Center for Biological Sequence Analysis

  1. 2016
  2. Published

    Staphylococcus aureus Transcriptome Architecture : From Laboratory to Infection-Mimicking Conditions. / Mäder, Ulrike; Nicolas, Pierre; Depke, Maren; Pané-Farré, Jan; Debarbouille, Michel; van der Kooi-Pol, Magdalena M; Guérin, Cyprien; Dérozier, Sandra; Hiron, Aurelia; Jarmer, Hanne Østergaard; Leduc, Aurélie; Michalik, Stephan; Reilman, Ewoud; Schaffer, Marc; Schmidt, Frank; Bessières, Philippe; Noirot, Philippe; Hecker, Michael; Msadek, Tarek; Völker, Uwe; van Dijl, Jan Maarten.

    In: P L o S Genetics, Vol. 12, No. 4, e1005962, 2016.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  3. Published

    Toxoplasma gondii peptide ligands open the gate of the HLA class I binding groove. / McMurtrey, Curtis; Trolle, Thomas; Sansom, Tiffany; Remesh, Soumya G.; Kaever, Thomas; Bardet, Wilfried; Jackson, Kenneth; McLeod, Rima; Sette, Alessandro; Nielsen, Morten; Zajonc, Dirk M.; Blader, Ira J.; Peters, Bjoern; Hildebrand, William.

    In: eLife, Vol. 5, e12556, 2016.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  4. Published

    LOX1 inhibition with small molecules. / Gousiadou, Chryssoula; Kouskoumvekaki, Irene.

    In: Journal of Molecular Graphics and Modelling, Vol. 63, 2016, p. 99-109.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  5. Published

    Maximum-Entropy Models of Sequenced Immune Repertoires Predict Antigen-Antibody Affinity. / Asti, Lorenzo; Uguzzoni, Guido; Marcatili, Paolo; Pagnani, Andrea.

    In: P L o S Computational Biology (Online), Vol. 12, No. 4, e1004870, 2016.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  6. Published

    MECP2 Is a Frequently Amplified Oncogene with a Novel Epigenetic Mechanism That Mimics the Role of Activated RAS in Malignancy. / Neupane, Manish; Clark, Allison P.; Landini, Serena; Birkbak, Nicolai Juul; Eklund, Aron Charles; Lim, Elgene; Culhane, Aedin C.; Barry, William T.; Schumacher, Steven E.; Beroukhim, Rameen; Szallasi, Zoltan Imre; Vidal, Marc; Hill, David E.; Silver, Daniel P.

    In: Cancer Discovery, Vol. 6, No. 1, 2016, p. 45-58.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  7. E-pub ahead of print

    Model studies of lipid flip-flop in membranes. / Parisio, Giulia; Ferrarini, Alberta; Sperotto, Maria Maddalena.

    In: International Journal of Advances in Engineering Sciences and Applied Mathematics, 2016.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  8. E-pub ahead of print

    Molecular markers for tracking the origin and worldwide distribution of invasive strains of Puccinia striiformis. / Walter, Stephanie; Ali, Sajid; Kemen, Eric; Nazari, Kumarse; Bahri, Bochra A.; Enjalbert, Jérôme; Hansen, Jens G.; Brown, James K.M.; Sicheritz-Pontén, Thomas; Jones, Jonathan; de Vallavieille-Pope, Claude; Hovmøller, Mogens S.; Justesen, Annemarie Fejer.

    In: Ecology and Evolution, 2016.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  9. E-pub ahead of print

    NetMHCpan-3.0; improved prediction of binding to MHC class I molecules integrating information from multiple receptor and peptide length datasets. / Nielsen, Morten; Andreatta, Massimo.

    In: Genome Medicine, Vol. 8, No. 1, 33, 2016.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  10. Published

    Obesity and Bariatric Surgery Drive Epigenetic Variation of Spermatozoa in Humans. / Donkin, Ida; Versteyhe, Soetkin; Ingerslev, Lars R.; Qian, Kui; Mechta, Mie; Nordkap, Loa; Mortensen, Brynjulf; Appel, Emil Vincent R; Jørgensen, Niels; Kristiansen, Viggo B.; Hansen, Torben; Workman, Christopher; Zierath, Juleen R.; Barrès, Romain.

    In: Cell Metabolism, Vol. 23, No. 2, 2016, p. 369–378.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  11. Published

    PD-1 Blockade Expands Intratumoral Memory T Cells. / Ribas, Antoni; Shin, Daniel Sanghoon; Zaretsky, Jesse; Frederiksen, Juliet Wairimu; Cornish, Andrew; Avramis, Earl; Seja, Elizabeth; Kivork, Christine; Siebert, Janet; Kaplan-Lefko, Paula; Wang, Xiaoyan; Chmielowski, Bartosz; Glaspy, John A.; Chodon, Thinle; Tumeh, Paul C.; Pe'er, Dana; Comin-Anduix, Begoña.

    In: Cancer Immunology Research , Vol. 4, No. 3, 2016, p. 194-203.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

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