Center for Biological Sequence Analysis

  1. 2016
  2. Published

    Propionibacterium acnes: disease-causing agent or common contaminant? Detection in diverse patient samples by next generation sequencing. / Mollerup, Sarah; Friis-Nielsen, Jens; Vinner, Lasse; Richter, Stine Raith; Fridholm, Helena; Herrera, Jose Romero; Lund, Ole; Brunak, Søren; Gonzalez-Izarzugaza, Jose Maria; Mourier, Tobias; Nielsen, Lars Peter; Hansen, Anders Johannes.

    In: Journal of Clinical Microbiology, Vol. 54, No. 4, 2016, p. 980-987.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  3. Published

    Staphylococcus aureus Transcriptome Architecture : From Laboratory to Infection-Mimicking Conditions. / Mäder, Ulrike; Nicolas, Pierre; Depke, Maren; Pané-Farré, Jan; Debarbouille, Michel; van der Kooi-Pol, Magdalena M; Guérin, Cyprien; Dérozier, Sandra; Hiron, Aurelia; Jarmer, Hanne Østergaard; Leduc, Aurélie; Michalik, Stephan; Reilman, Ewoud; Schaffer, Marc; Schmidt, Frank; Bessières, Philippe; Noirot, Philippe; Hecker, Michael; Msadek, Tarek; Völker, Uwe; van Dijl, Jan Maarten.

    In: P L o S Genetics, Vol. 12, No. 4, e1005962, 2016.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  4. Published

    Toxoplasma gondii peptide ligands open the gate of the HLA class I binding groove. / McMurtrey, Curtis; Trolle, Thomas; Sansom, Tiffany; Remesh, Soumya G.; Kaever, Thomas; Bardet, Wilfried; Jackson, Kenneth; McLeod, Rima; Sette, Alessandro; Nielsen, Morten; Zajonc, Dirk M.; Blader, Ira J.; Peters, Bjoern; Hildebrand, William.

    In: eLife, Vol. 5, e12556, 2016.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  5. Published

    KinMutRF: a random forest classifier of sequence variants in the human protein kinase superfamily. / Pons, Tirso; Vazquez, Miguel; Matey-Hernandez, María Luisa; Brunak, Søren; Valencia, Alfonso; Gonzalez-Izarzugaza, Jose Maria.

    In: BMC Genomics, Vol. 17, No. Suppl. 2, 396, 2016.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  6. Published

    LOX1 inhibition with small molecules. / Gousiadou, Chryssoula; Kouskoumvekaki, Irene.

    In: Journal of Molecular Graphics and Modelling, Vol. 63, 2016, p. 99-109.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  7. Published

    Maximum-Entropy Models of Sequenced Immune Repertoires Predict Antigen-Antibody Affinity. / Asti, Lorenzo; Uguzzoni, Guido; Marcatili, Paolo; Pagnani, Andrea.

    In: P L o S Computational Biology (Online), Vol. 12, No. 4, e1004870, 2016.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  8. Published

    MECP2 Is a Frequently Amplified Oncogene with a Novel Epigenetic Mechanism That Mimics the Role of Activated RAS in Malignancy. / Neupane, Manish; Clark, Allison P.; Landini, Serena; Birkbak, Nicolai Juul; Eklund, Aron Charles; Lim, Elgene; Culhane, Aedin C.; Barry, William T.; Schumacher, Steven E.; Beroukhim, Rameen; Szallasi, Zoltan Imre; Vidal, Marc; Hill, David E.; Silver, Daniel P.

    In: Cancer Discovery, Vol. 6, No. 1, 2016, p. 45-58.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  9. E-pub ahead of print
  10. Published

    MicroRNA 486-3P as a stability marker in acute coronary syndrome. / Wei, Tianling; Folkersen, Lasse; Ehrenborg, Ewa; Gabrielsen, Anders.

    In: Bioscience Reports, Vol. 36, No. 3, e00351, 2016.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  11. E-pub ahead of print

    Model studies of lipid flip-flop in membranes. / Parisio, Giulia; Ferrarini, Alberta; Sperotto, Maria Maddalena.

    In: International Journal of Advances in Engineering Sciences and Applied Mathematics, 2016.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

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