Center for Biological Sequence Analysis

  1. 2016
  2. Published

    A robust prognostic gene expression signature for early stage lung adenocarcinoma. / Krzystanek, Marcin; Moldvay, Judit; Szüts, David; Szallasi, Zoltan Imre; Eklund, Aron Charles.

    In: Biomarker Research, Vol. 4, No. 4, 2016.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  3. Published

    Asparaginase-associated pancreatitis: a study on phenotype and genotype in the NOPHO ALL2008 protocol. / Wolthers, B. O.; Frandsen, Thomas L.; Abrahamsson, Jonas; Albertsen, B. K.; Helt, L. R.; Heyman, Mats; Jonsson, Olafur G.; Korgvee, L. T.; Lund, B.; Raja, R. A.; Rasmussen, K. K.; Taskinen, M.; Tulstrup, M.; Vaitkeviciene, G. E.; Yadav, Rachita; Gupta, R.; Schmiegelow, K.

    In: Leukemia, Vol. 31, No. 2, 2016, p. 325-332.

    Publication: Research - peer-reviewJournal article – Annual report year: 2017

  4. Published

    Automated Clustering Analysis of Immunoglobulin Sequences in Chronic Lymphocytic Leukemia Based on 3D Structural Descriptors. / Marcatili, Paolo; Mochament, Konstantinos; Agathangelidis, Andreas; Moschonas, Panagiotis; Sutton, Lesley-Ann; Yan, Xiao-Jie; Bikos, Vasilis; Vardi, Anna; Chailyan, Anna ; Stavroyianni, Niki ; Jensen, Kamilla Kjærgaard; Anagnostopoulos, Achilles; Chiorazzi, Nicholas; Belessi, Chrysoula ; Rosenquist, Richard; Ghia, Paolo ; Stamatopoulos, Kostas ; Hadzidimitriou, Anastasia ; Tzovaras, Dimitrios .

    In: Blood, Vol. 128, No. 22, 2016, p. 4365.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  5. Published

    BCL9L Dysfunction Impairs Caspase-2 Expression Permitting Aneuploidy Tolerance in Colorectal Cancer. / López-García, Carlos; Sansregret, Laurent; Domingo, Enric; McGranahan, Nicholas; Hobor, Sebastijan; Birkbak, Nicolai Juul; Horswell, Stuart; Grönroos, Eva; Favero, Francesco; Rowan, Andrew J.; Matthews, Nicholas; Begum, Sharmin; Phillimore, Benjamin; Burrell, Rebecca; Oukrif, Dahmane; Spencer-Dene, Bradley; Kovac, Michal; Stamp, Gordon; Stewart, Aengus; Danielsen, Havard; Novelli, Marco; Tomlinson, Ian; Swanton, Charles.

    In: Cancer Cell, Vol. 31, No. 1, 2016, p. 79-93.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  6. Published

    Benchmarking of methods for identification of antimicrobial resistance genes in bacterial whole genome data. / Clausen, Philip T. L. C.; Zankari, Ea; Aarestrup, Frank Møller; Lund, Ole.

    In: Journal of Antimicrobial Chemotherapy, Vol. 71, No. 9, 2016, p. 2484-2488.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  7. Published

    Benchtop Whole-Genome Sequencing for Identification of Nosocomial Outbreaks in Tanzania. / Sonda, Tolbert; Kumburu, Happiness; Zwetselaar, Marco van; Ahrenfeldt, Johanne; Alifrangis, Michael; Lund, Ole; Kibiki, Gibson; Aarestrup, Frank Møller.

    In: Infection Control & Hospital Epidemiology, Vol. 37, No. 5, 2016, p. 622-623.

    Publication: Research - peer-reviewComment/debate – Annual report year: 2016

  8. Published

    Capturing One of the Human Gut Microbiome's Most Wanted : Reconstructing the Genome of a Novel Butyrate-Producing, Clostridia! Scavenger from Metagenomic Sequence Data. / Jeraldo, Patricio; Hernandez, Alvaro; Nielsen, Henrik Bjørn; Chen, Xianfeng; White, Bryan A.; Goldenfeld, Nigel; Nelson, Heidi; Alhquist, David; Boardman, Lisa; Chia, Nicholas.

    In: Frontiers in Microbiology, Vol. 7, 783, 2016.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  9. Published

    CD4+ T cells with an activated and exhausted phenotype distinguish immunodeficiency during aviremic HIV-2 infection. / Buggert, Marcus; Frederiksen, Juliet Wairimu; Lund, Ole; Betts, Michael R.; Biague, Antonio; Nielsen, Morten; Tauriainen, Johanna; Norrgren, Hans; Medstrand, Patrik; Karlsson, Annika C.; Jansson, Marianne.

    In: AIDS, Vol. 30, No. 16, 2016, p. 2415-2426.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  10. Published

    Characterisation of Non-Histone Lysine Acetyltransferases and Deacetylases in Probiotics. / Olesen, Sita Vaag; Hägglund, Per; Svensson, Birte.

    In: Protein Science, Vol. 25, No. S1, 2016, p. 138.

    Publication: Research - peer-reviewConference abstract in journal – Annual report year: 2016

  11. Published

    Chemosensory perception, symptoms and autonomic responses during chemical exposure in multiple chemical sensitivity. / Andersson, Linus; Claeson, Anna Sara; Dantoft, Thomas Meinertz; Skovbjerg, Sine; Lind, Nina; Nordin, Steven.

    In: International Archives of Occupational and Environmental Health, Vol. 89, No. 1, 2016, p. 79-88.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

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