara ; Gudmundsdottir, Valborg; Pedersen, Helle Krogh; Arumugam, Manimozhiyan; Kristiansen, Karsten; Yvonne Voig, Anita; Vestergaard, Henrik; Hercog, Rajna; Costea, Paul Igor; Kultima, Jens Roat; Li, Junhua; Jørgensen, Torben; Levenez, Florence; Dore, Joël; Nielsen, Henrik Bjørn; Brunak, Søren; Raes, Jeroen; Hansen, Torben; Wang, Jun; Ehrlich, S. Dusko; Bork, Peer; Pedersen, Oluf.

    In: Nature, Vol. 528, No. 7581, 2015, p. 262-266.

    Publication: Research - peer-reviewLetter – Annual report year: 2015

  7. Published

    Distinct inflammatory and cytopathic characteristics of Escherichia coli isolates from inflammatory bowel disease patients. / Jensen, Stina Rikke; Mirsepasi-Lauridsen, Hengameh Chloé; Thysen, Anna Hammerich; Brynskov, Jørn; Krogfelt, Karen Angeliki; Petersen, Andreas Munk; Pedersen, Anders Elm; Brix, Susanne.

    In: International Journal of Medical Microbiology, Vol. 305, No. 8, 2015, p. 925-936.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  8. Published

    Distinct summer and winter bacterial communities in the active layer of Svalbard permafrost revealed by DNA- and RNA-based analyses. / Schostag, Morten; Stibal, Marek; Jacobsen, Carsten S.; Bælum, Jacob; Tas, Neslihan; Elberling, Bo; Jansson, Janet K.; Semenchuk, Philipp; Prieme, Anders.

    In: Frontiers in Microbiology, Vol. 6, 399, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  9. Published

    Dual Action of Lysophosphatidate-Functionalised Titanium: Interactions with Human (MG63) Osteoblasts and Methicillin Resistant Staphylococcus aureus. / Skindersø, Mette Elena; Krogfelt, Karen Angeliki; Blom, Ashley; Jiang, Guowei; Prestwich, Glenn D; Mansell, Jason Peter.

    In: P L o S One, Vol. 10, No. 11, e0143509, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  10. Published

    Early Divergent Strains of Yersinia pestis in Eurasia 5,000 Years Ago. / Rasmussen, Simon; Allentoft, Morten Erik; Nielsen, Kasper; Orlando, Ludovic; Sikora, Martin; Sjögren, Karl-Göran; Pedersen, Anders Gorm; Schubert, Mikkel; Van Dam, Alex; Kapel, Christian Moliin Outzen; Nielsen, Henrik Bjørn; Brunak, Søren; Avetisyan, Pavel; Epimakhov, Andrey; Khalyapin, Mikhail Viktorovich; Gnuni, Artak; Kriiska, Aivar; Lasak, Irena; Metspalu, Mait; Moiseyev, Vyacheslav; Gromov, Andrei; Pokutta, Dalia; Saag, Lehti; Varul, Liivi; Yepiskoposyan, Levon; Sicheritz-Pontén, Thomas; Foley, Robert A; Lahr, Marta Mirazón; Nielsen, Rasmus; Kristiansen, Kristian; Willerslev, Eske.

    In: Cell, Vol. 163, No. 3, 2015, p. 571-582.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  11. Published

    Ebolavirus comparative genomics. / Jun, Se-Ran; Leuze, Michael R.; Nookaew, Intawat; Uberbacher, Edward C.; Land, Miriam; Zhang, Qian; Wanchai, Visanu; Chai, Juanjuan; Nielsen, Morten; Trolle, Thomas; Lund, Ole; Buzard, Gregory S.; Pedersen, Thomas Dybdal; Wassenaar, Trudy M.; Ussery, David W.

    In: F E M S Microbiology Reviews, Vol. 479, No. 1, fuv031, 2015, p. 764-778.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

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