Center for Biological Sequence Analysis

  1. 2016
  2. Published
  3. Published

    How compelling are the data for Epstein-Barr virus being a trigger for systemic lupus and other autoimmune diseases? / Draborg, Anette; Gonzalez-Izarzugaza, Jose Maria; Houen, Gunnar.

    In: Current Opinion in Rheumatology, Vol. 28, No. 4, 2016, p. 398-404.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  4. Published

    Human gut microbes impact host serum metabolome and insulin sensitivity. / Pedersen, Helle Krogh; Gudmundsdottir, Valborg; Nielsen, Henrik Bjørn; Hyotylainen, Tuulia; Nielsen, Trine; Jensen, Benjamin A. H.; Forslund, Kristoffer; Hildebrand, Falk; Prifti, Edi; Falony, Gwen; Le Chatelier, Emmanuelle; Levenez, Florence; Dore, Joel; Mattila, Ismo; Plichta, Damian Rafal; Poho, Paivi; Hellgren, Lars; Arumugam, Manimozhiyan; Sunagawa, Shinichi; Vieira-Silva, Sara; Jørgensen, Torben; Holm, Jacob Bak; Trost, Kajetan; Kristiansen, Karsten; Pedersen, Susanne Brix; Raes, Jeroen; Wang, Jun; Hansen, Torben; Bork, Peer; Brunak, Søren; Oresic, Matej; Ehrlich, S. Dusko; Pedersen, Oluf.

    In: Nature, Vol. 535, No. 7612, 2016, p. 376-381.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  5. Published

    Identification of Known and Novel Recurrent Viral Sequences in Data from Multiple Patients and Multiple Cancers. / Friis-Nielsen, Jens; Kjartansdóttir, Kristín Rós ; Mollerup, Sarah ; Asplund, Maria ; Mourier, Tobias ; Holm Jensen, Randi ; Arn Hansen, Thomas; Rey-Iglesia, Alba ; Vinner, Lasse ; Fridholm, Helena ; Nielsen, Lars Peter; Willerslev, Eske; Sicheritz-Pontén, Thomas; Lund, Ole; Hansen, Anders Johannes ; Gonzalez-Izarzugaza, Jose Maria; Brunak, Søren.

    In: Viruses, Vol. 8, No. 53, 2016.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  6. Published

    Immunogenicity of HLA Class I and II Double Restricted Influenza A-Derived Peptides. / Pedersen, Sara Ram; Christensen, Jan Pravsgaard; Buus, Søren; Rasmussen, Michael; Korsholm, Karen Smith; Nielsen, Morten; Claesson, Mogens Helweg.

    In: P L o S One, Vol. 11, No. 1, e0145629, 2016.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  7. Published

    Impact Of Mutation-derived Antigens In Immune Recognition Of Hematological Malignancies, Specifically Myeloid Dysplastic Syndromes (MDS). / Saini, Sunil Kumar; Dorfmüller, S.; Bjerregaard, Anne-Mette; Bentzen, Amalie Kai; Eklund, Aron Charles; Medyouf, H.; Hadrup, Sine Reker.

    In: Haematologica, Vol. 101, No. S1, P237, 2016, p. 66-66.

    Publication: Research - peer-reviewConference abstract in journal – Annual report year: 2016

  8. Published

    Improved pan-specific prediction of MHC class I peptide binding using a novel receptor clustering data partitioning strategy. / Mattsson, Andreas Holm; Kringelum, Jens Vindahl; Garde, C.; Nielsen, Morten.

    In: Hla, Vol. 88, No. 6, 2016, p. 287–292.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  9. Published

    Integration of Known DNA, RNA and Protein Biomarkers Provides Prediction of Anti-TNF Response in Rheumatoid Arthritis : results from the COMBINE study. / Folkersen, Lasse; Brynedal, Boel; Marcela Diaz-Gallo, Lina; Ramsköld, Daniel; Shchetynsky, Klementy; Westerlind, Helga; Sundström, Yvonne; Schepis, Danika; Hensvold, Aase; Vivar, Nancy; Eloranta, Maija-Leena; Rönnblom, Lars; Brunak, Søren; Malmström, Vivianne; Catrina, Anca; G. W. Moerch, Ulrik; Klareskog, Lars; Padyukov, Leonid; Berg, Louise.

    In: Molecular Medicine, Vol. 22, 2016, p. 322-328.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  10. Published

    Integrative analysis of miRNA and gene expression reveals regulatory networks in tamoxifen-resistant breast cancer. / Joshi, Tejal; Elias, Daniel; Stenvang, Jan; Alves, Carla L.; Teng, Fei; Lyng, Maria B.; Lykkesfeldt, Anne E.; Brünner, Nils; Wang, Jun; Gupta, Ramneek; Workman, Christopher; Ditzel, Henrik J.

    In: OncoTarget, Vol. 7, No. 35, 2016, p. 57239-57253.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  11. Published

    Investigating comammox Nitrospira in rapid sand filters via metagenomics and single-cell genomics. / Palomo, Alejandro; Fowler, Jane; Gülay, Arda; Rasmussen, Simon; Schramm, Andreas; Sicheritz-Pontén, Thomas; Smets, Barth F.

    2016. Abstract from MEWE and biofilms IWA specialist conference, Copenhagen, Denmark.

    Publication: Research - peer-reviewConference abstract for conference – Annual report year: 2016

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