Center for Biological Sequence Analysis

  1. 2016
  2. Published

    Gapped sequence alignment using artificial neural networks: application to the MHC class I system. / Andreatta, Massimo; Nielsen, Morten.

    In: Bioinformatics, Vol. 32, No. 4, btv639, 2016, p. 511-517.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  3. Published

    Genome-wide association analysis of self-reported events in 6135 individuals and 252 827 controls identifies 8 loci associated with thrombosis. / Hinds, David A; Buil, Alfonso; Ziemek, Daniel; Martinez-Perez, Angel; Malik, Rainer; Folkersen, Lasse; Germain, Marine; Mälarstig, Anders; Brown, Andrew; Soria, Jose Manuel; Dichgans, Martin; Bing, Nan; Franco-Cereceda, Anders; Souto, Juan Carlos; Dermitzakis, Emmanouil T.; Hamsten, Anders; Worrall, Bradford B.; Tung, Joyce Y.; Sabater-Lleal, Maria.

    In: Human Molecular Genetics, Vol. 25, No. 9, 2016, p. 1867-1874.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  4. Published

    Global Genomic Epidemiology of Salmonella enterica Serovar Typhimurium DT104. / Leekitcharoenphon, Pimlapas; Hendriksen, Rene S.; Le Hello, Simon; Weill, François-Xavier; Baggesen, Dorte Lau; Jun, Se-Ran; Ussery, David; Lund, Ole; Crook, Derrick W; Wilson, Daniel J; Aarestrup, Frank Møller.

    In: Applied and Environmental Microbiology, Vol. 82, No. 8, 2016, p. 2516-2526.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  5. E-pub ahead of print

    High breast milk IL-1β level is associated with reduced risk of childhood eczema. / Jepsen, A. A.; Chawes, B. L.; Carson, C. G.; Schoos, A.-M. M.; Thysen, A. H.; Waage, J.; Pedersen, Susanne Brix; Bisgaard, H.

    In: Clinical and Experimental Allergy, 2016.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  6. Published

    Highlights from the eleventh ISCB Student Council Symposium 2015. / Wilkins, Katie; Hassan, Mehedi; Francescatto, Margherita; Jespersen, Jakob Berg; Gonzalo Parra, R.; Cuypers, Bart; DeBlasio, Dan; Junge, Alexander; Jigisha, Anupama; Rahman, Farzana.

    In: B M C Bioinformatics, Vol. 17, No. Suppl. 3, 2016, p. 203-205.

    Publication: Research - peer-reviewConference abstract in journal – Annual report year: 2016

  7. Published

    HostPhinder: A Phage Host Prediction Tool. / Villarroel, Julia; Kleinheinz, Kortine Annina; Jurtz, Vanessa Isabell; Zschach, Henrike; Lund, Ole; Nielsen, Morten; Larsen, Mette Voldby.

    In: Viruses, Vol. 8, No. 5, 116, 2016.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  8. E-pub ahead of print

    How compelling are the data for Epstein-Barr virus being a trigger for systemic lupus and other autoimmune diseases? / Draborg, Anette; Gonzalez-Izarzugaza, Jose Maria; Houen, Gunnar.

    In: Current Opinion in Rheumatology, 2016.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  9. Published

    Human gut microbes impact host serum metabolome and insulin sensitivity. / Pedersen, Helle Krogh; Gudmundsdottir, Valborg; Nielsen, Henrik Bjørn; Hyotylainen, Tuulia; Nielsen, Trine; Jensen, Benjamin A. H.; Forslund, Kristoffer; Hildebrand, Falk; Prifti, Edi; Falony, Gwen; Le Chatelier, Emmanuelle; Levenez, Florence; Dore, Joel; Mattila, Ismo; Plichta, Damian Rafal; Poho, Paivi; Hellgren, Lars; Arumugam, Manimozhiyan; Sunagawa, Shinichi; Vieira-Silva, Sara; Jørgensen, Torben; Holm, Jacob Bak; Trost, Kajetan; Kristiansen, Karsten; Pedersen, Susanne Brix; Raes, Jeroen; Wang, Jun; Hansen, Torben; Bork, Peer; Brunak, Søren; Oresic, Matej; Ehrlich, S. Dusko; Pedersen, Oluf.

    In: Nature, Vol. 535, No. 7612, 2016, p. 376-381.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  10. Published

    Identification of Known and Novel Recurrent Viral Sequences in Data from Multiple Patients and Multiple Cancers. / Friis-Nielsen, Jens; Kjartansdóttir, Kristín Rós ; Mollerup, Sarah ; Asplund, Maria ; Mourier, Tobias ; Holm Jensen, Randi ; Arn Hansen, Thomas; Rey-Iglesia, Alba ; Vinner, Lasse ; Fridholm, Helena ; Nielsen, Lars Peter; Willerslev, Eske; Sicheritz-Pontén, Thomas; Lund, Ole; Hansen, Anders Johannes ; Gonzalez-Izarzugaza, Jose Maria; Brunak, Søren.

    In: Viruses, Vol. 8, No. 53, 2016.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  11. Published

    Immunogenicity of HLA Class I and II Double Restricted Influenza A-Derived Peptides. / Pedersen, Sara Ram; Christensen, Jan Pravsgaard; Buus, Søren; Rasmussen, Michael; Korsholm, Karen Smith; Nielsen, Morten; Claesson, Mogens Helweg.

    In: P L o S One, Vol. 11, No. 1, e0145629, 2016.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

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