Center for Biological Sequence Analysis

  1. 2017
  2. Published

    Analysis of 62 hybrid assembled human Y chromosomes exposes rapid structural changes and high rates of gene conversion. / Gonzalez-Izarzugaza, Jose Maria; Skov, Laurits; Maretty, Lasse; Jensen, Jacob Malte; Petersen, Bent; Andreas Sibbesen, Jonas; Liu, Siyang; Villesen, Palle ; Belling, Kirstine González-Izarzugaza; Theil Have, Christian; Gonzalez-Izarzugaza, Jose Maria; Grosjean, Marie; Bork-Jensen, Jette; Grove, Jakob; Als, Thomas D.; Huang, Shujia; Chang, Yuqi; Xu, Ruiqi; Ye, Weijian ; Rao, Junhua ; Guo, Xiaosen; Sun, Jihua; Cao, Hongzhi; Ye, Chen; van Beusekom, Johan; Espeseth, Thomas; Flindt, Esben; Friborg, Rune M. ; Halager, Anders E.; Le Hellard, Stephanie; Hultman, Christina M.; Lescai, Francesco; Li, Shengting; Lund, Ole; Løngren, Peter; Mailund, Thomas; Matey-Hernandez, María Luisa; Mors, Ole; Pedersen, Christian N. S.; Sicheritz-Pontén, Thomas; Sullivan, Patrick F.; Qaswar Ali Shah, Syed; Westergaard, David; Yadav, Rachita; Li, Ning; Xu, Xun; Hansen, Torben; Krogh, Anders; Bolund, Lars; Sørensen, Thorkild I. A.; Pedersen, Oluf; Gupta, Ramneek; Rasmussen, Simon; Besenbacher, Søren; Børglum, Anders D.; Wang, Jun; Eiberg, Hans; Kristiansen, Karsten; Brunak, Søren; Schierup, Mikkel Heide.

    In: P L o S Genetics, Vol. 13, No. 8, e1006834, 2017.

    Publication: Research - peer-reviewJournal article – Annual report year: 2017

  3. Published

    ArrayPitope: Automated Analysis of Amino Acid Substitutions for Peptide Microarray-Based Antibody Epitope Mapping. / Hansen, Christian Skjødt; Østerbye, Thomas; Marcatili, Paolo; Lund, Ole; Buus, Søren; Nielsen, Morten.

    In: P L o S One, Vol. 12, No. 1, e0168453, 2017.

    Publication: Research - peer-reviewJournal article – Annual report year: 2017

  4. Published

    A scored human protein-protein interaction network to catalyze genomic interpretation. / Li, Taibo; Wernersson, Rasmus; Hansen, Rasmus B; Horn, Heiko; Mercer, Johnathan; Slodkowicz, Grzegorz; Workman, Christopher T.; Rigina, Olga; Rapacki, Kristoffer; Stærfeldt, Hans Henrik; Brunak, Søren; Jensen, Thomas S.; Lage, Kasper.

    In: Nature Methods, Vol. 14, 2017, p. 61–64.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  5. Published

    Breadth of T cell responses after immunization with adenovirus vectors encoding ancestral antigens or polyvalent papillomavirus antigens. / Ragonnaud, Emeline; Pedersen, Anders Gorm; Holst, Peter Johannes.

    In: Scandinavian Journal of Immunology, Vol. 85, No. 3, 2017, p. 182-190.

    Publication: Research - peer-reviewJournal article – Annual report year: 2017

  6. Published

    Chromosome copy number variation in telomerized human bone marrow stromal cells; insights for monitoring safe ex-vivo expansion of adult stem cells. / Burns, Jorge S.; Harkness, Linda; Aldahmash, Abdullah; Gautier, Laurent; Kassem, Moustapha.

    In: Stem Cell Research, Vol. 25, 2017, p. 6-17.

    Publication: Research - peer-reviewJournal article – Annual report year: 2017

  7. Published

    Chromosome-wise Protein Interaction Patterns and Their Impact on Functional Implications of Large-Scale Genomic Aberrations. / Kirk, Isa Kristina; Weinhold, Nils; Belling, Kirstine González-Izarzugaza; Skakkebæk, Niels Erik; Jensen, Thomas Skøt; Leffers, Henrik; Juul, Anders ; Brunak, Søren.

    In: Cell Systems, Vol. 4, No. 3, 2017, p. 357-364.

    Publication: Research - peer-reviewJournal article – Annual report year: 2017

  8. Published

    Distinct roles for the IIId2 sub-domain in pestivirus and picornavirus internal ribosome entry sites. / Willcocks, Margaret M.; Zaini, Salmah; Chamond, Nathalie; Ulryck, Nathalie; Allouche, Delphine; Rajagopalan, Noemie; Davids, Nana A; Fahn E, Ulrik; Hadsbjerg, Johanne; Rasmussen, Thomas Bruun; Roberts, Lisa O.; Sargueil, Bruno; Belsham, Graham J; Locker, Nicolas.

    In: Nucleic Acids Research, Vol. 2017, gkx991, 2017.

    Publication: Research - peer-reviewJournal article – Annual report year: 2017

  9. Published

    Diversity, Prevalence, and Longitudinal Occurrence of Type II Toxin-Antitoxin Systems of Pseudomonas aeruginosa Infecting Cystic Fibrosis Lungs. / Breum Andersen, Sandra; Ghoul, Melanie; Griffin, Ashleigh S.; Petersen, Bent; Johansen, Helle Krogh; Molin, Søren.

    In: Frontiers in Microbiology, Vol. 8, 1180, 2017.

    Publication: Research - peer-reviewJournal article – Annual report year: 2017

  10. Published

    Dynamic Rearrangement of Cell States Detected by Systematic Screening of Sequential Anticancer Treatments. / Koplev, Simon; Longden, James; Ferkinghoff-Borg, Jesper; Blicher Bjerregård, Mathias; Cox, Thomas R.; Erler, Janine T.; Pedersen, Jesper T.; Voellmy, Franziska; Sommer, Morten Otto Alexander; Linding, Rune.

    In: Cell Reports, Vol. 20, No. 12, 2017, p. 2784-2791.

    Publication: Research - peer-reviewJournal article – Annual report year: 2017

  11. Published

    Evolutionary analysis of whole-genome sequences confirms inter-farm transmission of Aleutian mink disease virus. / Hagberg, Emma Elisabeth; Pedersen, Anders Gorm; Larsen, Lars E; Krarup, Anders.

    In: Journal of General Virology, Vol. 98, No. 6, 2017, p. 1360-1371.

    Publication: Research - peer-reviewJournal article – Annual report year: 2017

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