Center for Biological Sequence Analysis

  1. 2017
  2. Published

    ArrayPitope: Automated Analysis of Amino Acid Substitutions for Peptide Microarray-Based Antibody Epitope Mapping. / Hansen, Christian Skjødt; Østerbye, Thomas; Marcatili, Paolo; Lund, Ole; Buus, Søren; Nielsen, Morten.

    In: P L o S One, Vol. 12, No. 1, e0168453, 2017.

    Publication: Research - peer-reviewJournal article – Annual report year: 2017

  3. Published

    A scored human protein-protein interaction network to catalyze genomic interpretation. / Li, Taibo; Wernersson, Rasmus; Hansen, Rasmus B; Horn, Heiko; Mercer, Johnathan; Slodkowicz, Grzegorz; Workman, Christopher T.; Rigina, Olga; Rapacki, Kristoffer; Stærfeldt, Hans Henrik; Brunak, Søren; Jensen, Thomas S.; Lage, Kasper.

    In: Nature Methods, Vol. 14, 2017, p. 61–64.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  4. Accepted/In press

    Breadth of T cell responses after immunization with adenovirus vectors encoding ancestral antigens or polyvalent papillomavirus antigens. / Ragonnaud, Emeline; Pedersen, Anders Gorm; Holst, Peter Johannes.

    In: Scandinavian Journal of Immunology, 2017.

    Publication: Research - peer-reviewJournal article – Annual report year: 2017

  5. Published

    Chromosome-wise Protein Interaction Patterns and Their Impact on Functional Implications of Large-Scale Genomic Aberrations. / Kirk, Isa Kristina; Weinhold, Nils; Belling, Kirstine González-Izarzugaza; Skakkebæk, Niels Erik; Jensen, Thomas Skøt; Leffers, Henrik; Juul, Anders ; Brunak, Søren.

    In: Cell Systems, Vol. 4, No. 3, 2017, p. 357-364.

    Publication: Research - peer-reviewJournal article – Annual report year: 2017

  6. Published
  7. Published
  8. E-pub ahead of print

    Hierarchical Sets: Analyzing Pangenome Structure through Scalable Set Visualizations. / Pedersen, Thomas Lin.

    In: Bioinformatics, 2017.

    Publication: Research - peer-reviewJournal article – Annual report year: 2017

  9. Published

    Major differences between human atopic dermatitis and murine models as determined by global transcriptomic profiling. / Ewald, David Adrian; Noda, Shinji; Oliva, Margeaux; Litman, Thomas; Nakajima, Saeko; Li, Xuan; Xu, Hui; Scheipers, Peter; Svitacheva, Naila; Labuda, Tord; Krueger, James G.; Suárez-Fariñas, Mayte; Kabashima, Kenji; Guttman-Yassky, Emma.

    In: Journal of Allergy and Clinical Immunology, Vol. 139, No. 2, 2017, p. 562-571.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  10. Published

    Meta-Analysis of Genome-Wide Association Studies for Abdominal Aortic Aneurysm Identifies Four New Disease-Specific Risk Loci. / Jones, Gregory T; Tromp, Gerard; Kuivaniemi, Helena; Gretarsdottir, Solveig; Baas, Annette F; Giusti, Betti; Strauss, Ewa; van 't Hof, Femke N; Webb, Thomas; Erdman, Robert; Lindholt, Jes S.; Folkersen, Lasse.

    In: Circulation Research, Vol. 120, 116.308765, 2017, p. 341-353.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  11. Published

    MIToS.jl: mutual information tools for protein sequence analysis in the Julia language. / Zea, Diego J.; Anfossi, Diego; Nielsen, Morten; Marino-Buslje, Cristina.

    In: Bioinformatics, Vol. 33, No. 4, btw646, 2017.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

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