Center for Biological Sequence Analysis

  1. 2016
  2. Published

    Picornavirus-Induced Airway Mucosa Immune Profile in Asymptomatic Neonates. / Wolsk, Helene M.; Følsgaard, Nilofar V.; Birch, Sune; Pedersen, Susanne Brix; Hansel, Trevor T.; Johnston, Sebastian L.; Kebadze, Tatiana; Chawes, Bo L.; Bønnelykke, Klaus; Bisgaard, Hans Flinker.

    In: Journal of Infectious Diseases, Vol. 213, No. 8, 2016, p. 1262-1270.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  3. E-pub ahead of print

    Predicting Subcellular Localization of Proteins by Bioinformatic Algorithms. / Nielsen, Henrik.

    Protein Export in Gram-positive Bacteria. ed. / F. Bagnoli; R. Rappuoli. 2016. (Current Topics in Microbiology and Immunology).

    Publication: Research - peer-reviewBook chapter – Annual report year: 2016

  4. Published

    Quantification of oxidative stress phenotypes based on high-throughput growth profiling of protein kinase and phosphatase knockouts. / Altıntaş, Ali; Martini, Jacopo; Mortensen, Uffe Hasbro; Workman, Christopher T.

    In: Fems Yeast Research, Vol. 16, No. 1, fov101, 2016.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  5. Published

    Season of birth shapes neonatal immune function. / Thysen, Anna Hammerich; Rasmussen, Morten Arendt; Kreiner-Møller, Eskil; Larsen, Jeppe Madura; Følsgaard, Nilofar Vahman; Bønnelykke, Klaus; Stokholm, Jakob; Bisgaard, Hans Flinker; Pedersen, Susanne Brix.

    In: Journal of Allergy and Clinical Immunology, Vol. 137, No. 4, 2016, p. 1238-1246.e13.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  6. Published

    Sequence diversity between class I MHC loci of African native and introduced Bos taurus cattle in Theileria parva endemic regions : in silico peptide binding prediction identifies distinct functional clusters. / Obara, Isaiah; Nielsen, Morten; Jeschek, Marie; Nijhof, Ard; Mazzoni, Camila J.; Svitek, Nicholas; Steinaa, Lucilla; Awino, Elias; Olds, Cassandra; Jabbar, Ahmed; Clausen, Peter Henning; Bishop, Richard P.

    In: Immunogenetics, Vol. 68, No. 5, 2016, p. 339-352.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  7. Published

    Siblings Promote a Type 1/Type 17-oriented immune response in the airways of asymptomatic neonates. / Wolsk, Helene Mygind; Chawes, Bo L.; Følsgaard, Nilofar V.; Rasmussen, Morten A.; Pedersen, Susanne Brix; Bisgaard, Hans Flinker.

    In: Allergy, Vol. 71, No. 6, 2016, p. 820-828.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  8. Published

    Species-independent identification of known and novel recurrent genomic entities in multiple cancer patients. / Friis-Nielsen, Jens; Gonzalez-Izarzugaza, Jose Maria; Brunak, Søren.

    In: Human Genomics (Online), Vol. 10, No. Suppl. 1, P16, 2016.

    Publication: Research - peer-reviewConference abstract in journal – Annual report year: 2016

  9. Published

    Strategies for structuring interdisciplinary education in Systems Biology : an European perspective. / Cvijovic, Marija; Höfer, Thomas; Aćimović, Jure; Alberghina, Lilia; Almaas, Eivind; Besozzi, Daniela; Blomberg, Anders; Bretschneider, Till; Cascante, Marta; Collin, Olivier; de Atauri, Pedro; Depner, Cornelia; Dickinson, Robert; Dobrzynski, Maciej; Fleck, Christian; Garcia-Ojalvo, Jordi; Gonze, Didier; Hahn, Jens; Marie Hess, Heide; Hollmann, Susanne; Krantz, Marcus; Kummer, Ursula; Lundh, Torbjörn; Martial, Gifta; Martins dos Santos, Vítor; Mauer-Oberthür, Angela; Regierer, Babette; Skene, Barbara; Stalidzans, Egils; Stelling, Jörg; Teusink, Bas; Workman, Christopher; Hohmann, Stefan.

    In: Npj Systems Biology and Applications, Vol. 2, 16011, 2016.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  10. Published

    Susceptibility to Lower Respiratory Infections in Childhood is Associated with Perturbation of the Cytokine Response to Pathogenic Airway Bacteria. / Vissing, Nadja Hawwa; Larsen, Jeppe Madura; Rasmussen, Morten Arendt; Chawes, Bo Lund Krogsgaard; Thysen, Anna Hammerich; Bønnelykke, Klaus; Pedersen, Susanne Brix; Bisgaard, Hans Flinker.

    In: Pediatric Infectious Disease Journal, Vol. 35, No. 5, 2016, p. 561-566.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  11. Published

    T-cell recognition is shaped by epitope sequence conservation in the host proteome and microbiome. / Bresciani, Anne Gøther; Paul, Sinu; Schommer, Nina; Dillon, Myles B.; Bancroft, Tara; Greenbaum, Jason; Sette, Alessandro; Nielsen, Morten; Peters, Bjoern.

    In: Immunology, Vol. 148, No. 1, 2016, p. 34-39.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

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