Center for Biological Sequence Analysis

  1. 2016
  2. Published

    Benchmarking of methods for identification of antimicrobial resistance genes in bacterial whole genome data. / Clausen, Philip T. L. C.; Zankari, Ea; Aarestrup, Frank Møller; Lund, Ole.

    In: Journal of Antimicrobial Chemotherapy, Vol. 71, No. 9, 2016, p. 2484-2488.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  3. Published

    Benchtop Whole-Genome Sequencing for Identification of Nosocomial Outbreaks in Tanzania. / Sonda, Tolbert; Kumburu, Happiness; Zwetselaar, Marco van; Ahrenfeldt, Johanne; Alifrangis, Michael; Lund, Ole; Kibiki, Gibson; Aarestrup, Frank Møller.

    In: Infection Control & Hospital Epidemiology, Vol. 37, No. 5, 2016, p. 622-623.

    Publication: Research - peer-reviewComment/debate – Annual report year: 2016

  4. Published

    Capturing One of the Human Gut Microbiome's Most Wanted : Reconstructing the Genome of a Novel Butyrate-Producing, Clostridia! Scavenger from Metagenomic Sequence Data. / Jeraldo, Patricio; Hernandez, Alvaro; Nielsen, Henrik Bjørn; Chen, Xianfeng; White, Bryan A.; Goldenfeld, Nigel; Nelson, Heidi; Alhquist, David; Boardman, Lisa; Chia, Nicholas.

    In: Frontiers in Microbiology, Vol. 7, 783, 2016.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  5. Published

    CD4+ T cells with an activated and exhausted phenotype distinguish immunodeficiency during aviremic HIV-2 infection. / Buggert, Marcus; Frederiksen, Juliet Wairimu; Lund, Ole; Betts, Michael R.; Biague, Antonio; Nielsen, Morten; Tauriainen, Johanna; Norrgren, Hans; Medstrand, Patrik; Karlsson, Annika C.; Jansson, Marianne.

    In: AIDS, Vol. 30, No. 16, 2016, p. 2415-2426.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  6. Published

    Characterisation of Non-Histone Lysine Acetyltransferases and Deacetylases in Probiotics. / Olesen, Sita Vaag; Hägglund, Per; Svensson, Birte.

    In: Protein Science, Vol. 25, No. S1, 2016, p. 138.

    Publication: Research - peer-reviewConference abstract in journal – Annual report year: 2016

  7. Published

    Chemosensory perception, symptoms and autonomic responses during chemical exposure in multiple chemical sensitivity. / Andersson, Linus; Claeson, Anna Sara; Dantoft, Thomas Meinertz; Skovbjerg, Sine; Lind, Nina; Nordin, Steven.

    In: International Archives of Occupational and Environmental Health, Vol. 89, No. 1, 2016, p. 79-88.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  8. Published

    ChemProt-3.0: a global chemical biology diseases mapping. / Kringelum, Jens Vindahl; Kjærulff, Sonny Kim; Brunak, Søren; Lund, Ole; Oprea, Tudor I.; Taboureau, Olivier .

    In: Database, Vol. 2016, bav123, 2016.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  9. Published

    Colonic transit time is related to bacterial metabolism and mucosal turnover in the gut. / Roager, Henrik Munch; Hansen, Lea Benedicte Skov; Bahl, Martin Iain; Frandsen, Henrik Lauritz; Carvalho, Vera; Gøbel, Rikke J; Dalgaard, Marlene Danner; Plichta, Damian Rafal; Sparholt, Morten H; Vestergaard, Henrik; Hansen, Torben; Sicheritz-Pontén, Thomas; Nielsen, Henrik Bjørn; Pedersen, Oluf; Lauritzen, Lotte; Kristensen, Mette; Gupta, Ramneek; Licht, Tine Rask.

    In: Nature Microbiology, Vol. 1, No. 9, 16093, 2016.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  10. Published

    Colonic transit time is related to bacterial metabolism and mucosal turnover in the human gut. / Roager, Henrik Munch; Hansen, Lea Benedicte Skov; Bahl, Martin Iain; Frandsen, Henrik Lauritz; Carvalho, Vera; Gøbel, Rikke J.; Dalgaard, Marlene Danner; Plichta, Damian Rafal; Sparholt, Morten; Vestergaard, Henrik; Hansen, Torben; Sicheritz-Pontén, Thomas; Nielsen, Henrik Bjørn; Pedersen, Oluf; Lauritzen, Lotte; Kristensen, Mette; Licht, Tine Rask.

    2016. Abstract from 13th NuGOweek PHENOTYPES AND PREVENTION - THE INTERPLAY OF GENES, LIFE-STYLE FACTORS AND GUT ENVIRONMENT, Copenhagen, Denmark.

    Publication: Research - peer-reviewConference abstract for conference – Annual report year: 2016

  11. Published

    Colonic transit time relates to bacterial metabolism and mucosal turnover in the human gut. / Roager, Henrik Munch; Hansen, Lea Benedicte Skov; Bahl, Martin Iain; Frandsen, Henrik Lauritz; Carvalho, Vera; Gøbel, Rikke J.; Dalgaard, Marlene Danner; Sparholt, Morten; Vestergaard, Henrik; Hansen, Torben; Sicheritz-Ponten, Thomas; Nielsen, Henrik Bjørn; Pedersen, Oluf; Lauritzen, Lotte; Kristensen, Mette; Gupta, Ramneek; Licht, Tine Rask.

    2016. Abstract from 10th Joint Symposium INRA-Rowett 2016: Gut Microbiology, Clermont-Ferrand, France.

    Publication: Research - peer-reviewConference abstract for conference – Annual report year: 2016

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