Center for Biological Sequence Analysis

  1. 2018
  2. Accepted/In press

    A comprehensive and quantitative comparison of text-mining in 15 million full-text articles versus their corresponding abstracts. / Westergaard, David; Stærfeldt, Hans Henrik; Tønsberg, Christian; Jensen, Lars Juhl; Brunak, Søren; Rzhetsky, Andrey.

    In: P L o S Computational Biology (Online), Vol. 14, No. 2, e1005962, 2018.

    Publication: Research - peer-reviewJournal article – Annual report year: 2018

  3. Published

    Exposure of tropoelastin to peroxynitrous acid gives high yields of nitrated tyrosine residues, di-tyrosine cross-links and altered protein structure and function. / Degendorfer, Georg; Chuang, Christine Yu-Nung; Mariotti, Michele; Hammer, Astrid; Hoefler, Gerald; Hägglund, Per; Malle, Ernst; Wise, Steven G.; Davies, Michael J.

    In: Free Radical Biology & Medicine, Vol. 115, 2018, p. 219-231.

    Publication: Research - peer-reviewJournal article – Annual report year: 2018

  4. Published
  5. Published

    miRandola 2017: a curated knowledge base of non-invasive biomarkers. / Russo, Francesco; Di Bella, Sebastiano; Vannini, Federica; Berti, Gabriele; Scoyni, Flavia; Cook, Helen Victoria; Santos, Alberto; Nigita, Giovanni; Bonnici, Vincenzo; Laganà, Alessandro; Geraci, Filippo; Pulvirenti, Alfredo; Giugno, Rosalba; De Masi, Federico; Belling, Kirstine González-Izarzugaza; Jensen, Lars Juhl; Brunak, Søren; Pellegrini, Marco; Ferro, Alfredo.

    In: Nucleic Acids Research, Vol. 46, No. D1, gkx854, 2018, p. D354-D359.

    Publication: Research - peer-reviewJournal article – Annual report year: 2018

  6. 2017
  7. Published

    Analysis of 62 hybrid assembled human Y chromosomes exposes rapid structural changes and high rates of gene conversion. / Gonzalez-Izarzugaza, Jose Maria; Skov, Laurits; Maretty, Lasse; Jensen, Jacob Malte; Petersen, Bent; Andreas Sibbesen, Jonas; Liu, Siyang; Villesen, Palle ; Belling, Kirstine González-Izarzugaza; Theil Have, Christian; Gonzalez-Izarzugaza, Jose Maria; Grosjean, Marie; Bork-Jensen, Jette; Grove, Jakob; Als, Thomas D.; Huang, Shujia; Chang, Yuqi; Xu, Ruiqi; Ye, Weijian ; Rao, Junhua ; Guo, Xiaosen; Sun, Jihua; Cao, Hongzhi; Ye, Chen; van Beusekom, Johan; Espeseth, Thomas; Flindt, Esben; Friborg, Rune M. ; Halager, Anders E.; Le Hellard, Stephanie; Hultman, Christina M.; Lescai, Francesco; Li, Shengting; Lund, Ole; Løngren, Peter; Mailund, Thomas; Matey-Hernandez, María Luisa; Mors, Ole; Pedersen, Christian N. S.; Sicheritz-Pontén, Thomas; Sullivan, Patrick F.; Qaswar Ali Shah, Syed; Westergaard, David; Yadav, Rachita; Li, Ning; Xu, Xun; Hansen, Torben; Krogh, Anders; Bolund, Lars; Sørensen, Thorkild I. A.; Pedersen, Oluf; Gupta, Ramneek; Rasmussen, Simon; Besenbacher, Søren; Børglum, Anders D.; Wang, Jun; Eiberg, Hans; Kristiansen, Karsten; Brunak, Søren; Schierup, Mikkel Heide.

    In: P L o S Genetics, Vol. 13, No. 8, e1006834, 2017.

    Publication: Research - peer-reviewJournal article – Annual report year: 2017

  8. Published

    ArrayPitope: Automated Analysis of Amino Acid Substitutions for Peptide Microarray-Based Antibody Epitope Mapping. / Hansen, Christian Skjødt; Østerbye, Thomas; Marcatili, Paolo; Lund, Ole; Buus, Søren; Nielsen, Morten.

    In: P L o S One, Vol. 12, No. 1, e0168453, 2017.

    Publication: Research - peer-reviewJournal article – Annual report year: 2017

  9. Published

    A scored human protein-protein interaction network to catalyze genomic interpretation. / Li, Taibo; Wernersson, Rasmus; Hansen, Rasmus B; Horn, Heiko; Mercer, Johnathan; Slodkowicz, Grzegorz; Workman, Christopher T.; Rigina, Olga; Rapacki, Kristoffer; Stærfeldt, Hans Henrik; Brunak, Søren; Jensen, Thomas S.; Lage, Kasper.

    In: Nature Methods, Vol. 14, 2017, p. 61–64.

    Publication: Research - peer-reviewJournal article – Annual report year: 2016

  10. Published

    Breadth of T cell responses after immunization with adenovirus vectors encoding ancestral antigens or polyvalent papillomavirus antigens. / Ragonnaud, Emeline; Pedersen, Anders Gorm; Holst, Peter Johannes.

    In: Scandinavian Journal of Immunology, Vol. 85, No. 3, 2017, p. 182-190.

    Publication: Research - peer-reviewJournal article – Annual report year: 2017

  11. Published

    Chromosome copy number variation in telomerized human bone marrow stromal cells; insights for monitoring safe ex-vivo expansion of adult stem cells. / Burns, Jorge S.; Harkness, Linda; Aldahmash, Abdullah; Gautier, Laurent; Kassem, Moustapha.

    In: Stem Cell Research, Vol. 25, 2017, p. 6-17.

    Publication: Research - peer-reviewJournal article – Annual report year: 2017

  12. Published

    Chromosome-wise Protein Interaction Patterns and Their Impact on Functional Implications of Large-Scale Genomic Aberrations. / Kirk, Isa Kristina; Weinhold, Nils; Belling, Kirstine González-Izarzugaza; Skakkebæk, Niels Erik; Jensen, Thomas Skøt; Leffers, Henrik; Juul, Anders ; Brunak, Søren.

    In: Cell Systems, Vol. 4, No. 3, 2017, p. 357-364.

    Publication: Research - peer-reviewJournal article – Annual report year: 2017

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