Center for Biological Sequence Analysis

  1. 2015
  2. Published

    Molecular Analysis of Asymptomatic Bacteriuria Escherichia coli Strain VR50 Reveals Adaptation to the Urinary Tract by Gene Acquisition. / Beatson, Scott A.; Ben Zakour, Nouri L.; Totsika, Makrina; Forde, Brian M.; Watts, Rebecca E.; Mabbett, Amanda N.; Szubert, Jan M.; Sarkar, Sohinee; Phan, Minh-Duy; Peters, Kate M.; Petty, Nicola K.; Alikhan, Nabil-Fareed; Sullivan, Mitchell J.; Gawthorne, Jayde A.; Stanton-Cook, Mitchell; Nhu, Nguyen Thi Khanh; Chong, Teik Min; Yin, Wai-Fong; Chan, Kok-Gan; Hancock, Viktoria ; Ussery, David W.; Ulett, Glen C.; Schembri, Mark A.

    In: Infection and Immunity, Vol. 83, No. 5, 2015, p. 1749-1764.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  3. Published

    Novel variation and de novo mutation rates in population-wide de novo assembled Danish trios. / Besenbacher, Søren; Liu, Siyang; Gonzalez-Izarzugaza, Jose Maria; Grove, Jakob; Belling, Kirstine C.; Bork-Jensen, Jette; Huang, Shujia; Dam-Als, Thomas; Li, Shengting; Yadav, Rachita; Yadav, Rachita; Rubio García, Arcadio; Lescai, Francesco; Demontis, Ditte ; Rao, Junhua ; Ye, Weijian ; Mailund, Thomas; Friborg, Rune M. ; Pedersen, Christian N. S.; Xu, Ruiqi; Sun, Jihua; Liu, Hao ; Wang, Ou ; Cheng, Xiaofang ; Flores Santa Cruz, David; Rydza, Emil Karol; Rapacki, Kristoffer; Sørensen, John Damm; Chmura, Piotr Jaroslaw; Westergaard, David; Dworzynski, Piotr; Sørensen, Thorkild I. A.; Lund, Ole; Hansen, Torben; Xu, Xun; Li, Ning; Bolund, Lars; Pedersen, Oluf; Eiberg, Hans; Krogh, Anders; Børglum, Anders D.; Brunak, Søren; Kristiansen, Karsten; Schierup, Mikkel H; Jun, Wang; Gupta, Ramneek; Villesen, Palle ; Rasmussen, Simon.

    In: Nature Communications, Vol. 6, 5969, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  4. Published

    Pan-Genome Analysis of Human Gastric Pathogen H. pylori: Comparative Genomics and Pathogenomics Approaches to Identify Regions Associated with Pathogenicity and Prediction of Potential Core Therapeutic Targets. / Ali, Amjad; Naz, Anam; Soares, Siomar C.; Bakhtiar, Marriam; Tiwari, Sandeep; Hassan, Syed S.; Hanan, Fazal; Ramos, Rommel; Pereira, Ulisses; Barh, Debmalya; Pereira Figueiredo, Henrique Cesar; Ussery, David; Miyoshi, Anderson; Silva, Artur; Azevedo, Vasco.

    In: Journal of Biomedicine and Biotechnology, Vol. 2015, 139580, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  5. Published
  6. Published

    Reduced ex vivo stimulated IL-6 response in infants randomized to fish oil from 9 to 18 months, especially among PPARG2 and COX2 wild types. / Harslof, Laurine B. S.; Damsgaard, Camilla T.; Andersen, Anders D.; Aakjaer, Ditte L.; Michaelsen, Kim F.; Hellgren, Lars I.; Frøkiær, Hanne; Vogel, Ulla; Lauritzen, Lotte.

    In: Prostaglandins, Leukotrienes & Essential Fatty Acids, Vol. 94, 2015, p. 21-27.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  7. Published

    Renal impairment and late toxicity in germ-cell cancer survivors.. / Lauritsen, J.; Mortensen, M. S.; Kier, M. G. G.; Christensen, I. J.; Agerbaek, M.; Gupta, Ramneek; Daugaard, G.

    In: Annals of Oncology, Vol. 26, No. 1, 2015, p. 173-178.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  8. Published

    RNA sequencing atopic dermatitis transcriptome profiling provides insights into novel disease mechanisms with potential therapeutic implications. / Suárez-Fariñas, Mayte; Ungar, Benjamin; Correa da Rosa, Joel; Ewald, David Adrian; Rozenblit, Mariya; Gonzalez, Juana; Xu, Hui; Zheng, Xiuzhong; Peng, Xiangyu; Estrada, Yeriel D.; Dillon, Stacey ; Krueger, James G.; Guttman-Yassky, Emma.

    In: Journal of Allergy and Clinical Immunology, Vol. 135, No. 5, 2015, p. 1218-1227.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  9. Published
  10. Published

    Serological assessment of neutrophil elastase activity on elastin during lung ECM remodeling. / Kristensen, Jacob Hull; Karsdal, Morten A.; Sand, Jannie M. B.; Willumsen, Nicholas; Diefenbach, Claudia; Svensson, Birte; Hägglund, Per; Oersnes-Leeming, Diana J.

    In: BMC Pulmonary Medicine, Vol. 15, 2015.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

  11. Published

    SNPsnap: a Web-based tool for identification and annotation of matched SNPs. / Pers, Tune Hannes; Timshel, Pascal; Hirschhorn, Joel N.

    In: Bioinformatics, Vol. 31, No. 3, 2015, p. 418-420.

    Publication: Research - peer-reviewJournal article – Annual report year: 2015

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